Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19840

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19830 and AMB_RS19835 are separated by 73 nucleotidesAMB_RS19835 and AMB_RS19840 are separated by 110 nucleotidesAMB_RS19840 and AMB_RS19845 are separated by 10 nucleotidesAMB_RS19845 and AMB_RS19850 are separated by 12 nucleotidesAMB_RS19850 and AMB_RS19855 are separated by 12 nucleotides AMB_RS19830: AMB_RS19830 - molybdopterin adenylyltransferase, at 4,332,301 to 4,332,837 _RS19830 AMB_RS19835: AMB_RS19835 - YbjQ family protein, at 4,332,911 to 4,333,234 _RS19835 AMB_RS19840: AMB_RS19840 - hypothetical protein, at 4,333,345 to 4,334,004 _RS19840 AMB_RS19845: AMB_RS19845 - hypothetical protein, at 4,334,015 to 4,334,362 _RS19845 AMB_RS19850: AMB_RS19850 - hypothetical protein, at 4,334,375 to 4,334,668 _RS19850 AMB_RS19855: AMB_RS19855 - PhoH family protein, at 4,334,681 to 4,335,520 _RS19855 Position (kb) 4333 4334 4335Strain fitness (log2 ratio) -2 -1 0 1 2at 4332.960 kb on - strand, within AMB_RS19835at 4333.058 kb on + strand, within AMB_RS19835at 4333.058 kb on + strand, within AMB_RS19835at 4333.059 kb on - strand, within AMB_RS19835at 4333.059 kb on - strand, within AMB_RS19835at 4333.160 kb on + strand, within AMB_RS19835at 4333.323 kb on + strandat 4333.699 kb on + strand, within AMB_RS19840at 4333.699 kb on + strand, within AMB_RS19840at 4333.699 kb on + strand, within AMB_RS19840at 4333.699 kb on + strand, within AMB_RS19840at 4333.700 kb on - strand, within AMB_RS19840at 4333.700 kb on - strand, within AMB_RS19840at 4333.700 kb on - strand, within AMB_RS19840at 4333.700 kb on - strand, within AMB_RS19840at 4333.701 kb on + strand, within AMB_RS19840at 4333.701 kb on + strand, within AMB_RS19840at 4333.702 kb on - strand, within AMB_RS19840at 4334.213 kb on + strand, within AMB_RS19845at 4334.213 kb on + strand, within AMB_RS19845at 4334.213 kb on + strand, within AMB_RS19845at 4334.214 kb on - strand, within AMB_RS19845at 4334.214 kb on - strand, within AMB_RS19845at 4334.214 kb on - strand, within AMB_RS19845at 4334.214 kb on - strand, within AMB_RS19845at 4334.214 kb on - strand, within AMB_RS19845at 4334.361 kb on - strandat 4334.609 kb on + strand, within AMB_RS19850at 4334.609 kb on + strand, within AMB_RS19850at 4334.610 kb on - strand, within AMB_RS19850at 4334.610 kb on - strand, within AMB_RS19850at 4334.610 kb on - strand, within AMB_RS19850at 4334.895 kb on + strand, within AMB_RS19855at 4334.895 kb on + strand, within AMB_RS19855at 4334.895 kb on + strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.956 kb on + strand, within AMB_RS19855at 4334.956 kb on + strand, within AMB_RS19855at 4334.956 kb on + strand, within AMB_RS19855at 4334.957 kb on - strand, within AMB_RS19855at 4334.957 kb on - strand, within AMB_RS19855at 4334.957 kb on - strand, within AMB_RS19855at 4334.957 kb on - strand, within AMB_RS19855at 4334.958 kb on + strand, within AMB_RS19855at 4334.958 kb on + strand, within AMB_RS19855at 4334.958 kb on + strand, within AMB_RS19855at 4334.958 kb on + strand, within AMB_RS19855at 4334.958 kb on + strand, within AMB_RS19855at 4334.959 kb on - strand, within AMB_RS19855at 4334.959 kb on - strand, within AMB_RS19855at 4334.959 kb on - strand, within AMB_RS19855at 4334.959 kb on - strand, within AMB_RS19855at 4334.959 kb on - strand, within AMB_RS19855

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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4,332,960 - AMB_RS19835 0.15 -0.4
4,333,058 + AMB_RS19835 0.45 -0.1
4,333,058 + AMB_RS19835 0.45 +0.5
4,333,059 - AMB_RS19835 0.46 -0.4
4,333,059 - AMB_RS19835 0.46 -0.4
4,333,160 + AMB_RS19835 0.77 +0.2
4,333,323 + +0.2
4,333,699 + AMB_RS19840 0.54 -0.6
4,333,699 + AMB_RS19840 0.54 +0.4
4,333,699 + AMB_RS19840 0.54 -1.6
4,333,699 + AMB_RS19840 0.54 -0.3
4,333,700 - AMB_RS19840 0.54 -0.3
4,333,700 - AMB_RS19840 0.54 -0.5
4,333,700 - AMB_RS19840 0.54 +0.0
4,333,700 - AMB_RS19840 0.54 -0.3
4,333,701 + AMB_RS19840 0.54 -0.2
4,333,701 + AMB_RS19840 0.54 -0.4
4,333,702 - AMB_RS19840 0.54 -0.1
4,334,213 + AMB_RS19845 0.57 -1.1
4,334,213 + AMB_RS19845 0.57 -0.7
4,334,213 + AMB_RS19845 0.57 -0.5
4,334,214 - AMB_RS19845 0.57 -0.1
4,334,214 - AMB_RS19845 0.57 -0.0
4,334,214 - AMB_RS19845 0.57 -1.3
4,334,214 - AMB_RS19845 0.57 -1.8
4,334,214 - AMB_RS19845 0.57 +1.2
4,334,361 - +1.4
4,334,609 + AMB_RS19850 0.80 -0.8
4,334,609 + AMB_RS19850 0.80 -0.7
4,334,610 - AMB_RS19850 0.80 -0.2
4,334,610 - AMB_RS19850 0.80 -1.1
4,334,610 - AMB_RS19850 0.80 -1.3
4,334,895 + AMB_RS19855 0.25 -1.1
4,334,895 + AMB_RS19855 0.25 -0.7
4,334,895 + AMB_RS19855 0.25 -0.5
4,334,896 - AMB_RS19855 0.26 -0.1
4,334,896 - AMB_RS19855 0.26 +0.2
4,334,896 - AMB_RS19855 0.26 +0.8
4,334,896 - AMB_RS19855 0.26 -0.2
4,334,896 - AMB_RS19855 0.26 -0.3
4,334,896 - AMB_RS19855 0.26 -0.3
4,334,896 - AMB_RS19855 0.26 -0.7
4,334,896 - AMB_RS19855 0.26 +0.8
4,334,896 - AMB_RS19855 0.26 -0.3
4,334,896 - AMB_RS19855 0.26 +0.0
4,334,896 - AMB_RS19855 0.26 +0.4
4,334,896 - AMB_RS19855 0.26 +0.8
4,334,956 + AMB_RS19855 0.33 +0.5
4,334,956 + AMB_RS19855 0.33 -0.7
4,334,956 + AMB_RS19855 0.33 -1.4
4,334,957 - AMB_RS19855 0.33 -1.2
4,334,957 - AMB_RS19855 0.33 -0.4
4,334,957 - AMB_RS19855 0.33 -0.2
4,334,957 - AMB_RS19855 0.33 -0.4
4,334,958 + AMB_RS19855 0.33 -0.9
4,334,958 + AMB_RS19855 0.33 +0.2
4,334,958 + AMB_RS19855 0.33 +0.6
4,334,958 + AMB_RS19855 0.33 -2.0
4,334,958 + AMB_RS19855 0.33 +0.5
4,334,959 - AMB_RS19855 0.33 +2.4
4,334,959 - AMB_RS19855 0.33 +0.5
4,334,959 - AMB_RS19855 0.33 -0.6
4,334,959 - AMB_RS19855 0.33 +0.9
4,334,959 - AMB_RS19855 0.33 -0.8

Or see this region's nucleotide sequence