Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0663

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0662 and EX28DRAFT_0663 are separated by 19 nucleotidesEX28DRAFT_0663 and EX28DRAFT_0664 are separated by 104 nucleotides EX28DRAFT_0662: EX28DRAFT_0662 - Chemotaxis protein histidine kinase and related kinases, at 656,025 to 658,061 _0662 EX28DRAFT_0663: EX28DRAFT_0663 - Chemotaxis signal transduction protein, at 658,081 to 658,584 _0663 EX28DRAFT_0664: EX28DRAFT_0664 - Na+/H+-dicarboxylate symporters, at 658,689 to 659,954 _0664 Position (kb) 658 659Strain fitness (log2 ratio) -3 -2 -1 0 1at 657.087 kb on + strand, within EX28DRAFT_0662at 657.087 kb on + strand, within EX28DRAFT_0662at 657.140 kb on + strand, within EX28DRAFT_0662at 657.536 kb on + strand, within EX28DRAFT_0662at 657.537 kb on - strand, within EX28DRAFT_0662at 657.537 kb on - strand, within EX28DRAFT_0662at 657.575 kb on + strand, within EX28DRAFT_0662at 657.576 kb on - strand, within EX28DRAFT_0662at 657.913 kb on + strandat 657.914 kb on - strandat 657.914 kb on - strandat 658.048 kb on - strandat 658.048 kb on - strandat 658.063 kb on + strandat 658.064 kb on - strandat 658.075 kb on - strandat 658.077 kb on + strandat 658.243 kb on - strand, within EX28DRAFT_0663at 658.324 kb on + strand, within EX28DRAFT_0663at 658.325 kb on - strand, within EX28DRAFT_0663at 658.577 kb on + strandat 658.578 kb on - strandat 658.587 kb on - strandat 658.691 kb on - strandat 658.705 kb on - strandat 658.769 kb on + strandat 658.769 kb on + strandat 658.769 kb on + strandat 658.788 kb on - strandat 658.859 kb on + strand, within EX28DRAFT_0664at 658.984 kb on + strand, within EX28DRAFT_0664at 658.984 kb on + strand, within EX28DRAFT_0664at 659.021 kb on - strand, within EX28DRAFT_0664at 659.021 kb on - strand, within EX28DRAFT_0664at 659.219 kb on - strand, within EX28DRAFT_0664at 659.219 kb on - strand, within EX28DRAFT_0664at 659.263 kb on + strand, within EX28DRAFT_0664at 659.264 kb on - strand, within EX28DRAFT_0664at 659.264 kb on - strand, within EX28DRAFT_0664at 659.264 kb on - strand, within EX28DRAFT_0664at 659.264 kb on - strand, within EX28DRAFT_0664at 659.264 kb on - strand, within EX28DRAFT_0664at 659.287 kb on + strand, within EX28DRAFT_0664at 659.288 kb on - strand, within EX28DRAFT_0664at 659.362 kb on + strand, within EX28DRAFT_0664at 659.362 kb on + strand, within EX28DRAFT_0664at 659.363 kb on - strand, within EX28DRAFT_0664at 659.363 kb on - strand, within EX28DRAFT_0664at 659.363 kb on - strand, within EX28DRAFT_0664at 659.372 kb on - strand, within EX28DRAFT_0664at 659.394 kb on - strand, within EX28DRAFT_0664

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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657,087 + EX28DRAFT_0662 0.52 -0.8
657,087 + EX28DRAFT_0662 0.52 +0.3
657,140 + EX28DRAFT_0662 0.55 +0.3
657,536 + EX28DRAFT_0662 0.74 -3.3
657,537 - EX28DRAFT_0662 0.74 +0.3
657,537 - EX28DRAFT_0662 0.74 -1.7
657,575 + EX28DRAFT_0662 0.76 -1.1
657,576 - EX28DRAFT_0662 0.76 +1.1
657,913 + -0.4
657,914 - +0.5
657,914 - -0.2
658,048 - +0.2
658,048 - -0.7
658,063 + +1.0
658,064 - +0.3
658,075 - -0.0
658,077 + -0.3
658,243 - EX28DRAFT_0663 0.32 -1.1
658,324 + EX28DRAFT_0663 0.48 -0.4
658,325 - EX28DRAFT_0663 0.48 -1.7
658,577 + +0.2
658,578 - +0.1
658,587 - -0.4
658,691 - +0.6
658,705 - -0.8
658,769 + -1.0
658,769 + -0.7
658,769 + -0.2
658,788 - +0.9
658,859 + EX28DRAFT_0664 0.13 +0.9
658,984 + EX28DRAFT_0664 0.23 -0.9
658,984 + EX28DRAFT_0664 0.23 -0.3
659,021 - EX28DRAFT_0664 0.26 +0.9
659,021 - EX28DRAFT_0664 0.26 -0.5
659,219 - EX28DRAFT_0664 0.42 +0.2
659,219 - EX28DRAFT_0664 0.42 -0.2
659,263 + EX28DRAFT_0664 0.45 +0.5
659,264 - EX28DRAFT_0664 0.45 -3.4
659,264 - EX28DRAFT_0664 0.45 +0.3
659,264 - EX28DRAFT_0664 0.45 +0.0
659,264 - EX28DRAFT_0664 0.45 -0.1
659,264 - EX28DRAFT_0664 0.45 -0.5
659,287 + EX28DRAFT_0664 0.47 +0.0
659,288 - EX28DRAFT_0664 0.47 +0.9
659,362 + EX28DRAFT_0664 0.53 +0.7
659,362 + EX28DRAFT_0664 0.53 +0.1
659,363 - EX28DRAFT_0664 0.53 -2.6
659,363 - EX28DRAFT_0664 0.53 -1.7
659,363 - EX28DRAFT_0664 0.53 +1.2
659,372 - EX28DRAFT_0664 0.54 +0.4
659,394 - EX28DRAFT_0664 0.56 +1.7

Or see this region's nucleotide sequence