Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23750

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS09075 and AMB_RS23750 are separated by 360 nucleotidesAMB_RS23750 and AMB_RS09080 overlap by 4 nucleotides AMB_RS09075: AMB_RS09075 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,932,289 to 1,933,329 _RS09075 AMB_RS23750: AMB_RS23750 - modified peptide precursor CbpA, at 1,933,690 to 1,933,806 _RS23750 AMB_RS09080: AMB_RS09080 - peptide-modifying radical SAM enzyme CbpB, at 1,933,803 to 1,935,182 _RS09080 Position (kb) 1933 1934Strain fitness (log2 ratio) -2 -1 0 1at 1933.419 kb on + strandat 1933.419 kb on + strandat 1933.424 kb on + strandat 1933.424 kb on + strandat 1933.425 kb on - strandat 1933.425 kb on - strandat 1933.425 kb on - strandat 1933.425 kb on - strandat 1933.425 kb on - strandat 1933.485 kb on + strandat 1933.672 kb on + strandat 1933.673 kb on - strandat 1933.774 kb on + strand, within AMB_RS23750at 1933.774 kb on + strand, within AMB_RS23750at 1933.774 kb on + strand, within AMB_RS23750at 1933.774 kb on + strand, within AMB_RS23750at 1933.775 kb on - strand, within AMB_RS23750at 1933.775 kb on - strand, within AMB_RS23750at 1933.775 kb on - strand, within AMB_RS23750at 1933.775 kb on - strand, within AMB_RS23750at 1933.789 kb on - strand, within AMB_RS23750at 1933.789 kb on - strand, within AMB_RS23750at 1933.879 kb on - strandat 1934.046 kb on + strand, within AMB_RS09080at 1934.047 kb on - strand, within AMB_RS09080at 1934.085 kb on + strand, within AMB_RS09080at 1934.085 kb on + strand, within AMB_RS09080at 1934.086 kb on - strand, within AMB_RS09080at 1934.091 kb on + strand, within AMB_RS09080at 1934.091 kb on + strand, within AMB_RS09080at 1934.092 kb on - strand, within AMB_RS09080at 1934.092 kb on - strand, within AMB_RS09080at 1934.092 kb on - strand, within AMB_RS09080at 1934.126 kb on + strand, within AMB_RS09080at 1934.126 kb on + strand, within AMB_RS09080at 1934.126 kb on + strand, within AMB_RS09080at 1934.126 kb on + strand, within AMB_RS09080at 1934.126 kb on + strand, within AMB_RS09080at 1934.126 kb on + strand, within AMB_RS09080at 1934.126 kb on + strand, within AMB_RS09080at 1934.126 kb on + strand, within AMB_RS09080at 1934.126 kb on + strand, within AMB_RS09080at 1934.127 kb on - strand, within AMB_RS09080at 1934.127 kb on - strand, within AMB_RS09080at 1934.173 kb on - strand, within AMB_RS09080at 1934.274 kb on + strand, within AMB_RS09080at 1934.274 kb on + strand, within AMB_RS09080at 1934.478 kb on + strand, within AMB_RS09080at 1934.479 kb on - strand, within AMB_RS09080at 1934.479 kb on - strand, within AMB_RS09080at 1934.652 kb on + strand, within AMB_RS09080at 1934.652 kb on + strand, within AMB_RS09080at 1934.652 kb on + strand, within AMB_RS09080at 1934.653 kb on - strand, within AMB_RS09080at 1934.653 kb on - strand, within AMB_RS09080at 1934.653 kb on - strand, within AMB_RS09080

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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1,933,419 + +0.1
1,933,419 + -0.7
1,933,424 + -1.3
1,933,424 + -1.3
1,933,425 - -0.7
1,933,425 - +0.0
1,933,425 - -0.2
1,933,425 - +0.1
1,933,425 - -0.5
1,933,485 + -0.4
1,933,672 + +0.1
1,933,673 - -1.0
1,933,774 + AMB_RS23750 0.72 -0.2
1,933,774 + AMB_RS23750 0.72 +0.6
1,933,774 + AMB_RS23750 0.72 +0.4
1,933,774 + AMB_RS23750 0.72 +0.7
1,933,775 - AMB_RS23750 0.73 -0.2
1,933,775 - AMB_RS23750 0.73 -0.5
1,933,775 - AMB_RS23750 0.73 +0.3
1,933,775 - AMB_RS23750 0.73 -1.2
1,933,789 - AMB_RS23750 0.85 +0.5
1,933,789 - AMB_RS23750 0.85 +0.2
1,933,879 - +0.1
1,934,046 + AMB_RS09080 0.18 -0.2
1,934,047 - AMB_RS09080 0.18 -0.7
1,934,085 + AMB_RS09080 0.20 +0.4
1,934,085 + AMB_RS09080 0.20 -0.4
1,934,086 - AMB_RS09080 0.21 +0.5
1,934,091 + AMB_RS09080 0.21 -0.4
1,934,091 + AMB_RS09080 0.21 -0.5
1,934,092 - AMB_RS09080 0.21 +0.1
1,934,092 - AMB_RS09080 0.21 +0.7
1,934,092 - AMB_RS09080 0.21 -2.0
1,934,126 + AMB_RS09080 0.23 -0.5
1,934,126 + AMB_RS09080 0.23 +0.2
1,934,126 + AMB_RS09080 0.23 +0.3
1,934,126 + AMB_RS09080 0.23 -0.1
1,934,126 + AMB_RS09080 0.23 +0.1
1,934,126 + AMB_RS09080 0.23 -1.7
1,934,126 + AMB_RS09080 0.23 -0.8
1,934,126 + AMB_RS09080 0.23 +0.1
1,934,126 + AMB_RS09080 0.23 +0.0
1,934,127 - AMB_RS09080 0.23 -1.4
1,934,127 - AMB_RS09080 0.23 -1.1
1,934,173 - AMB_RS09080 0.27 -0.7
1,934,274 + AMB_RS09080 0.34 -2.4
1,934,274 + AMB_RS09080 0.34 +0.9
1,934,478 + AMB_RS09080 0.49 -1.2
1,934,479 - AMB_RS09080 0.49 -0.0
1,934,479 - AMB_RS09080 0.49 -0.1
1,934,652 + AMB_RS09080 0.62 -0.4
1,934,652 + AMB_RS09080 0.62 -0.4
1,934,652 + AMB_RS09080 0.62 +0.0
1,934,653 - AMB_RS09080 0.62 -0.5
1,934,653 - AMB_RS09080 0.62 -1.3
1,934,653 - AMB_RS09080 0.62 -1.7

Or see this region's nucleotide sequence