Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0709

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0707 and EX28DRAFT_0708 are separated by 170 nucleotidesEX28DRAFT_0708 and EX28DRAFT_0709 are separated by 85 nucleotidesEX28DRAFT_0709 and EX28DRAFT_0710 overlap by 4 nucleotidesEX28DRAFT_0710 and EX28DRAFT_0711 are separated by 24 nucleotides EX28DRAFT_0707: EX28DRAFT_0707 - formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-), at 706,141 to 707,319 _0707 EX28DRAFT_0708: EX28DRAFT_0708 - Uncharacterized protein conserved in bacteria, at 707,490 to 708,137 _0708 EX28DRAFT_0709: EX28DRAFT_0709 - Protease II, at 708,223 to 710,283 _0709 EX28DRAFT_0710: EX28DRAFT_0710 - DNA polymerase III, epsilon subunit and related 3'-5' exonucleases, at 710,280 to 710,942 _0710 EX28DRAFT_0711: EX28DRAFT_0711 - Predicted amidohydrolase, at 710,967 to 711,617 _0711 Position (kb) 708 709 710 711Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 707.320 kb on - strandat 707.475 kb on + strandat 707.643 kb on + strand, within EX28DRAFT_0708at 707.649 kb on - strand, within EX28DRAFT_0708at 707.706 kb on + strand, within EX28DRAFT_0708at 707.831 kb on + strand, within EX28DRAFT_0708at 707.832 kb on - strand, within EX28DRAFT_0708at 707.920 kb on + strand, within EX28DRAFT_0708at 707.921 kb on - strand, within EX28DRAFT_0708at 707.989 kb on - strand, within EX28DRAFT_0708at 708.045 kb on - strand, within EX28DRAFT_0708at 708.192 kb on + strandat 708.193 kb on - strandat 708.193 kb on - strandat 708.194 kb on + strandat 708.194 kb on + strandat 708.194 kb on + strandat 708.194 kb on + strandat 708.194 kb on + strandat 708.194 kb on + strandat 708.195 kb on - strandat 708.195 kb on - strandat 708.202 kb on - strandat 708.243 kb on + strandat 708.289 kb on + strandat 708.289 kb on + strandat 708.289 kb on + strandat 708.289 kb on + strandat 708.290 kb on - strandat 708.290 kb on - strandat 708.505 kb on + strand, within EX28DRAFT_0709at 708.506 kb on - strand, within EX28DRAFT_0709at 708.601 kb on + strand, within EX28DRAFT_0709at 708.603 kb on + strand, within EX28DRAFT_0709at 708.662 kb on - strand, within EX28DRAFT_0709at 708.662 kb on - strand, within EX28DRAFT_0709at 708.781 kb on + strand, within EX28DRAFT_0709at 708.781 kb on + strand, within EX28DRAFT_0709at 708.782 kb on - strand, within EX28DRAFT_0709at 708.782 kb on - strand, within EX28DRAFT_0709at 708.835 kb on - strand, within EX28DRAFT_0709at 708.835 kb on - strand, within EX28DRAFT_0709at 708.871 kb on + strand, within EX28DRAFT_0709at 708.872 kb on - strand, within EX28DRAFT_0709at 708.895 kb on + strand, within EX28DRAFT_0709at 708.895 kb on + strand, within EX28DRAFT_0709at 708.896 kb on - strand, within EX28DRAFT_0709at 708.896 kb on - strand, within EX28DRAFT_0709at 708.929 kb on - strand, within EX28DRAFT_0709at 708.929 kb on - strand, within EX28DRAFT_0709at 708.929 kb on - strand, within EX28DRAFT_0709at 708.936 kb on + strand, within EX28DRAFT_0709at 708.936 kb on + strand, within EX28DRAFT_0709at 708.937 kb on - strand, within EX28DRAFT_0709at 708.937 kb on - strand, within EX28DRAFT_0709at 709.069 kb on + strand, within EX28DRAFT_0709at 709.108 kb on + strand, within EX28DRAFT_0709at 709.110 kb on + strand, within EX28DRAFT_0709at 709.440 kb on - strand, within EX28DRAFT_0709at 709.585 kb on + strand, within EX28DRAFT_0709at 709.585 kb on + strand, within EX28DRAFT_0709at 709.625 kb on + strand, within EX28DRAFT_0709at 709.984 kb on + strand, within EX28DRAFT_0709at 709.984 kb on + strand, within EX28DRAFT_0709at 709.984 kb on + strand, within EX28DRAFT_0709at 709.985 kb on - strand, within EX28DRAFT_0709at 709.994 kb on - strand, within EX28DRAFT_0709at 710.047 kb on - strand, within EX28DRAFT_0709at 710.086 kb on + strandat 710.207 kb on - strandat 710.237 kb on + strandat 710.238 kb on - strandat 710.297 kb on - strandat 710.297 kb on - strandat 710.347 kb on + strand, within EX28DRAFT_0710at 710.348 kb on - strand, within EX28DRAFT_0710at 710.348 kb on - strand, within EX28DRAFT_0710at 710.358 kb on + strand, within EX28DRAFT_0710at 710.359 kb on - strand, within EX28DRAFT_0710at 710.359 kb on - strand, within EX28DRAFT_0710at 710.363 kb on - strand, within EX28DRAFT_0710at 710.420 kb on + strand, within EX28DRAFT_0710at 710.486 kb on + strand, within EX28DRAFT_0710at 710.486 kb on + strand, within EX28DRAFT_0710at 710.486 kb on + strand, within EX28DRAFT_0710at 710.487 kb on - strand, within EX28DRAFT_0710at 710.520 kb on - strand, within EX28DRAFT_0710at 710.521 kb on + strand, within EX28DRAFT_0710at 710.521 kb on + strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.531 kb on - strand, within EX28DRAFT_0710at 710.591 kb on - strand, within EX28DRAFT_0710at 710.612 kb on + strand, within EX28DRAFT_0710at 710.713 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.729 kb on - strand, within EX28DRAFT_0710at 710.731 kb on + strand, within EX28DRAFT_0710at 710.732 kb on - strand, within EX28DRAFT_0710at 710.732 kb on - strand, within EX28DRAFT_0710at 710.895 kb on + strandat 710.974 kb on - strandat 711.121 kb on + strand, within EX28DRAFT_0711at 711.121 kb on + strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.125 kb on + strand, within EX28DRAFT_0711at 711.126 kb on - strand, within EX28DRAFT_0711at 711.252 kb on - strand, within EX28DRAFT_0711at 711.252 kb on - strand, within EX28DRAFT_0711

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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707,320 - -0.4
707,475 + +1.7
707,643 + EX28DRAFT_0708 0.24 +0.1
707,649 - EX28DRAFT_0708 0.25 +0.0
707,706 + EX28DRAFT_0708 0.33 +1.6
707,831 + EX28DRAFT_0708 0.53 +0.6
707,832 - EX28DRAFT_0708 0.53 +0.3
707,920 + EX28DRAFT_0708 0.66 -0.4
707,921 - EX28DRAFT_0708 0.67 +0.6
707,989 - EX28DRAFT_0708 0.77 +3.1
708,045 - EX28DRAFT_0708 0.86 +0.2
708,192 + -2.7
708,193 - +0.2
708,193 - -1.2
708,194 + +1.4
708,194 + +0.9
708,194 + +0.2
708,194 + +0.2
708,194 + -1.9
708,194 + +1.4
708,195 - -0.2
708,195 - +0.3
708,202 - +0.0
708,243 + -0.1
708,289 + -0.3
708,289 + -0.7
708,289 + -0.4
708,289 + -0.4
708,290 - +0.2
708,290 - -0.5
708,505 + EX28DRAFT_0709 0.14 -0.1
708,506 - EX28DRAFT_0709 0.14 -0.2
708,601 + EX28DRAFT_0709 0.18 -0.4
708,603 + EX28DRAFT_0709 0.18 -0.8
708,662 - EX28DRAFT_0709 0.21 -0.4
708,662 - EX28DRAFT_0709 0.21 +1.5
708,781 + EX28DRAFT_0709 0.27 +0.1
708,781 + EX28DRAFT_0709 0.27 +0.1
708,782 - EX28DRAFT_0709 0.27 -0.4
708,782 - EX28DRAFT_0709 0.27 -0.1
708,835 - EX28DRAFT_0709 0.30 -0.2
708,835 - EX28DRAFT_0709 0.30 -2.2
708,871 + EX28DRAFT_0709 0.31 +0.1
708,872 - EX28DRAFT_0709 0.31 -2.9
708,895 + EX28DRAFT_0709 0.33 +0.4
708,895 + EX28DRAFT_0709 0.33 +0.2
708,896 - EX28DRAFT_0709 0.33 -1.2
708,896 - EX28DRAFT_0709 0.33 +0.8
708,929 - EX28DRAFT_0709 0.34 -3.0
708,929 - EX28DRAFT_0709 0.34 +0.1
708,929 - EX28DRAFT_0709 0.34 -0.3
708,936 + EX28DRAFT_0709 0.35 -0.5
708,936 + EX28DRAFT_0709 0.35 -0.8
708,937 - EX28DRAFT_0709 0.35 +2.2
708,937 - EX28DRAFT_0709 0.35 +0.1
709,069 + EX28DRAFT_0709 0.41 -2.2
709,108 + EX28DRAFT_0709 0.43 -0.3
709,110 + EX28DRAFT_0709 0.43 -0.8
709,440 - EX28DRAFT_0709 0.59 -0.7
709,585 + EX28DRAFT_0709 0.66 -0.8
709,585 + EX28DRAFT_0709 0.66 +0.3
709,625 + EX28DRAFT_0709 0.68 +0.2
709,984 + EX28DRAFT_0709 0.85 +0.2
709,984 + EX28DRAFT_0709 0.85 -0.9
709,984 + EX28DRAFT_0709 0.85 -0.2
709,985 - EX28DRAFT_0709 0.85 -0.1
709,994 - EX28DRAFT_0709 0.86 -2.7
710,047 - EX28DRAFT_0709 0.89 -2.5
710,086 + -0.1
710,207 - -3.0
710,237 + -1.0
710,238 - +0.1
710,297 - -2.1
710,297 - -1.2
710,347 + EX28DRAFT_0710 0.10 -0.2
710,348 - EX28DRAFT_0710 0.10 -0.7
710,348 - EX28DRAFT_0710 0.10 -0.2
710,358 + EX28DRAFT_0710 0.12 +0.6
710,359 - EX28DRAFT_0710 0.12 +0.4
710,359 - EX28DRAFT_0710 0.12 -0.3
710,363 - EX28DRAFT_0710 0.13 +0.7
710,420 + EX28DRAFT_0710 0.21 -0.7
710,486 + EX28DRAFT_0710 0.31 -0.5
710,486 + EX28DRAFT_0710 0.31 +0.1
710,486 + EX28DRAFT_0710 0.31 -4.1
710,487 - EX28DRAFT_0710 0.31 -1.8
710,520 - EX28DRAFT_0710 0.36 -1.6
710,521 + EX28DRAFT_0710 0.36 +0.4
710,521 + EX28DRAFT_0710 0.36 -1.2
710,522 - EX28DRAFT_0710 0.37 +0.6
710,522 - EX28DRAFT_0710 0.37 -0.8
710,522 - EX28DRAFT_0710 0.37 +0.4
710,522 - EX28DRAFT_0710 0.37 -0.6
710,531 - EX28DRAFT_0710 0.38 +0.5
710,591 - EX28DRAFT_0710 0.47 +0.5
710,612 + EX28DRAFT_0710 0.50 +0.0
710,713 + EX28DRAFT_0710 0.65 -0.3
710,728 + EX28DRAFT_0710 0.68 +0.4
710,728 + EX28DRAFT_0710 0.68 +2.0
710,728 + EX28DRAFT_0710 0.68 -0.5
710,729 - EX28DRAFT_0710 0.68 +0.0
710,731 + EX28DRAFT_0710 0.68 +0.1
710,732 - EX28DRAFT_0710 0.68 -0.2
710,732 - EX28DRAFT_0710 0.68 -1.2
710,895 + -0.0
710,974 - +0.5
711,121 + EX28DRAFT_0711 0.24 -0.3
711,121 + EX28DRAFT_0711 0.24 +0.7
711,122 - EX28DRAFT_0711 0.24 -0.2
711,122 - EX28DRAFT_0711 0.24 -1.0
711,122 - EX28DRAFT_0711 0.24 +0.2
711,125 + EX28DRAFT_0711 0.24 -0.7
711,126 - EX28DRAFT_0711 0.24 -3.3
711,252 - EX28DRAFT_0711 0.44 -0.7
711,252 - EX28DRAFT_0711 0.44 +0.3

Or see this region's nucleotide sequence