Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07035

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07030 and AMB_RS07035 overlap by 4 nucleotidesAMB_RS07035 and AMB_RS07040 overlap by 191 nucleotides AMB_RS07030: AMB_RS07030 - 1-aminocyclopropane-1-carboxylate deaminase, at 1,508,699 to 1,509,853 _RS07030 AMB_RS07035: AMB_RS07035 - gamma-glutamyltransferase, at 1,509,850 to 1,511,481 _RS07035 AMB_RS07040: AMB_RS07040 - peptidase, at 1,511,291 to 1,512,838 _RS07040 Position (kb) 1509 1510 1511 1512Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1508.893 kb on - strand, within AMB_RS07030at 1508.893 kb on - strand, within AMB_RS07030at 1508.893 kb on - strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1509.063 kb on + strand, within AMB_RS07030at 1509.063 kb on + strand, within AMB_RS07030at 1509.064 kb on - strand, within AMB_RS07030at 1509.064 kb on - strand, within AMB_RS07030at 1509.064 kb on - strand, within AMB_RS07030at 1509.147 kb on + strand, within AMB_RS07030at 1509.148 kb on - strand, within AMB_RS07030at 1509.148 kb on - strand, within AMB_RS07030at 1509.150 kb on + strand, within AMB_RS07030at 1509.150 kb on + strand, within AMB_RS07030at 1509.151 kb on - strand, within AMB_RS07030at 1509.151 kb on - strand, within AMB_RS07030at 1509.225 kb on + strand, within AMB_RS07030at 1509.225 kb on + strand, within AMB_RS07030at 1509.225 kb on + strand, within AMB_RS07030at 1509.225 kb on + strand, within AMB_RS07030at 1509.226 kb on - strand, within AMB_RS07030at 1509.226 kb on - strand, within AMB_RS07030at 1509.226 kb on - strand, within AMB_RS07030at 1509.226 kb on - strand, within AMB_RS07030at 1509.226 kb on - strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.241 kb on - strand, within AMB_RS07030at 1509.241 kb on - strand, within AMB_RS07030at 1509.600 kb on + strand, within AMB_RS07030at 1509.600 kb on + strand, within AMB_RS07030at 1509.600 kb on + strand, within AMB_RS07030at 1509.600 kb on + strand, within AMB_RS07030at 1509.601 kb on - strand, within AMB_RS07030at 1509.663 kb on + strand, within AMB_RS07030at 1509.664 kb on - strand, within AMB_RS07030at 1509.664 kb on - strand, within AMB_RS07030at 1509.664 kb on - strand, within AMB_RS07030at 1509.713 kb on - strand, within AMB_RS07030at 1509.713 kb on - strand, within AMB_RS07030at 1509.713 kb on - strand, within AMB_RS07030at 1509.713 kb on - strand, within AMB_RS07030at 1509.944 kb on + strandat 1509.944 kb on + strandat 1509.944 kb on + strandat 1509.945 kb on - strandat 1509.945 kb on - strandat 1510.267 kb on + strand, within AMB_RS07035at 1510.267 kb on + strand, within AMB_RS07035at 1510.267 kb on + strand, within AMB_RS07035at 1510.267 kb on + strand, within AMB_RS07035at 1510.267 kb on + strand, within AMB_RS07035at 1510.267 kb on + strand, within AMB_RS07035at 1510.268 kb on - strand, within AMB_RS07035at 1510.268 kb on - strand, within AMB_RS07035at 1510.268 kb on - strand, within AMB_RS07035at 1510.268 kb on - strand, within AMB_RS07035at 1510.268 kb on - strand, within AMB_RS07035at 1510.436 kb on + strand, within AMB_RS07035at 1510.436 kb on + strand, within AMB_RS07035at 1510.832 kb on - strand, within AMB_RS07035at 1510.855 kb on + strand, within AMB_RS07035at 1510.855 kb on + strand, within AMB_RS07035at 1510.855 kb on + strand, within AMB_RS07035at 1510.855 kb on + strand, within AMB_RS07035at 1510.855 kb on + strand, within AMB_RS07035at 1510.856 kb on - strand, within AMB_RS07035at 1510.856 kb on - strand, within AMB_RS07035at 1511.042 kb on + strand, within AMB_RS07035at 1511.060 kb on + strand, within AMB_RS07035at 1511.160 kb on + strand, within AMB_RS07035at 1511.161 kb on - strand, within AMB_RS07035at 1511.167 kb on + strand, within AMB_RS07035at 1511.167 kb on + strand, within AMB_RS07035at 1511.168 kb on - strand, within AMB_RS07035at 1511.168 kb on - strand, within AMB_RS07035at 1511.168 kb on - strand, within AMB_RS07035at 1511.168 kb on - strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.171 kb on - strand, within AMB_RS07035at 1511.171 kb on - strand, within AMB_RS07035at 1511.171 kb on - strand, within AMB_RS07035at 1511.232 kb on - strand, within AMB_RS07035at 1511.232 kb on - strand, within AMB_RS07035at 1511.232 kb on - strand, within AMB_RS07035at 1511.232 kb on - strand, within AMB_RS07035at 1512.263 kb on + strand, within AMB_RS07040at 1512.390 kb on - strand, within AMB_RS07040

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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1,508,893 - AMB_RS07030 0.17 -0.5
1,508,893 - AMB_RS07030 0.17 -1.4
1,508,893 - AMB_RS07030 0.17 -0.3
1,508,898 + AMB_RS07030 0.17 -0.8
1,508,898 + AMB_RS07030 0.17 -0.4
1,508,898 + AMB_RS07030 0.17 +0.0
1,508,898 + AMB_RS07030 0.17 -0.3
1,508,898 + AMB_RS07030 0.17 -1.2
1,508,898 + AMB_RS07030 0.17 +0.1
1,508,898 + AMB_RS07030 0.17 +0.1
1,508,898 + AMB_RS07030 0.17 +1.3
1,508,899 - AMB_RS07030 0.17 -0.2
1,508,899 - AMB_RS07030 0.17 +0.2
1,508,899 - AMB_RS07030 0.17 +0.2
1,508,899 - AMB_RS07030 0.17 -0.1
1,508,899 - AMB_RS07030 0.17 -0.5
1,508,899 - AMB_RS07030 0.17 +0.2
1,508,899 - AMB_RS07030 0.17 +0.4
1,509,063 + AMB_RS07030 0.32 -0.4
1,509,063 + AMB_RS07030 0.32 -0.5
1,509,064 - AMB_RS07030 0.32 -3.1
1,509,064 - AMB_RS07030 0.32 -0.9
1,509,064 - AMB_RS07030 0.32 +0.8
1,509,147 + AMB_RS07030 0.39 -0.1
1,509,148 - AMB_RS07030 0.39 -1.6
1,509,148 - AMB_RS07030 0.39 +0.2
1,509,150 + AMB_RS07030 0.39 +0.1
1,509,150 + AMB_RS07030 0.39 +0.9
1,509,151 - AMB_RS07030 0.39 -0.1
1,509,151 - AMB_RS07030 0.39 -0.5
1,509,225 + AMB_RS07030 0.46 +0.5
1,509,225 + AMB_RS07030 0.46 +0.4
1,509,225 + AMB_RS07030 0.46 +0.4
1,509,225 + AMB_RS07030 0.46 -0.1
1,509,226 - AMB_RS07030 0.46 -0.6
1,509,226 - AMB_RS07030 0.46 +1.4
1,509,226 - AMB_RS07030 0.46 +0.3
1,509,226 - AMB_RS07030 0.46 -0.6
1,509,226 - AMB_RS07030 0.46 -0.7
1,509,240 + AMB_RS07030 0.47 +0.1
1,509,240 + AMB_RS07030 0.47 -0.9
1,509,240 + AMB_RS07030 0.47 -1.0
1,509,240 + AMB_RS07030 0.47 +0.6
1,509,240 + AMB_RS07030 0.47 +0.1
1,509,240 + AMB_RS07030 0.47 -1.4
1,509,241 - AMB_RS07030 0.47 -0.8
1,509,241 - AMB_RS07030 0.47 +0.7
1,509,600 + AMB_RS07030 0.78 -0.2
1,509,600 + AMB_RS07030 0.78 -0.1
1,509,600 + AMB_RS07030 0.78 +0.1
1,509,600 + AMB_RS07030 0.78 -0.6
1,509,601 - AMB_RS07030 0.78 -0.1
1,509,663 + AMB_RS07030 0.83 -0.7
1,509,664 - AMB_RS07030 0.84 -0.5
1,509,664 - AMB_RS07030 0.84 -0.2
1,509,664 - AMB_RS07030 0.84 +0.3
1,509,713 - AMB_RS07030 0.88 -1.0
1,509,713 - AMB_RS07030 0.88 -0.1
1,509,713 - AMB_RS07030 0.88 +0.0
1,509,713 - AMB_RS07030 0.88 +0.0
1,509,944 + +1.1
1,509,944 + +0.5
1,509,944 + -0.0
1,509,945 - -0.0
1,509,945 - +0.3
1,510,267 + AMB_RS07035 0.26 -0.2
1,510,267 + AMB_RS07035 0.26 +1.8
1,510,267 + AMB_RS07035 0.26 +0.0
1,510,267 + AMB_RS07035 0.26 +0.2
1,510,267 + AMB_RS07035 0.26 +0.0
1,510,267 + AMB_RS07035 0.26 -0.0
1,510,268 - AMB_RS07035 0.26 -0.0
1,510,268 - AMB_RS07035 0.26 +1.1
1,510,268 - AMB_RS07035 0.26 +0.2
1,510,268 - AMB_RS07035 0.26 +0.4
1,510,268 - AMB_RS07035 0.26 -0.3
1,510,436 + AMB_RS07035 0.36 +0.5
1,510,436 + AMB_RS07035 0.36 -1.0
1,510,832 - AMB_RS07035 0.60 -0.0
1,510,855 + AMB_RS07035 0.62 -1.2
1,510,855 + AMB_RS07035 0.62 +0.7
1,510,855 + AMB_RS07035 0.62 +0.3
1,510,855 + AMB_RS07035 0.62 -0.7
1,510,855 + AMB_RS07035 0.62 -0.6
1,510,856 - AMB_RS07035 0.62 +0.2
1,510,856 - AMB_RS07035 0.62 -0.5
1,511,042 + AMB_RS07035 0.73 -0.3
1,511,060 + AMB_RS07035 0.74 -2.0
1,511,160 + AMB_RS07035 0.80 -0.2
1,511,161 - AMB_RS07035 0.80 -0.7
1,511,167 + AMB_RS07035 0.81 -0.7
1,511,167 + AMB_RS07035 0.81 -0.9
1,511,168 - AMB_RS07035 0.81 -0.3
1,511,168 - AMB_RS07035 0.81 -1.8
1,511,168 - AMB_RS07035 0.81 +0.4
1,511,168 - AMB_RS07035 0.81 +0.6
1,511,170 + AMB_RS07035 0.81 +1.2
1,511,170 + AMB_RS07035 0.81 +0.4
1,511,170 + AMB_RS07035 0.81 -0.1
1,511,170 + AMB_RS07035 0.81 -0.1
1,511,170 + AMB_RS07035 0.81 +0.2
1,511,170 + AMB_RS07035 0.81 +0.2
1,511,170 + AMB_RS07035 0.81 +2.2
1,511,170 + AMB_RS07035 0.81 +0.2
1,511,170 + AMB_RS07035 0.81 -0.2
1,511,170 + AMB_RS07035 0.81 +1.2
1,511,171 - AMB_RS07035 0.81 -0.4
1,511,171 - AMB_RS07035 0.81 -0.3
1,511,171 - AMB_RS07035 0.81 -0.9
1,511,232 - AMB_RS07035 0.85 -0.2
1,511,232 - AMB_RS07035 0.85 +1.3
1,511,232 - AMB_RS07035 0.85 +0.9
1,511,232 - AMB_RS07035 0.85 +0.2
1,512,263 + AMB_RS07040 0.63 -1.6
1,512,390 - AMB_RS07040 0.71 -1.6

Or see this region's nucleotide sequence