Experiment: without_iron2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22745 and AMB_RS22750 are separated by 307 nucleotides AMB_RS22750 and AMB_RS22755 are separated by 26 nucleotides AMB_RS22755 and AMB_RS22760 are separated by 146 nucleotides AMB_RS22760 and AMB_RS22765 overlap by 4 nucleotides
AMB_RS22745: AMB_RS22745 - 4-hydroxy-tetrahydrodipicolinate reductase, at 4,910,148 to 4,910,945
_RS22745
AMB_RS22750: AMB_RS22750 - nucleotide exchange factor GrpE, at 4,911,253 to 4,911,864
_RS22750
AMB_RS22755: AMB_RS22755 - heat-inducible transcriptional repressor HrcA, at 4,911,891 to 4,912,955
_RS22755
AMB_RS22760: AMB_RS22760 - ribonuclease PH, at 4,913,102 to 4,913,821
_RS22760
AMB_RS22765: AMB_RS22765 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 4,913,818 to 4,914,423
_RS22765
Position (kb)
4911
4912
4913 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4910.995 kb on - strand at 4910.995 kb on - strand at 4911.016 kb on - strand at 4911.016 kb on - strand at 4911.112 kb on - strand at 4911.132 kb on + strand at 4911.133 kb on - strand at 4911.133 kb on - strand at 4911.133 kb on - strand at 4911.181 kb on - strand at 4911.192 kb on + strand at 4911.935 kb on - strand at 4911.961 kb on + strand at 4911.962 kb on - strand at 4912.877 kb on - strand at 4912.877 kb on - strand at 4912.877 kb on - strand at 4912.877 kb on - strand at 4912.877 kb on - strand at 4913.052 kb on + strand at 4913.060 kb on + strand at 4913.060 kb on + strand at 4913.060 kb on + strand at 4913.061 kb on - strand at 4913.061 kb on - strand at 4913.085 kb on + strand at 4913.600 kb on + strand, within AMB_RS22760 at 4913.600 kb on + strand, within AMB_RS22760
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron2 remove 4,910,995 - +0.9 4,910,995 - +0.1 4,911,016 - -0.1 4,911,016 - -1.1 4,911,112 - -2.1 4,911,132 + +0.7 4,911,133 - -0.2 4,911,133 - +0.4 4,911,133 - -0.4 4,911,181 - +0.3 4,911,192 + -0.3 4,911,935 - +0.1 4,911,961 + -0.5 4,911,962 - -1.2 4,912,877 - -0.7 4,912,877 - -0.8 4,912,877 - +0.8 4,912,877 - -3.4 4,912,877 - +0.1 4,913,052 + -0.5 4,913,060 + +0.0 4,913,060 + -1.8 4,913,060 + -0.7 4,913,061 - +0.1 4,913,061 - +0.1 4,913,085 + -0.0 4,913,600 + AMB_RS22760 0.69 -0.8 4,913,600 + AMB_RS22760 0.69 +0.3
Or see this region's nucleotide sequence