Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06665

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06655 and AMB_RS06660 are separated by 119 nucleotidesAMB_RS06660 and AMB_RS06665 overlap by 12 nucleotidesAMB_RS06665 and AMB_RS06670 overlap by 1 nucleotidesAMB_RS06670 and AMB_RS06675 are separated by 27 nucleotidesAMB_RS06675 and AMB_RS06680 are separated by 139 nucleotides AMB_RS06655: AMB_RS06655 - spore maturation protein, at 1,427,437 to 1,428,672 _RS06655 AMB_RS06660: AMB_RS06660 - hypothetical protein, at 1,428,792 to 1,429,373 _RS06660 AMB_RS06665: AMB_RS06665 - LrgB family protein, at 1,429,362 to 1,430,081 _RS06665 AMB_RS06670: AMB_RS06670 - CidA/LrgA family protein, at 1,430,081 to 1,430,434 _RS06670 AMB_RS06675: AMB_RS06675 - membrane protein, at 1,430,462 to 1,430,746 _RS06675 AMB_RS06680: AMB_RS06680 - orotate phosphoribosyltransferase, at 1,430,886 to 1,431,578 _RS06680 Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -3 -2 -1 0 1at 1428.704 kb on - strandat 1428.754 kb on - strandat 1428.754 kb on - strandat 1428.773 kb on - strandat 1428.809 kb on + strandat 1428.810 kb on - strandat 1429.077 kb on + strand, within AMB_RS06660at 1429.077 kb on + strand, within AMB_RS06660at 1429.077 kb on + strand, within AMB_RS06660at 1429.078 kb on - strand, within AMB_RS06660at 1429.078 kb on - strand, within AMB_RS06660at 1429.078 kb on - strand, within AMB_RS06660at 1429.078 kb on - strand, within AMB_RS06660at 1429.372 kb on - strandat 1429.813 kb on + strand, within AMB_RS06665at 1430.002 kb on + strand, within AMB_RS06665at 1430.003 kb on - strand, within AMB_RS06665at 1430.050 kb on + strandat 1430.050 kb on + strandat 1430.050 kb on + strandat 1430.050 kb on + strandat 1430.050 kb on + strandat 1430.050 kb on + strandat 1430.051 kb on - strandat 1430.099 kb on - strandat 1430.246 kb on + strand, within AMB_RS06670at 1430.246 kb on + strand, within AMB_RS06670at 1430.247 kb on - strand, within AMB_RS06670at 1430.422 kb on + strandat 1430.422 kb on + strandat 1430.423 kb on - strandat 1430.423 kb on - strandat 1430.423 kb on - strandat 1430.423 kb on - strandat 1430.423 kb on - strandat 1430.423 kb on - strandat 1430.424 kb on + strandat 1430.424 kb on + strandat 1430.424 kb on + strandat 1430.425 kb on - strandat 1430.425 kb on - strandat 1430.491 kb on - strand, within AMB_RS06675at 1430.513 kb on - strand, within AMB_RS06675at 1430.550 kb on + strand, within AMB_RS06675at 1430.550 kb on + strand, within AMB_RS06675at 1430.574 kb on + strand, within AMB_RS06675at 1430.574 kb on + strand, within AMB_RS06675at 1430.574 kb on + strand, within AMB_RS06675at 1430.575 kb on - strand, within AMB_RS06675at 1430.575 kb on - strand, within AMB_RS06675at 1430.575 kb on - strand, within AMB_RS06675at 1430.575 kb on - strand, within AMB_RS06675at 1430.575 kb on - strand, within AMB_RS06675at 1430.575 kb on - strand, within AMB_RS06675at 1430.575 kb on - strand, within AMB_RS06675at 1430.575 kb on - strand, within AMB_RS06675at 1430.575 kb on - strand, within AMB_RS06675at 1430.575 kb on - strand, within AMB_RS06675at 1430.627 kb on + strand, within AMB_RS06675at 1430.628 kb on - strand, within AMB_RS06675at 1430.800 kb on - strandat 1430.819 kb on + strandat 1430.819 kb on + strandat 1430.819 kb on + strandat 1430.819 kb on + strandat 1430.820 kb on - strandat 1430.820 kb on - strandat 1430.820 kb on - strandat 1430.821 kb on + strandat 1430.822 kb on - strandat 1430.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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1,428,704 - -0.6
1,428,754 - +1.0
1,428,754 - -1.8
1,428,773 - -0.6
1,428,809 + -1.0
1,428,810 - -1.1
1,429,077 + AMB_RS06660 0.49 -0.6
1,429,077 + AMB_RS06660 0.49 +0.1
1,429,077 + AMB_RS06660 0.49 -0.9
1,429,078 - AMB_RS06660 0.49 -0.0
1,429,078 - AMB_RS06660 0.49 -0.1
1,429,078 - AMB_RS06660 0.49 -0.2
1,429,078 - AMB_RS06660 0.49 +1.4
1,429,372 - -1.1
1,429,813 + AMB_RS06665 0.63 -0.4
1,430,002 + AMB_RS06665 0.89 -1.3
1,430,003 - AMB_RS06665 0.89 -0.7
1,430,050 + -0.2
1,430,050 + -1.3
1,430,050 + -1.2
1,430,050 + +0.4
1,430,050 + -1.2
1,430,050 + -0.3
1,430,051 - -0.0
1,430,099 - -0.3
1,430,246 + AMB_RS06670 0.47 -0.3
1,430,246 + AMB_RS06670 0.47 -0.5
1,430,247 - AMB_RS06670 0.47 +0.9
1,430,422 + -1.1
1,430,422 + -0.0
1,430,423 - +1.5
1,430,423 - -0.4
1,430,423 - +0.2
1,430,423 - -0.4
1,430,423 - -0.3
1,430,423 - -0.0
1,430,424 + -0.1
1,430,424 + +0.4
1,430,424 + -0.3
1,430,425 - -0.3
1,430,425 - -0.2
1,430,491 - AMB_RS06675 0.10 +0.6
1,430,513 - AMB_RS06675 0.18 -0.2
1,430,550 + AMB_RS06675 0.31 -0.7
1,430,550 + AMB_RS06675 0.31 -0.9
1,430,574 + AMB_RS06675 0.39 -1.2
1,430,574 + AMB_RS06675 0.39 -0.1
1,430,574 + AMB_RS06675 0.39 -0.2
1,430,575 - AMB_RS06675 0.40 +0.7
1,430,575 - AMB_RS06675 0.40 -0.2
1,430,575 - AMB_RS06675 0.40 -2.8
1,430,575 - AMB_RS06675 0.40 +1.0
1,430,575 - AMB_RS06675 0.40 -0.6
1,430,575 - AMB_RS06675 0.40 +0.6
1,430,575 - AMB_RS06675 0.40 -0.6
1,430,575 - AMB_RS06675 0.40 +0.5
1,430,575 - AMB_RS06675 0.40 -0.5
1,430,575 - AMB_RS06675 0.40 +0.4
1,430,627 + AMB_RS06675 0.58 -0.2
1,430,628 - AMB_RS06675 0.58 +0.2
1,430,800 - +0.5
1,430,819 + -0.4
1,430,819 + -1.9
1,430,819 + +0.9
1,430,819 + -0.2
1,430,820 - +0.4
1,430,820 - -1.8
1,430,820 - +1.0
1,430,821 + -1.3
1,430,822 - -0.2
1,430,822 - +1.4

Or see this region's nucleotide sequence