Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14530

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14520 and AMB_RS14525 overlap by 40 nucleotidesAMB_RS14525 and AMB_RS14530 overlap by 86 nucleotidesAMB_RS14530 and AMB_RS14535 overlap by 4 nucleotides AMB_RS14520: AMB_RS14520 - 1,4-beta-N-acetylmuramidase, at 3,083,393 to 3,084,229 _RS14520 AMB_RS14525: AMB_RS14525 - xylanase/chitin deacetylase, at 3,084,190 to 3,085,071 _RS14525 AMB_RS14530: AMB_RS14530 - acyl dehydratase, at 3,084,986 to 3,085,453 _RS14530 AMB_RS14535: AMB_RS14535 - MFS transporter, at 3,085,450 to 3,086,739 _RS14535 Position (kb) 3084 3085 3086Strain fitness (log2 ratio) -1 0 1at 3084.080 kb on + strand, within AMB_RS14520at 3084.080 kb on + strand, within AMB_RS14520at 3084.192 kb on - strandat 3084.501 kb on - strand, within AMB_RS14525at 3085.398 kb on + strand, within AMB_RS14530at 3085.398 kb on + strand, within AMB_RS14530at 3085.398 kb on + strand, within AMB_RS14530at 3085.398 kb on + strand, within AMB_RS14530at 3085.443 kb on + strandat 3085.444 kb on - strandat 3085.731 kb on - strand, within AMB_RS14535at 3085.799 kb on - strand, within AMB_RS14535at 3085.817 kb on + strand, within AMB_RS14535at 3085.817 kb on + strand, within AMB_RS14535at 3086.011 kb on - strand, within AMB_RS14535

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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3,084,080 + AMB_RS14520 0.82 -0.0
3,084,080 + AMB_RS14520 0.82 +0.2
3,084,192 - +0.2
3,084,501 - AMB_RS14525 0.35 -0.7
3,085,398 + AMB_RS14530 0.88 +0.5
3,085,398 + AMB_RS14530 0.88 +0.1
3,085,398 + AMB_RS14530 0.88 -1.0
3,085,398 + AMB_RS14530 0.88 -0.5
3,085,443 + +0.8
3,085,444 - +0.9
3,085,731 - AMB_RS14535 0.22 -0.1
3,085,799 - AMB_RS14535 0.27 +0.2
3,085,817 + AMB_RS14535 0.28 -0.3
3,085,817 + AMB_RS14535 0.28 -1.1
3,086,011 - AMB_RS14535 0.43 -1.3

Or see this region's nucleotide sequence