Experiment: without_iron2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19300 and AMB_RS19305 are separated by 142 nucleotides AMB_RS19305 and AMB_RS19310 are separated by 155 nucleotides AMB_RS19310 and AMB_RS19315 are separated by 58 nucleotides
AMB_RS19300: AMB_RS19300 - threonine-phosphate decarboxylase, at 4,211,663 to 4,212,652
_RS19300
AMB_RS19305: AMB_RS19305 - hypothetical protein, at 4,212,795 to 4,213,211
_RS19305
AMB_RS19310: AMB_RS19310 - hypothetical protein, at 4,213,367 to 4,213,741
_RS19310
AMB_RS19315: AMB_RS19315 - acyl-CoA synthetase, at 4,213,800 to 4,215,449
_RS19315
Position (kb) 4213
4214 Strain fitness (log2 ratio) -1
0
1
2 at 4212.660 kb on + strand at 4212.733 kb on + strand at 4212.733 kb on + strand at 4212.734 kb on - strand at 4212.734 kb on - strand at 4212.915 kb on - strand, within AMB_RS19305 at 4212.961 kb on + strand, within AMB_RS19305 at 4212.961 kb on + strand, within AMB_RS19305 at 4212.961 kb on + strand, within AMB_RS19305 at 4212.961 kb on + strand, within AMB_RS19305 at 4212.962 kb on - strand, within AMB_RS19305 at 4212.988 kb on + strand, within AMB_RS19305 at 4212.988 kb on + strand, within AMB_RS19305 at 4213.079 kb on - strand, within AMB_RS19305 at 4213.223 kb on - strand at 4213.236 kb on + strand at 4213.236 kb on + strand at 4213.237 kb on - strand at 4213.237 kb on - strand at 4213.237 kb on - strand at 4213.309 kb on + strand at 4213.310 kb on - strand at 4213.310 kb on - strand at 4213.506 kb on + strand, within AMB_RS19310 at 4213.506 kb on + strand, within AMB_RS19310 at 4213.506 kb on + strand, within AMB_RS19310 at 4213.905 kb on + strand at 4213.906 kb on - strand at 4213.906 kb on - strand at 4214.176 kb on + strand, within AMB_RS19315 at 4214.177 kb on - strand, within AMB_RS19315 at 4214.177 kb on - strand, within AMB_RS19315 at 4214.177 kb on - strand, within AMB_RS19315 at 4214.177 kb on - strand, within AMB_RS19315 at 4214.261 kb on - strand, within AMB_RS19315 at 4214.602 kb on + strand, within AMB_RS19315 at 4214.602 kb on + strand, within AMB_RS19315 at 4214.602 kb on + strand, within AMB_RS19315 at 4214.602 kb on + strand, within AMB_RS19315 at 4214.602 kb on + strand, within AMB_RS19315 at 4214.602 kb on + strand, within AMB_RS19315 at 4214.602 kb on + strand, within AMB_RS19315 at 4214.602 kb on + strand, within AMB_RS19315 at 4214.602 kb on + strand, within AMB_RS19315 at 4214.602 kb on + strand, within AMB_RS19315 at 4214.603 kb on - strand, within AMB_RS19315 at 4214.603 kb on - strand, within AMB_RS19315 at 4214.603 kb on - strand, within AMB_RS19315 at 4214.603 kb on - strand, within AMB_RS19315
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron2 remove 4,212,660 + -0.1 4,212,733 + -1.0 4,212,733 + -0.3 4,212,734 - -0.8 4,212,734 - -0.8 4,212,915 - AMB_RS19305 0.29 +0.0 4,212,961 + AMB_RS19305 0.40 +1.0 4,212,961 + AMB_RS19305 0.40 -0.5 4,212,961 + AMB_RS19305 0.40 -0.0 4,212,961 + AMB_RS19305 0.40 -1.1 4,212,962 - AMB_RS19305 0.40 -0.6 4,212,988 + AMB_RS19305 0.46 +2.5 4,212,988 + AMB_RS19305 0.46 +1.5 4,213,079 - AMB_RS19305 0.68 +0.1 4,213,223 - +0.7 4,213,236 + -0.8 4,213,236 + -1.4 4,213,237 - -0.0 4,213,237 - -0.4 4,213,237 - -0.3 4,213,309 + -0.1 4,213,310 - +0.2 4,213,310 - +0.8 4,213,506 + AMB_RS19310 0.37 +0.2 4,213,506 + AMB_RS19310 0.37 -1.1 4,213,506 + AMB_RS19310 0.37 -0.5 4,213,905 + +0.5 4,213,906 - +0.5 4,213,906 - -0.1 4,214,176 + AMB_RS19315 0.23 -0.0 4,214,177 - AMB_RS19315 0.23 -0.4 4,214,177 - AMB_RS19315 0.23 -0.3 4,214,177 - AMB_RS19315 0.23 +0.9 4,214,177 - AMB_RS19315 0.23 +0.5 4,214,261 - AMB_RS19315 0.28 +0.2 4,214,602 + AMB_RS19315 0.49 -0.3 4,214,602 + AMB_RS19315 0.49 +0.6 4,214,602 + AMB_RS19315 0.49 +1.1 4,214,602 + AMB_RS19315 0.49 -0.2 4,214,602 + AMB_RS19315 0.49 -1.1 4,214,602 + AMB_RS19315 0.49 +1.0 4,214,602 + AMB_RS19315 0.49 +0.3 4,214,602 + AMB_RS19315 0.49 -0.1 4,214,602 + AMB_RS19315 0.49 +0.1 4,214,602 + AMB_RS19315 0.49 +0.3 4,214,603 - AMB_RS19315 0.49 -0.1 4,214,603 - AMB_RS19315 0.49 -0.8 4,214,603 - AMB_RS19315 0.49 -0.1 4,214,603 - AMB_RS19315 0.49 -0.2
Or see this region's nucleotide sequence