Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0062

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0060 and EX28DRAFT_0061 overlap by 4 nucleotidesEX28DRAFT_0061 and EX28DRAFT_0062 are separated by 45 nucleotidesEX28DRAFT_0062 and EX28DRAFT_0063 are separated by 110 nucleotides EX28DRAFT_0060: EX28DRAFT_0060 - metabolite-proton symporter, at 521 to 1,816 _0060 EX28DRAFT_0061: EX28DRAFT_0061 - Predicted periplasmic lipoprotein, at 1,813 to 2,136 _0061 EX28DRAFT_0062: EX28DRAFT_0062 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 2,182 to 3,537 _0062 EX28DRAFT_0063: EX28DRAFT_0063 - Acyl-CoA synthetase (NDP forming), at 3,648 to 6,311 _0063 Position (kb) 2 3 4Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1.256 kb on - strand, within EX28DRAFT_0060at 1.310 kb on + strand, within EX28DRAFT_0060at 1.310 kb on + strand, within EX28DRAFT_0060at 1.311 kb on - strand, within EX28DRAFT_0060at 1.311 kb on - strand, within EX28DRAFT_0060at 1.311 kb on - strand, within EX28DRAFT_0060at 1.311 kb on - strand, within EX28DRAFT_0060at 1.311 kb on - strand, within EX28DRAFT_0060at 1.312 kb on + strand, within EX28DRAFT_0060at 1.393 kb on + strand, within EX28DRAFT_0060at 1.401 kb on + strand, within EX28DRAFT_0060at 1.401 kb on + strand, within EX28DRAFT_0060at 1.408 kb on + strand, within EX28DRAFT_0060at 1.408 kb on + strand, within EX28DRAFT_0060at 1.408 kb on + strand, within EX28DRAFT_0060at 1.409 kb on - strand, within EX28DRAFT_0060at 1.409 kb on - strand, within EX28DRAFT_0060at 1.409 kb on - strand, within EX28DRAFT_0060at 1.409 kb on - strand, within EX28DRAFT_0060at 1.445 kb on - strand, within EX28DRAFT_0060at 1.480 kb on - strand, within EX28DRAFT_0060at 1.483 kb on + strand, within EX28DRAFT_0060at 1.483 kb on + strand, within EX28DRAFT_0060at 1.483 kb on + strand, within EX28DRAFT_0060at 1.492 kb on + strand, within EX28DRAFT_0060at 1.493 kb on - strand, within EX28DRAFT_0060at 1.493 kb on - strand, within EX28DRAFT_0060at 1.574 kb on + strand, within EX28DRAFT_0060at 1.574 kb on + strand, within EX28DRAFT_0060at 1.575 kb on - strand, within EX28DRAFT_0060at 1.582 kb on + strand, within EX28DRAFT_0060at 1.583 kb on - strand, within EX28DRAFT_0060at 1.583 kb on - strand, within EX28DRAFT_0060at 1.583 kb on - strand, within EX28DRAFT_0060at 1.623 kb on + strand, within EX28DRAFT_0060at 1.623 kb on + strand, within EX28DRAFT_0060at 1.624 kb on - strand, within EX28DRAFT_0060at 1.650 kb on - strand, within EX28DRAFT_0060at 1.660 kb on + strand, within EX28DRAFT_0060at 1.661 kb on - strand, within EX28DRAFT_0060at 1.661 kb on - strand, within EX28DRAFT_0060at 1.661 kb on - strand, within EX28DRAFT_0060at 1.972 kb on - strand, within EX28DRAFT_0061at 1.985 kb on + strand, within EX28DRAFT_0061at 2.074 kb on - strand, within EX28DRAFT_0061at 2.119 kb on + strandat 2.130 kb on + strandat 2.131 kb on - strandat 3.578 kb on - strandat 3.644 kb on + strandat 3.649 kb on + strandat 3.696 kb on - strandat 3.765 kb on - strandat 3.770 kb on + strandat 3.771 kb on - strandat 3.771 kb on - strandat 3.771 kb on - strandat 3.774 kb on - strandat 3.810 kb on - strandat 3.811 kb on + strandat 3.812 kb on - strandat 4.058 kb on - strand, within EX28DRAFT_0063

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,256 - EX28DRAFT_0060 0.57 +0.2
1,310 + EX28DRAFT_0060 0.61 +0.0
1,310 + EX28DRAFT_0060 0.61 +0.3
1,311 - EX28DRAFT_0060 0.61 +0.0
1,311 - EX28DRAFT_0060 0.61 +0.6
1,311 - EX28DRAFT_0060 0.61 -3.8
1,311 - EX28DRAFT_0060 0.61 -0.1
1,311 - EX28DRAFT_0060 0.61 +0.3
1,312 + EX28DRAFT_0060 0.61 +0.6
1,393 + EX28DRAFT_0060 0.67 +0.9
1,401 + EX28DRAFT_0060 0.68 -0.9
1,401 + EX28DRAFT_0060 0.68 -0.2
1,408 + EX28DRAFT_0060 0.68 -0.1
1,408 + EX28DRAFT_0060 0.68 -1.0
1,408 + EX28DRAFT_0060 0.68 +0.1
1,409 - EX28DRAFT_0060 0.69 -0.1
1,409 - EX28DRAFT_0060 0.69 -0.1
1,409 - EX28DRAFT_0060 0.69 -0.6
1,409 - EX28DRAFT_0060 0.69 +0.7
1,445 - EX28DRAFT_0060 0.71 +0.5
1,480 - EX28DRAFT_0060 0.74 +0.8
1,483 + EX28DRAFT_0060 0.74 +1.3
1,483 + EX28DRAFT_0060 0.74 +0.5
1,483 + EX28DRAFT_0060 0.74 -0.5
1,492 + EX28DRAFT_0060 0.75 +1.6
1,493 - EX28DRAFT_0060 0.75 +0.6
1,493 - EX28DRAFT_0060 0.75 -2.4
1,574 + EX28DRAFT_0060 0.81 -3.3
1,574 + EX28DRAFT_0060 0.81 +0.4
1,575 - EX28DRAFT_0060 0.81 -1.0
1,582 + EX28DRAFT_0060 0.82 +1.1
1,583 - EX28DRAFT_0060 0.82 +0.9
1,583 - EX28DRAFT_0060 0.82 +0.1
1,583 - EX28DRAFT_0060 0.82 +0.4
1,623 + EX28DRAFT_0060 0.85 +0.9
1,623 + EX28DRAFT_0060 0.85 +0.4
1,624 - EX28DRAFT_0060 0.85 -0.2
1,650 - EX28DRAFT_0060 0.87 +0.3
1,660 + EX28DRAFT_0060 0.88 -0.1
1,661 - EX28DRAFT_0060 0.88 +0.5
1,661 - EX28DRAFT_0060 0.88 +0.3
1,661 - EX28DRAFT_0060 0.88 -0.4
1,972 - EX28DRAFT_0061 0.49 +0.8
1,985 + EX28DRAFT_0061 0.53 +0.4
2,074 - EX28DRAFT_0061 0.81 -0.8
2,119 + -0.8
2,130 + -1.1
2,131 - -1.3
3,578 - +1.6
3,644 + +0.2
3,649 + +0.2
3,696 - -1.0
3,765 - -0.3
3,770 + +0.7
3,771 - +0.5
3,771 - -0.1
3,771 - -0.5
3,774 - -0.4
3,810 - -0.0
3,811 + -0.2
3,812 - -0.6
4,058 - EX28DRAFT_0063 0.15 -1.0

Or see this region's nucleotide sequence