Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0247

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0246 and EX28DRAFT_0247 are separated by 5 nucleotidesEX28DRAFT_0247 and EX28DRAFT_0248 are separated by 157 nucleotides EX28DRAFT_0246: EX28DRAFT_0246 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 200,651 to 202,357 _0246 EX28DRAFT_0247: EX28DRAFT_0247 - type VI secretion system effector, Hcp1 family, at 202,363 to 202,854 _0247 EX28DRAFT_0248: EX28DRAFT_0248 - type VI secretion ATPase, ClpV1 family, at 203,012 to 205,666 _0248 Position (kb) 202 203Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 201.704 kb on - strand, within EX28DRAFT_0246at 201.705 kb on + strand, within EX28DRAFT_0246at 201.705 kb on + strand, within EX28DRAFT_0246at 201.705 kb on + strand, within EX28DRAFT_0246at 201.806 kb on - strand, within EX28DRAFT_0246at 201.856 kb on - strand, within EX28DRAFT_0246at 201.859 kb on + strand, within EX28DRAFT_0246at 201.859 kb on + strand, within EX28DRAFT_0246at 201.860 kb on - strand, within EX28DRAFT_0246at 201.955 kb on + strand, within EX28DRAFT_0246at 201.955 kb on + strand, within EX28DRAFT_0246at 201.955 kb on + strand, within EX28DRAFT_0246at 201.955 kb on + strand, within EX28DRAFT_0246at 201.956 kb on - strand, within EX28DRAFT_0246at 202.098 kb on + strand, within EX28DRAFT_0246at 202.339 kb on - strandat 202.359 kb on + strandat 202.414 kb on - strand, within EX28DRAFT_0247at 202.474 kb on - strand, within EX28DRAFT_0247at 202.474 kb on - strand, within EX28DRAFT_0247at 202.481 kb on - strand, within EX28DRAFT_0247at 202.481 kb on - strand, within EX28DRAFT_0247at 202.579 kb on + strand, within EX28DRAFT_0247at 202.580 kb on - strand, within EX28DRAFT_0247at 202.631 kb on - strand, within EX28DRAFT_0247at 202.663 kb on + strand, within EX28DRAFT_0247at 202.718 kb on - strand, within EX28DRAFT_0247at 202.718 kb on - strand, within EX28DRAFT_0247at 202.718 kb on - strand, within EX28DRAFT_0247at 203.035 kb on - strandat 203.134 kb on - strandat 203.783 kb on - strand, within EX28DRAFT_0248

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
201,704 - EX28DRAFT_0246 0.62 +0.4
201,705 + EX28DRAFT_0246 0.62 +0.4
201,705 + EX28DRAFT_0246 0.62 +0.1
201,705 + EX28DRAFT_0246 0.62 +0.3
201,806 - EX28DRAFT_0246 0.68 -0.8
201,856 - EX28DRAFT_0246 0.71 -0.2
201,859 + EX28DRAFT_0246 0.71 +0.8
201,859 + EX28DRAFT_0246 0.71 -0.0
201,860 - EX28DRAFT_0246 0.71 -0.6
201,955 + EX28DRAFT_0246 0.76 -0.4
201,955 + EX28DRAFT_0246 0.76 +2.5
201,955 + EX28DRAFT_0246 0.76 -2.8
201,955 + EX28DRAFT_0246 0.76 -1.0
201,956 - EX28DRAFT_0246 0.76 +1.2
202,098 + EX28DRAFT_0246 0.85 +0.8
202,339 - -0.6
202,359 + +0.7
202,414 - EX28DRAFT_0247 0.10 -0.9
202,474 - EX28DRAFT_0247 0.23 -2.6
202,474 - EX28DRAFT_0247 0.23 -0.1
202,481 - EX28DRAFT_0247 0.24 +0.2
202,481 - EX28DRAFT_0247 0.24 -3.8
202,579 + EX28DRAFT_0247 0.44 -1.4
202,580 - EX28DRAFT_0247 0.44 -3.8
202,631 - EX28DRAFT_0247 0.54 +0.0
202,663 + EX28DRAFT_0247 0.61 -1.6
202,718 - EX28DRAFT_0247 0.72 -0.6
202,718 - EX28DRAFT_0247 0.72 -0.1
202,718 - EX28DRAFT_0247 0.72 -0.6
203,035 - +0.2
203,134 - -0.4
203,783 - EX28DRAFT_0248 0.29 +0.5

Or see this region's nucleotide sequence