Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22210

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22200 and AMB_RS22205 are separated by 44 nucleotidesAMB_RS22205 and AMB_RS22210 are separated by 73 nucleotidesAMB_RS22210 and AMB_RS22215 are separated by 105 nucleotidesAMB_RS22215 and AMB_RS22220 are separated by 20 nucleotides AMB_RS22200: AMB_RS22200 - ABC transporter substrate-binding protein, at 4,791,205 to 4,792,983 _RS22200 AMB_RS22205: AMB_RS22205 - hypothetical protein, at 4,793,028 to 4,793,675 _RS22205 AMB_RS22210: AMB_RS22210 - adenosylhomocysteinase, at 4,793,749 to 4,795,140 _RS22210 AMB_RS22215: AMB_RS22215 - cupin domain-containing protein, at 4,795,246 to 4,795,656 _RS22215 AMB_RS22220: AMB_RS22220 - phosphoenolpyruvate--protein phosphotransferase, at 4,795,677 to 4,797,467 _RS22220 Position (kb) 4793 4794 4795 4796Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4793.029 kb on + strandat 4793.029 kb on + strandat 4793.029 kb on + strandat 4793.030 kb on - strandat 4793.030 kb on - strandat 4793.108 kb on + strand, within AMB_RS22205at 4793.108 kb on + strand, within AMB_RS22205at 4793.109 kb on - strand, within AMB_RS22205at 4793.109 kb on - strand, within AMB_RS22205at 4793.109 kb on - strand, within AMB_RS22205at 4793.110 kb on + strand, within AMB_RS22205at 4793.110 kb on + strand, within AMB_RS22205at 4793.111 kb on - strand, within AMB_RS22205at 4793.111 kb on - strand, within AMB_RS22205at 4793.111 kb on - strand, within AMB_RS22205at 4793.272 kb on + strand, within AMB_RS22205at 4793.272 kb on + strand, within AMB_RS22205at 4793.273 kb on - strand, within AMB_RS22205at 4793.273 kb on - strand, within AMB_RS22205at 4793.734 kb on + strandat 4793.735 kb on - strandat 4793.739 kb on + strandat 4793.739 kb on + strandat 4793.739 kb on + strandat 4793.739 kb on + strandat 4793.739 kb on + strandat 4793.740 kb on - strandat 4793.750 kb on + strandat 4793.750 kb on + strandat 4793.750 kb on + strandat 4793.751 kb on - strandat 4795.225 kb on + strandat 4795.247 kb on + strandat 4795.379 kb on + strand, within AMB_RS22215at 4795.379 kb on + strand, within AMB_RS22215at 4795.379 kb on + strand, within AMB_RS22215at 4795.379 kb on + strand, within AMB_RS22215at 4795.380 kb on - strand, within AMB_RS22215at 4795.380 kb on - strand, within AMB_RS22215at 4795.380 kb on - strand, within AMB_RS22215at 4795.380 kb on - strand, within AMB_RS22215at 4795.380 kb on - strand, within AMB_RS22215at 4795.431 kb on + strand, within AMB_RS22215at 4795.432 kb on - strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.434 kb on - strand, within AMB_RS22215at 4795.434 kb on - strand, within AMB_RS22215at 4795.434 kb on - strand, within AMB_RS22215at 4795.434 kb on - strand, within AMB_RS22215at 4795.434 kb on - strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.973 kb on - strand, within AMB_RS22220at 4795.973 kb on - strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.018 kb on - strand, within AMB_RS22220at 4796.018 kb on - strand, within AMB_RS22220at 4796.018 kb on - strand, within AMB_RS22220at 4796.018 kb on - strand, within AMB_RS22220

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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4,793,029 + +0.4
4,793,029 + -0.9
4,793,029 + -2.1
4,793,030 - -0.5
4,793,030 - +0.5
4,793,108 + AMB_RS22205 0.12 +2.5
4,793,108 + AMB_RS22205 0.12 -2.3
4,793,109 - AMB_RS22205 0.12 -1.2
4,793,109 - AMB_RS22205 0.12 -0.0
4,793,109 - AMB_RS22205 0.12 +0.2
4,793,110 + AMB_RS22205 0.13 +2.1
4,793,110 + AMB_RS22205 0.13 +0.4
4,793,111 - AMB_RS22205 0.13 +0.2
4,793,111 - AMB_RS22205 0.13 +0.0
4,793,111 - AMB_RS22205 0.13 +2.1
4,793,272 + AMB_RS22205 0.38 +0.0
4,793,272 + AMB_RS22205 0.38 -1.9
4,793,273 - AMB_RS22205 0.38 -0.5
4,793,273 - AMB_RS22205 0.38 +0.0
4,793,734 + -0.6
4,793,735 - +1.1
4,793,739 + -0.1
4,793,739 + +0.5
4,793,739 + +0.1
4,793,739 + +0.7
4,793,739 + -0.3
4,793,740 - +0.1
4,793,750 + +0.7
4,793,750 + -0.2
4,793,750 + -1.0
4,793,751 - -0.0
4,795,225 + -0.3
4,795,247 + -0.9
4,795,379 + AMB_RS22215 0.32 +0.5
4,795,379 + AMB_RS22215 0.32 +0.0
4,795,379 + AMB_RS22215 0.32 -0.5
4,795,379 + AMB_RS22215 0.32 +0.4
4,795,380 - AMB_RS22215 0.33 -1.0
4,795,380 - AMB_RS22215 0.33 +0.8
4,795,380 - AMB_RS22215 0.33 -0.8
4,795,380 - AMB_RS22215 0.33 +2.4
4,795,380 - AMB_RS22215 0.33 -0.6
4,795,431 + AMB_RS22215 0.45 -0.7
4,795,432 - AMB_RS22215 0.45 -0.6
4,795,433 + AMB_RS22215 0.45 -0.1
4,795,433 + AMB_RS22215 0.45 -0.0
4,795,433 + AMB_RS22215 0.45 +0.5
4,795,433 + AMB_RS22215 0.45 -0.3
4,795,433 + AMB_RS22215 0.45 -0.3
4,795,433 + AMB_RS22215 0.45 -0.7
4,795,434 - AMB_RS22215 0.46 -1.0
4,795,434 - AMB_RS22215 0.46 +0.0
4,795,434 - AMB_RS22215 0.46 -0.5
4,795,434 - AMB_RS22215 0.46 -0.4
4,795,434 - AMB_RS22215 0.46 -1.2
4,795,439 + AMB_RS22215 0.47 +0.0
4,795,439 + AMB_RS22215 0.47 -0.8
4,795,439 + AMB_RS22215 0.47 -1.8
4,795,439 + AMB_RS22215 0.47 -0.6
4,795,439 + AMB_RS22215 0.47 -0.7
4,795,439 + AMB_RS22215 0.47 -0.5
4,795,439 + AMB_RS22215 0.47 -0.8
4,795,439 + AMB_RS22215 0.47 +0.1
4,795,439 + AMB_RS22215 0.47 -1.3
4,795,439 + AMB_RS22215 0.47 +0.9
4,795,439 + AMB_RS22215 0.47 -1.9
4,795,439 + AMB_RS22215 0.47 +0.0
4,795,440 - AMB_RS22215 0.47 -0.3
4,795,440 - AMB_RS22215 0.47 -1.0
4,795,440 - AMB_RS22215 0.47 -2.3
4,795,440 - AMB_RS22215 0.47 -0.1
4,795,440 - AMB_RS22215 0.47 +0.1
4,795,440 - AMB_RS22215 0.47 -0.3
4,795,440 - AMB_RS22215 0.47 -0.6
4,795,440 - AMB_RS22215 0.47 -0.0
4,795,440 - AMB_RS22215 0.47 +1.0
4,795,440 - AMB_RS22215 0.47 -0.3
4,795,440 - AMB_RS22215 0.47 +1.3
4,795,440 - AMB_RS22215 0.47 +0.4
4,795,440 - AMB_RS22215 0.47 -0.4
4,795,656 + -1.4
4,795,656 + -0.4
4,795,656 + -0.3
4,795,656 + -0.3
4,795,656 + -2.7
4,795,656 + -0.9
4,795,656 + +0.1
4,795,656 + -0.4
4,795,656 + -0.2
4,795,656 + -0.3
4,795,657 - -2.8
4,795,657 - +0.4
4,795,657 - +1.2
4,795,657 - +0.1
4,795,657 - -0.3
4,795,657 - -0.1
4,795,657 - -0.4
4,795,657 - +1.9
4,795,657 - +0.8
4,795,657 - -0.6
4,795,657 - +0.0
4,795,657 - +0.1
4,795,973 - AMB_RS22220 0.17 +0.6
4,795,973 - AMB_RS22220 0.17 +0.6
4,796,017 + AMB_RS22220 0.19 -0.4
4,796,017 + AMB_RS22220 0.19 -1.7
4,796,017 + AMB_RS22220 0.19 -0.5
4,796,017 + AMB_RS22220 0.19 -1.3
4,796,017 + AMB_RS22220 0.19 -0.5
4,796,017 + AMB_RS22220 0.19 -1.1
4,796,017 + AMB_RS22220 0.19 +0.8
4,796,017 + AMB_RS22220 0.19 -1.1
4,796,018 - AMB_RS22220 0.19 +0.5
4,796,018 - AMB_RS22220 0.19 +0.1
4,796,018 - AMB_RS22220 0.19 +0.9
4,796,018 - AMB_RS22220 0.19 -0.0

Or see this region's nucleotide sequence