Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04630

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04620 and AMB_RS04625 are separated by 88 nucleotidesAMB_RS04625 and AMB_RS04630 are separated by 105 nucleotidesAMB_RS04630 and AMB_RS04635 are separated by 270 nucleotides AMB_RS04620: AMB_RS04620 - 23S ribosomal RNA, at 966,932 to 969,685 _RS04620 AMB_RS04625: AMB_RS04625 - 5S ribosomal RNA, at 969,774 to 969,888 _RS04625 AMB_RS04630: AMB_RS04630 - tRNA-Met, at 969,994 to 970,070 _RS04630 AMB_RS04635: AMB_RS04635 - site-specific integrase, at 970,341 to 971,309 _RS04635 Position (kb) 969 970 971Strain fitness (log2 ratio) -2 -1 0 1at 970.030 kb on + strand, within AMB_RS04630at 970.136 kb on - strandat 970.474 kb on - strand, within AMB_RS04635at 970.518 kb on + strand, within AMB_RS04635at 970.518 kb on + strand, within AMB_RS04635at 970.519 kb on - strand, within AMB_RS04635at 970.519 kb on - strand, within AMB_RS04635at 970.519 kb on - strand, within AMB_RS04635at 970.646 kb on + strand, within AMB_RS04635at 970.668 kb on + strand, within AMB_RS04635at 970.668 kb on + strand, within AMB_RS04635at 970.670 kb on + strand, within AMB_RS04635at 970.727 kb on + strand, within AMB_RS04635at 970.727 kb on + strand, within AMB_RS04635at 970.728 kb on - strand, within AMB_RS04635at 971.014 kb on + strand, within AMB_RS04635

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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970,030 + AMB_RS04630 0.47 -1.0
970,136 - -0.1
970,474 - AMB_RS04635 0.14 -1.0
970,518 + AMB_RS04635 0.18 -1.2
970,518 + AMB_RS04635 0.18 -2.0
970,519 - AMB_RS04635 0.18 +1.0
970,519 - AMB_RS04635 0.18 +1.2
970,519 - AMB_RS04635 0.18 -0.4
970,646 + AMB_RS04635 0.31 +0.1
970,668 + AMB_RS04635 0.34 -0.1
970,668 + AMB_RS04635 0.34 -0.2
970,670 + AMB_RS04635 0.34 +0.1
970,727 + AMB_RS04635 0.40 -0.2
970,727 + AMB_RS04635 0.40 -1.5
970,728 - AMB_RS04635 0.40 +1.4
971,014 + AMB_RS04635 0.69 -0.6

Or see this region's nucleotide sequence