Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0482

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0481 and EX28DRAFT_0482 are separated by 0 nucleotidesEX28DRAFT_0482 and EX28DRAFT_0483 are separated by 0 nucleotides EX28DRAFT_0481: EX28DRAFT_0481 - Arabinose efflux permease, at 463,924 to 465,339 _0481 EX28DRAFT_0482: EX28DRAFT_0482 - Cation/multidrug efflux pump, at 465,340 to 468,417 _0482 EX28DRAFT_0483: EX28DRAFT_0483 - Cation/multidrug efflux pump, at 468,418 to 471,540 _0483 Position (kb) 465 466 467 468 469Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 464.552 kb on + strand, within EX28DRAFT_0481at 464.618 kb on + strand, within EX28DRAFT_0481at 464.709 kb on + strand, within EX28DRAFT_0481at 464.776 kb on - strand, within EX28DRAFT_0481at 464.777 kb on + strand, within EX28DRAFT_0481at 464.778 kb on - strand, within EX28DRAFT_0481at 464.862 kb on - strand, within EX28DRAFT_0481at 464.943 kb on + strand, within EX28DRAFT_0481at 464.944 kb on - strand, within EX28DRAFT_0481at 464.945 kb on + strand, within EX28DRAFT_0481at 464.946 kb on - strand, within EX28DRAFT_0481at 464.946 kb on - strand, within EX28DRAFT_0481at 464.946 kb on - strand, within EX28DRAFT_0481at 465.111 kb on + strand, within EX28DRAFT_0481at 465.180 kb on - strand, within EX28DRAFT_0481at 465.180 kb on - strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.196 kb on - strand, within EX28DRAFT_0481at 465.201 kb on + strandat 465.202 kb on - strandat 465.202 kb on - strandat 465.304 kb on + strandat 465.305 kb on - strandat 465.342 kb on - strandat 465.404 kb on + strandat 465.404 kb on + strandat 465.405 kb on - strandat 465.422 kb on + strandat 465.422 kb on + strandat 465.422 kb on + strandat 465.682 kb on + strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.797 kb on + strand, within EX28DRAFT_0482at 465.807 kb on - strand, within EX28DRAFT_0482at 465.825 kb on + strand, within EX28DRAFT_0482at 465.825 kb on + strand, within EX28DRAFT_0482at 465.825 kb on + strand, within EX28DRAFT_0482at 465.826 kb on - strand, within EX28DRAFT_0482at 465.826 kb on - strand, within EX28DRAFT_0482at 465.826 kb on - strand, within EX28DRAFT_0482at 465.828 kb on - strand, within EX28DRAFT_0482at 465.828 kb on - strand, within EX28DRAFT_0482at 465.828 kb on - strand, within EX28DRAFT_0482at 465.999 kb on + strand, within EX28DRAFT_0482at 466.079 kb on + strand, within EX28DRAFT_0482at 466.181 kb on + strand, within EX28DRAFT_0482at 466.199 kb on + strand, within EX28DRAFT_0482at 466.200 kb on - strand, within EX28DRAFT_0482at 466.295 kb on + strand, within EX28DRAFT_0482at 466.296 kb on - strand, within EX28DRAFT_0482at 466.430 kb on + strand, within EX28DRAFT_0482at 466.431 kb on - strand, within EX28DRAFT_0482at 466.436 kb on + strand, within EX28DRAFT_0482at 466.587 kb on + strand, within EX28DRAFT_0482at 466.588 kb on - strand, within EX28DRAFT_0482at 466.672 kb on - strand, within EX28DRAFT_0482at 466.672 kb on - strand, within EX28DRAFT_0482at 466.787 kb on + strand, within EX28DRAFT_0482at 466.787 kb on + strand, within EX28DRAFT_0482at 466.787 kb on + strand, within EX28DRAFT_0482at 466.787 kb on + strand, within EX28DRAFT_0482at 466.788 kb on - strand, within EX28DRAFT_0482at 466.788 kb on - strand, within EX28DRAFT_0482at 466.788 kb on - strand, within EX28DRAFT_0482at 466.788 kb on - strand, within EX28DRAFT_0482at 467.119 kb on - strand, within EX28DRAFT_0482at 467.285 kb on + strand, within EX28DRAFT_0482at 467.286 kb on - strand, within EX28DRAFT_0482at 467.286 kb on - strand, within EX28DRAFT_0482at 467.286 kb on - strand, within EX28DRAFT_0482at 467.286 kb on - strand, within EX28DRAFT_0482at 467.538 kb on + strand, within EX28DRAFT_0482at 467.587 kb on - strand, within EX28DRAFT_0482at 467.676 kb on - strand, within EX28DRAFT_0482at 467.683 kb on - strand, within EX28DRAFT_0482at 467.941 kb on - strand, within EX28DRAFT_0482at 467.972 kb on + strand, within EX28DRAFT_0482at 467.973 kb on - strand, within EX28DRAFT_0482at 467.973 kb on - strand, within EX28DRAFT_0482at 467.976 kb on + strand, within EX28DRAFT_0482at 468.354 kb on + strandat 468.392 kb on + strandat 468.419 kb on + strandat 468.419 kb on + strandat 468.419 kb on + strandat 468.420 kb on - strandat 468.485 kb on + strandat 468.485 kb on + strandat 468.486 kb on - strandat 468.486 kb on - strandat 468.486 kb on - strandat 468.908 kb on + strand, within EX28DRAFT_0483at 468.908 kb on + strand, within EX28DRAFT_0483at 468.908 kb on + strand, within EX28DRAFT_0483at 468.908 kb on + strand, within EX28DRAFT_0483at 468.908 kb on + strand, within EX28DRAFT_0483at 468.909 kb on - strand, within EX28DRAFT_0483at 468.909 kb on - strand, within EX28DRAFT_0483at 468.909 kb on - strand, within EX28DRAFT_0483at 469.065 kb on - strand, within EX28DRAFT_0483at 469.136 kb on + strand, within EX28DRAFT_0483at 469.281 kb on - strand, within EX28DRAFT_0483at 469.281 kb on - strand, within EX28DRAFT_0483at 469.316 kb on + strand, within EX28DRAFT_0483at 469.385 kb on + strand, within EX28DRAFT_0483

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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464,552 + EX28DRAFT_0481 0.44 -0.1
464,618 + EX28DRAFT_0481 0.49 +1.1
464,709 + EX28DRAFT_0481 0.55 +0.4
464,776 - EX28DRAFT_0481 0.60 -0.0
464,777 + EX28DRAFT_0481 0.60 -0.7
464,778 - EX28DRAFT_0481 0.60 +0.6
464,862 - EX28DRAFT_0481 0.66 +0.8
464,943 + EX28DRAFT_0481 0.72 +1.4
464,944 - EX28DRAFT_0481 0.72 -0.2
464,945 + EX28DRAFT_0481 0.72 -1.5
464,946 - EX28DRAFT_0481 0.72 +0.3
464,946 - EX28DRAFT_0481 0.72 -0.9
464,946 - EX28DRAFT_0481 0.72 +1.0
465,111 + EX28DRAFT_0481 0.84 -0.5
465,180 - EX28DRAFT_0481 0.89 +0.6
465,180 - EX28DRAFT_0481 0.89 +0.4
465,195 + EX28DRAFT_0481 0.90 -0.3
465,195 + EX28DRAFT_0481 0.90 -0.3
465,195 + EX28DRAFT_0481 0.90 -2.7
465,195 + EX28DRAFT_0481 0.90 -0.2
465,195 + EX28DRAFT_0481 0.90 +1.3
465,196 - EX28DRAFT_0481 0.90 +1.1
465,201 + -2.2
465,202 - -2.1
465,202 - +0.6
465,304 + -2.3
465,305 - -1.0
465,342 - -0.8
465,404 + +0.4
465,404 + -3.0
465,405 - +0.6
465,422 + -0.4
465,422 + -0.2
465,422 + -0.8
465,682 + EX28DRAFT_0482 0.11 -2.0
465,683 - EX28DRAFT_0482 0.11 -0.4
465,683 - EX28DRAFT_0482 0.11 -1.0
465,683 - EX28DRAFT_0482 0.11 +1.9
465,683 - EX28DRAFT_0482 0.11 +0.4
465,688 - EX28DRAFT_0482 0.11 +0.2
465,688 - EX28DRAFT_0482 0.11 -0.2
465,688 - EX28DRAFT_0482 0.11 -0.8
465,688 - EX28DRAFT_0482 0.11 -0.1
465,797 + EX28DRAFT_0482 0.15 +1.0
465,807 - EX28DRAFT_0482 0.15 -0.2
465,825 + EX28DRAFT_0482 0.16 +0.6
465,825 + EX28DRAFT_0482 0.16 -4.5
465,825 + EX28DRAFT_0482 0.16 +0.4
465,826 - EX28DRAFT_0482 0.16 -2.8
465,826 - EX28DRAFT_0482 0.16 +0.1
465,826 - EX28DRAFT_0482 0.16 +0.6
465,828 - EX28DRAFT_0482 0.16 -2.0
465,828 - EX28DRAFT_0482 0.16 -0.2
465,828 - EX28DRAFT_0482 0.16 +0.7
465,999 + EX28DRAFT_0482 0.21 +0.4
466,079 + EX28DRAFT_0482 0.24 -0.5
466,181 + EX28DRAFT_0482 0.27 +0.2
466,199 + EX28DRAFT_0482 0.28 +0.9
466,200 - EX28DRAFT_0482 0.28 -1.0
466,295 + EX28DRAFT_0482 0.31 +1.2
466,296 - EX28DRAFT_0482 0.31 -0.3
466,430 + EX28DRAFT_0482 0.35 +0.0
466,431 - EX28DRAFT_0482 0.35 -0.3
466,436 + EX28DRAFT_0482 0.36 -1.0
466,587 + EX28DRAFT_0482 0.41 -0.3
466,588 - EX28DRAFT_0482 0.41 +0.6
466,672 - EX28DRAFT_0482 0.43 +0.4
466,672 - EX28DRAFT_0482 0.43 +0.1
466,787 + EX28DRAFT_0482 0.47 +0.2
466,787 + EX28DRAFT_0482 0.47 +1.1
466,787 + EX28DRAFT_0482 0.47 -0.1
466,787 + EX28DRAFT_0482 0.47 +0.7
466,788 - EX28DRAFT_0482 0.47 -0.4
466,788 - EX28DRAFT_0482 0.47 +0.3
466,788 - EX28DRAFT_0482 0.47 +0.4
466,788 - EX28DRAFT_0482 0.47 -1.0
467,119 - EX28DRAFT_0482 0.58 -1.0
467,285 + EX28DRAFT_0482 0.63 -0.4
467,286 - EX28DRAFT_0482 0.63 -1.6
467,286 - EX28DRAFT_0482 0.63 +1.3
467,286 - EX28DRAFT_0482 0.63 -0.5
467,286 - EX28DRAFT_0482 0.63 -0.5
467,538 + EX28DRAFT_0482 0.71 -2.3
467,587 - EX28DRAFT_0482 0.73 +0.4
467,676 - EX28DRAFT_0482 0.76 +1.1
467,683 - EX28DRAFT_0482 0.76 +0.8
467,941 - EX28DRAFT_0482 0.85 +1.1
467,972 + EX28DRAFT_0482 0.86 +0.1
467,973 - EX28DRAFT_0482 0.86 -2.0
467,973 - EX28DRAFT_0482 0.86 +1.2
467,976 + EX28DRAFT_0482 0.86 -1.4
468,354 + -0.2
468,392 + +0.0
468,419 + -0.2
468,419 + -0.3
468,419 + +1.6
468,420 - -0.4
468,485 + +0.2
468,485 + -0.4
468,486 - -0.4
468,486 - -0.4
468,486 - +1.3
468,908 + EX28DRAFT_0483 0.16 +1.2
468,908 + EX28DRAFT_0483 0.16 +0.3
468,908 + EX28DRAFT_0483 0.16 +0.7
468,908 + EX28DRAFT_0483 0.16 -1.6
468,908 + EX28DRAFT_0483 0.16 +1.2
468,909 - EX28DRAFT_0483 0.16 +0.2
468,909 - EX28DRAFT_0483 0.16 -1.0
468,909 - EX28DRAFT_0483 0.16 -0.7
469,065 - EX28DRAFT_0483 0.21 +0.8
469,136 + EX28DRAFT_0483 0.23 -0.7
469,281 - EX28DRAFT_0483 0.28 +1.2
469,281 - EX28DRAFT_0483 0.28 -1.6
469,316 + EX28DRAFT_0483 0.29 -0.6
469,385 + EX28DRAFT_0483 0.31 -0.8

Or see this region's nucleotide sequence