Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0246 and EX28DRAFT_0247 are separated by 5 nucleotides EX28DRAFT_0247 and EX28DRAFT_0248 are separated by 157 nucleotides
EX28DRAFT_0246: EX28DRAFT_0246 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 200,651 to 202,357
_0246
EX28DRAFT_0247: EX28DRAFT_0247 - type VI secretion system effector, Hcp1 family, at 202,363 to 202,854
_0247
EX28DRAFT_0248: EX28DRAFT_0248 - type VI secretion ATPase, ClpV1 family, at 203,012 to 205,666
_0248
Position (kb) 202
203 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 201.704 kb on - strand, within EX28DRAFT_0246 at 201.705 kb on + strand, within EX28DRAFT_0246 at 201.705 kb on + strand, within EX28DRAFT_0246 at 201.705 kb on + strand, within EX28DRAFT_0246 at 201.806 kb on - strand, within EX28DRAFT_0246 at 201.856 kb on - strand, within EX28DRAFT_0246 at 201.859 kb on + strand, within EX28DRAFT_0246 at 201.859 kb on + strand, within EX28DRAFT_0246 at 201.860 kb on - strand, within EX28DRAFT_0246 at 201.955 kb on + strand, within EX28DRAFT_0246 at 201.955 kb on + strand, within EX28DRAFT_0246 at 201.955 kb on + strand, within EX28DRAFT_0246 at 201.955 kb on + strand, within EX28DRAFT_0246 at 201.956 kb on - strand, within EX28DRAFT_0246 at 202.098 kb on + strand, within EX28DRAFT_0246 at 202.339 kb on - strand at 202.359 kb on + strand at 202.414 kb on - strand, within EX28DRAFT_0247 at 202.474 kb on - strand, within EX28DRAFT_0247 at 202.474 kb on - strand, within EX28DRAFT_0247 at 202.481 kb on - strand, within EX28DRAFT_0247 at 202.481 kb on - strand, within EX28DRAFT_0247 at 202.579 kb on + strand, within EX28DRAFT_0247 at 202.580 kb on - strand, within EX28DRAFT_0247 at 202.631 kb on - strand, within EX28DRAFT_0247 at 202.663 kb on + strand, within EX28DRAFT_0247 at 202.718 kb on - strand, within EX28DRAFT_0247 at 202.718 kb on - strand, within EX28DRAFT_0247 at 202.718 kb on - strand, within EX28DRAFT_0247 at 203.035 kb on - strand at 203.134 kb on - strand at 203.783 kb on - strand, within EX28DRAFT_0248
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 201,704 - EX28DRAFT_0246 0.62 +0.4 201,705 + EX28DRAFT_0246 0.62 +0.4 201,705 + EX28DRAFT_0246 0.62 +0.1 201,705 + EX28DRAFT_0246 0.62 +0.3 201,806 - EX28DRAFT_0246 0.68 -0.8 201,856 - EX28DRAFT_0246 0.71 -0.2 201,859 + EX28DRAFT_0246 0.71 +0.8 201,859 + EX28DRAFT_0246 0.71 -0.0 201,860 - EX28DRAFT_0246 0.71 -0.6 201,955 + EX28DRAFT_0246 0.76 -0.4 201,955 + EX28DRAFT_0246 0.76 +2.5 201,955 + EX28DRAFT_0246 0.76 -2.8 201,955 + EX28DRAFT_0246 0.76 -1.0 201,956 - EX28DRAFT_0246 0.76 +1.2 202,098 + EX28DRAFT_0246 0.85 +0.8 202,339 - -0.6 202,359 + +0.7 202,414 - EX28DRAFT_0247 0.10 -0.9 202,474 - EX28DRAFT_0247 0.23 -2.6 202,474 - EX28DRAFT_0247 0.23 -0.1 202,481 - EX28DRAFT_0247 0.24 +0.2 202,481 - EX28DRAFT_0247 0.24 -3.8 202,579 + EX28DRAFT_0247 0.44 -1.4 202,580 - EX28DRAFT_0247 0.44 -3.8 202,631 - EX28DRAFT_0247 0.54 +0.0 202,663 + EX28DRAFT_0247 0.61 -1.6 202,718 - EX28DRAFT_0247 0.72 -0.6 202,718 - EX28DRAFT_0247 0.72 -0.1 202,718 - EX28DRAFT_0247 0.72 -0.6 203,035 - +0.2 203,134 - -0.4 203,783 - EX28DRAFT_0248 0.29 +0.5
Or see this region's nucleotide sequence