Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0783

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0782 and EX28DRAFT_0783 overlap by 8 nucleotidesEX28DRAFT_0783 and EX28DRAFT_0784 overlap by 22 nucleotidesEX28DRAFT_0784 and EX28DRAFT_0785 are separated by 22 nucleotides EX28DRAFT_0782: EX28DRAFT_0782 - Fatty acid desaturase, at 779,959 to 781,011 _0782 EX28DRAFT_0783: EX28DRAFT_0783 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 781,004 to 781,762 _0783 EX28DRAFT_0784: EX28DRAFT_0784 - Transcriptional regulator, at 781,741 to 782,637 _0784 EX28DRAFT_0785: EX28DRAFT_0785 - oxidoreductase alpha (molybdopterin) subunit, at 782,660 to 784,948 _0785 Position (kb) 781 782Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 780.012 kb on + strandat 780.013 kb on - strandat 780.013 kb on - strandat 780.147 kb on + strand, within EX28DRAFT_0782at 780.153 kb on + strand, within EX28DRAFT_0782at 780.153 kb on + strand, within EX28DRAFT_0782at 780.157 kb on + strand, within EX28DRAFT_0782at 780.157 kb on + strand, within EX28DRAFT_0782at 780.157 kb on + strand, within EX28DRAFT_0782at 780.157 kb on + strand, within EX28DRAFT_0782at 780.158 kb on - strand, within EX28DRAFT_0782at 780.158 kb on - strand, within EX28DRAFT_0782at 780.244 kb on + strand, within EX28DRAFT_0782at 780.245 kb on - strand, within EX28DRAFT_0782at 780.245 kb on - strand, within EX28DRAFT_0782at 780.245 kb on - strand, within EX28DRAFT_0782at 780.425 kb on - strand, within EX28DRAFT_0782at 780.425 kb on - strand, within EX28DRAFT_0782at 780.425 kb on - strand, within EX28DRAFT_0782at 780.765 kb on + strand, within EX28DRAFT_0782at 780.811 kb on + strand, within EX28DRAFT_0782at 780.811 kb on + strand, within EX28DRAFT_0782at 780.812 kb on - strand, within EX28DRAFT_0782at 780.812 kb on - strand, within EX28DRAFT_0782at 780.868 kb on + strand, within EX28DRAFT_0782at 780.932 kb on + strandat 781.031 kb on + strandat 781.032 kb on - strandat 781.032 kb on - strandat 781.032 kb on - strandat 781.032 kb on - strandat 781.242 kb on - strand, within EX28DRAFT_0783at 781.242 kb on - strand, within EX28DRAFT_0783at 781.348 kb on + strand, within EX28DRAFT_0783at 781.349 kb on - strand, within EX28DRAFT_0783at 781.763 kb on + strandat 781.763 kb on + strandat 781.764 kb on - strandat 781.764 kb on - strandat 781.764 kb on - strandat 781.764 kb on - strandat 782.013 kb on + strand, within EX28DRAFT_0784at 782.201 kb on + strand, within EX28DRAFT_0784at 782.276 kb on + strand, within EX28DRAFT_0784at 782.276 kb on + strand, within EX28DRAFT_0784at 782.360 kb on - strand, within EX28DRAFT_0784at 782.628 kb on + strandat 782.632 kb on - strandat 782.641 kb on + strandat 782.662 kb on - strandat 782.715 kb on + strandat 782.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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780,012 + -0.3
780,013 - -0.2
780,013 - +0.0
780,147 + EX28DRAFT_0782 0.18 -0.3
780,153 + EX28DRAFT_0782 0.18 -2.4
780,153 + EX28DRAFT_0782 0.18 +0.2
780,157 + EX28DRAFT_0782 0.19 +0.2
780,157 + EX28DRAFT_0782 0.19 +0.4
780,157 + EX28DRAFT_0782 0.19 +0.7
780,157 + EX28DRAFT_0782 0.19 +0.1
780,158 - EX28DRAFT_0782 0.19 -3.4
780,158 - EX28DRAFT_0782 0.19 -0.4
780,244 + EX28DRAFT_0782 0.27 -2.3
780,245 - EX28DRAFT_0782 0.27 +0.0
780,245 - EX28DRAFT_0782 0.27 -1.2
780,245 - EX28DRAFT_0782 0.27 -4.0
780,425 - EX28DRAFT_0782 0.44 +0.4
780,425 - EX28DRAFT_0782 0.44 -0.2
780,425 - EX28DRAFT_0782 0.44 +2.1
780,765 + EX28DRAFT_0782 0.77 +0.8
780,811 + EX28DRAFT_0782 0.81 +0.3
780,811 + EX28DRAFT_0782 0.81 +0.5
780,812 - EX28DRAFT_0782 0.81 +0.5
780,812 - EX28DRAFT_0782 0.81 -1.2
780,868 + EX28DRAFT_0782 0.86 +2.4
780,932 + +0.5
781,031 + +0.4
781,032 - +0.1
781,032 - +0.5
781,032 - +0.9
781,032 - -0.6
781,242 - EX28DRAFT_0783 0.31 -2.0
781,242 - EX28DRAFT_0783 0.31 -3.2
781,348 + EX28DRAFT_0783 0.45 +0.2
781,349 - EX28DRAFT_0783 0.45 -0.5
781,763 + +0.2
781,763 + +1.1
781,764 - -0.2
781,764 - +0.8
781,764 - -0.1
781,764 - -0.8
782,013 + EX28DRAFT_0784 0.30 +0.1
782,201 + EX28DRAFT_0784 0.51 -0.2
782,276 + EX28DRAFT_0784 0.60 +1.9
782,276 + EX28DRAFT_0784 0.60 +0.5
782,360 - EX28DRAFT_0784 0.69 +0.5
782,628 + +0.4
782,632 - -0.8
782,641 + -0.5
782,662 - +0.5
782,715 + +0.7
782,745 + -1.1

Or see this region's nucleotide sequence