Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23195

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23715 and AMB_RS23195 overlap by 4 nucleotidesAMB_RS23195 and AMB_RS05435 overlap by 4 nucleotidesAMB_RS05435 and AMB_RS05440 are separated by 129 nucleotides AMB_RS23715: AMB_RS23715 - nodulation protein noeE, at 1,123,029 to 1,124,330 _RS23715 AMB_RS23195: AMB_RS23195 - ABC transporter ATP-binding protein, at 1,124,327 to 1,125,610 _RS23195 AMB_RS05435: AMB_RS05435 - ABC transporter permease, at 1,125,607 to 1,126,395 _RS05435 AMB_RS05440: AMB_RS05440 - hypothetical protein, at 1,126,525 to 1,127,946 _RS05440 Position (kb) 1124 1125 1126Strain fitness (log2 ratio) -2 -1 0 1at 1123.435 kb on - strand, within AMB_RS23715at 1123.608 kb on - strand, within AMB_RS23715at 1124.014 kb on + strand, within AMB_RS23715at 1124.071 kb on + strand, within AMB_RS23715at 1124.337 kb on - strandat 1124.337 kb on - strandat 1124.472 kb on + strand, within AMB_RS23195at 1124.473 kb on - strand, within AMB_RS23195at 1124.655 kb on + strand, within AMB_RS23195at 1124.691 kb on - strand, within AMB_RS23195at 1124.863 kb on + strand, within AMB_RS23195at 1124.866 kb on - strand, within AMB_RS23195at 1124.997 kb on + strand, within AMB_RS23195at 1124.998 kb on - strand, within AMB_RS23195at 1125.001 kb on + strand, within AMB_RS23195at 1125.001 kb on + strand, within AMB_RS23195at 1125.002 kb on - strand, within AMB_RS23195at 1125.139 kb on - strand, within AMB_RS23195at 1125.528 kb on + strandat 1125.611 kb on - strandat 1125.820 kb on + strand, within AMB_RS05435at 1125.821 kb on - strand, within AMB_RS05435at 1125.923 kb on + strand, within AMB_RS05435at 1125.923 kb on + strand, within AMB_RS05435at 1125.923 kb on + strand, within AMB_RS05435at 1125.924 kb on - strand, within AMB_RS05435at 1125.924 kb on - strand, within AMB_RS05435at 1126.076 kb on + strand, within AMB_RS05435at 1126.395 kb on + strandat 1126.396 kb on - strandat 1126.445 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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1,123,435 - AMB_RS23715 0.31 +0.4
1,123,608 - AMB_RS23715 0.44 -2.2
1,124,014 + AMB_RS23715 0.76 -0.2
1,124,071 + AMB_RS23715 0.80 +0.4
1,124,337 - -0.9
1,124,337 - -0.2
1,124,472 + AMB_RS23195 0.11 -0.9
1,124,473 - AMB_RS23195 0.11 -2.4
1,124,655 + AMB_RS23195 0.26 -1.5
1,124,691 - AMB_RS23195 0.28 -0.6
1,124,863 + AMB_RS23195 0.42 -1.1
1,124,866 - AMB_RS23195 0.42 -2.0
1,124,997 + AMB_RS23195 0.52 +0.2
1,124,998 - AMB_RS23195 0.52 -1.7
1,125,001 + AMB_RS23195 0.52 -0.4
1,125,001 + AMB_RS23195 0.52 -1.2
1,125,002 - AMB_RS23195 0.53 +0.4
1,125,139 - AMB_RS23195 0.63 -1.6
1,125,528 + +0.6
1,125,611 - -1.3
1,125,820 + AMB_RS05435 0.27 -1.2
1,125,821 - AMB_RS05435 0.27 -0.3
1,125,923 + AMB_RS05435 0.40 -1.9
1,125,923 + AMB_RS05435 0.40 -0.9
1,125,923 + AMB_RS05435 0.40 -1.6
1,125,924 - AMB_RS05435 0.40 +0.4
1,125,924 - AMB_RS05435 0.40 +1.2
1,126,076 + AMB_RS05435 0.59 +0.7
1,126,395 + -0.6
1,126,396 - -0.4
1,126,445 - +0.1
1,126,474 - +0.6
1,126,474 - +0.3
1,126,474 - -0.5
1,126,474 - -0.9
1,126,474 - +0.1
1,126,573 - +0.4

Or see this region's nucleotide sequence