Experiment: without_iron2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04175 and AMB_RS04180 overlap by 4 nucleotides AMB_RS04180 and AMB_RS04185 are separated by 183 nucleotides
AMB_RS04175: AMB_RS04175 - alpha-E domain-containing protein, at 874,332 to 875,303
_RS04175
AMB_RS04180: AMB_RS04180 - circularly permuted type 2 ATP-grasp protein, at 875,300 to 876,775
_RS04180
AMB_RS04185: AMB_RS04185 - IMP dehydrogenase, at 876,959 to 880,285
_RS04185
Position (kb) 875
876
877 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 874.534 kb on + strand, within AMB_RS04175 at 874.535 kb on - strand, within AMB_RS04175 at 874.535 kb on - strand, within AMB_RS04175 at 874.678 kb on + strand, within AMB_RS04175 at 874.760 kb on + strand, within AMB_RS04175 at 874.760 kb on + strand, within AMB_RS04175 at 874.761 kb on - strand, within AMB_RS04175 at 874.761 kb on - strand, within AMB_RS04175 at 874.761 kb on - strand, within AMB_RS04175 at 874.761 kb on - strand, within AMB_RS04175 at 874.761 kb on - strand, within AMB_RS04175 at 874.765 kb on + strand, within AMB_RS04175 at 874.765 kb on + strand, within AMB_RS04175 at 874.765 kb on + strand, within AMB_RS04175 at 874.765 kb on + strand, within AMB_RS04175 at 874.765 kb on + strand, within AMB_RS04175 at 874.765 kb on + strand, within AMB_RS04175 at 874.766 kb on - strand, within AMB_RS04175 at 874.766 kb on - strand, within AMB_RS04175 at 874.766 kb on - strand, within AMB_RS04175 at 874.766 kb on - strand, within AMB_RS04175 at 874.766 kb on - strand, within AMB_RS04175 at 874.766 kb on - strand, within AMB_RS04175 at 874.766 kb on - strand, within AMB_RS04175 at 874.825 kb on + strand, within AMB_RS04175 at 874.825 kb on + strand, within AMB_RS04175 at 874.825 kb on + strand, within AMB_RS04175 at 874.825 kb on + strand, within AMB_RS04175 at 874.825 kb on + strand, within AMB_RS04175 at 874.825 kb on + strand, within AMB_RS04175 at 874.826 kb on - strand, within AMB_RS04175 at 874.826 kb on - strand, within AMB_RS04175 at 874.826 kb on - strand, within AMB_RS04175 at 874.831 kb on + strand, within AMB_RS04175 at 874.831 kb on + strand, within AMB_RS04175 at 874.831 kb on + strand, within AMB_RS04175 at 874.831 kb on + strand, within AMB_RS04175 at 874.831 kb on + strand, within AMB_RS04175 at 874.832 kb on - strand, within AMB_RS04175 at 874.832 kb on - strand, within AMB_RS04175 at 874.832 kb on - strand, within AMB_RS04175 at 874.832 kb on - strand, within AMB_RS04175 at 874.832 kb on - strand, within AMB_RS04175 at 874.832 kb on - strand, within AMB_RS04175 at 874.849 kb on + strand, within AMB_RS04175 at 875.087 kb on - strand, within AMB_RS04175 at 875.087 kb on - strand, within AMB_RS04175 at 875.087 kb on - strand, within AMB_RS04175 at 875.087 kb on - strand, within AMB_RS04175 at 875.087 kb on - strand, within AMB_RS04175 at 875.251 kb on + strand at 875.251 kb on + strand at 875.251 kb on + strand at 875.251 kb on + strand at 875.251 kb on + strand at 875.251 kb on + strand at 875.252 kb on - strand at 875.252 kb on - strand at 875.252 kb on - strand at 875.252 kb on - strand at 875.330 kb on - strand at 875.470 kb on + strand, within AMB_RS04180 at 875.471 kb on - strand, within AMB_RS04180 at 875.471 kb on - strand, within AMB_RS04180 at 875.526 kb on + strand, within AMB_RS04180 at 875.526 kb on + strand, within AMB_RS04180 at 875.526 kb on + strand, within AMB_RS04180 at 875.526 kb on + strand, within AMB_RS04180 at 875.526 kb on + strand, within AMB_RS04180 at 875.526 kb on + strand, within AMB_RS04180 at 875.526 kb on + strand, within AMB_RS04180 at 875.527 kb on - strand, within AMB_RS04180 at 875.527 kb on - strand, within AMB_RS04180 at 875.527 kb on - strand, within AMB_RS04180 at 875.527 kb on - strand, within AMB_RS04180 at 875.608 kb on - strand, within AMB_RS04180 at 875.664 kb on + strand, within AMB_RS04180 at 875.664 kb on + strand, within AMB_RS04180 at 875.664 kb on + strand, within AMB_RS04180 at 875.664 kb on + strand, within AMB_RS04180 at 875.664 kb on + strand, within AMB_RS04180 at 875.664 kb on + strand, within AMB_RS04180 at 875.665 kb on - strand, within AMB_RS04180 at 875.665 kb on - strand, within AMB_RS04180 at 875.665 kb on - strand, within AMB_RS04180 at 875.665 kb on - strand, within AMB_RS04180 at 875.665 kb on - strand, within AMB_RS04180 at 875.733 kb on + strand, within AMB_RS04180 at 875.733 kb on + strand, within AMB_RS04180 at 875.733 kb on + strand, within AMB_RS04180 at 875.734 kb on - strand, within AMB_RS04180 at 875.736 kb on + strand, within AMB_RS04180 at 875.736 kb on + strand, within AMB_RS04180 at 875.736 kb on + strand, within AMB_RS04180 at 875.737 kb on - strand, within AMB_RS04180 at 875.737 kb on - strand, within AMB_RS04180 at 875.737 kb on - strand, within AMB_RS04180 at 875.757 kb on + strand, within AMB_RS04180 at 875.757 kb on + strand, within AMB_RS04180 at 875.757 kb on + strand, within AMB_RS04180 at 875.757 kb on + strand, within AMB_RS04180 at 875.757 kb on + strand, within AMB_RS04180 at 875.757 kb on + strand, within AMB_RS04180 at 875.757 kb on + strand, within AMB_RS04180 at 875.757 kb on + strand, within AMB_RS04180 at 875.757 kb on + strand, within AMB_RS04180 at 875.758 kb on - strand, within AMB_RS04180 at 875.758 kb on - strand, within AMB_RS04180 at 875.758 kb on - strand, within AMB_RS04180 at 875.758 kb on - strand, within AMB_RS04180 at 875.758 kb on - strand, within AMB_RS04180 at 875.758 kb on - strand, within AMB_RS04180 at 875.758 kb on - strand, within AMB_RS04180 at 875.758 kb on - strand, within AMB_RS04180 at 875.758 kb on - strand, within AMB_RS04180 at 875.763 kb on + strand, within AMB_RS04180 at 875.763 kb on + strand, within AMB_RS04180 at 875.763 kb on + strand, within AMB_RS04180 at 875.763 kb on + strand, within AMB_RS04180 at 875.763 kb on + strand, within AMB_RS04180 at 875.763 kb on + strand, within AMB_RS04180 at 875.764 kb on - strand, within AMB_RS04180 at 875.913 kb on + strand, within AMB_RS04180 at 875.913 kb on + strand, within AMB_RS04180 at 875.913 kb on + strand, within AMB_RS04180 at 875.913 kb on + strand, within AMB_RS04180 at 875.913 kb on + strand, within AMB_RS04180 at 875.913 kb on + strand, within AMB_RS04180 at 875.913 kb on + strand, within AMB_RS04180 at 875.914 kb on - strand, within AMB_RS04180 at 875.914 kb on - strand, within AMB_RS04180 at 875.914 kb on - strand, within AMB_RS04180 at 875.914 kb on - strand, within AMB_RS04180 at 875.914 kb on - strand, within AMB_RS04180 at 875.955 kb on + strand, within AMB_RS04180 at 875.955 kb on + strand, within AMB_RS04180 at 875.955 kb on + strand, within AMB_RS04180 at 875.955 kb on + strand, within AMB_RS04180 at 875.955 kb on + strand, within AMB_RS04180 at 875.956 kb on - strand, within AMB_RS04180 at 875.956 kb on - strand, within AMB_RS04180 at 875.956 kb on - strand, within AMB_RS04180 at 876.051 kb on + strand, within AMB_RS04180 at 876.051 kb on + strand, within AMB_RS04180 at 876.052 kb on - strand, within AMB_RS04180 at 876.052 kb on - strand, within AMB_RS04180 at 876.052 kb on - strand, within AMB_RS04180 at 876.052 kb on - strand, within AMB_RS04180 at 876.138 kb on + strand, within AMB_RS04180 at 876.138 kb on + strand, within AMB_RS04180 at 876.138 kb on + strand, within AMB_RS04180 at 876.219 kb on + strand, within AMB_RS04180 at 876.219 kb on + strand, within AMB_RS04180 at 876.219 kb on + strand, within AMB_RS04180 at 876.219 kb on + strand, within AMB_RS04180 at 876.220 kb on - strand, within AMB_RS04180 at 876.220 kb on - strand, within AMB_RS04180 at 876.220 kb on - strand, within AMB_RS04180 at 876.220 kb on - strand, within AMB_RS04180 at 876.220 kb on - strand, within AMB_RS04180 at 876.312 kb on + strand, within AMB_RS04180 at 876.312 kb on + strand, within AMB_RS04180 at 876.312 kb on + strand, within AMB_RS04180 at 876.312 kb on + strand, within AMB_RS04180 at 876.313 kb on - strand, within AMB_RS04180 at 876.313 kb on - strand, within AMB_RS04180 at 876.420 kb on + strand, within AMB_RS04180 at 876.420 kb on + strand, within AMB_RS04180 at 876.421 kb on - strand, within AMB_RS04180 at 876.558 kb on + strand, within AMB_RS04180 at 876.559 kb on - strand, within AMB_RS04180 at 876.559 kb on - strand, within AMB_RS04180 at 876.559 kb on - strand, within AMB_RS04180 at 876.578 kb on + strand, within AMB_RS04180 at 876.578 kb on + strand, within AMB_RS04180 at 876.579 kb on - strand, within AMB_RS04180 at 876.579 kb on - strand, within AMB_RS04180 at 876.579 kb on - strand, within AMB_RS04180 at 876.726 kb on + strand at 876.726 kb on + strand at 876.775 kb on + strand at 876.775 kb on + strand at 876.776 kb on - strand at 876.807 kb on - strand at 876.914 kb on + strand at 876.914 kb on + strand at 876.919 kb on + strand at 876.985 kb on + strand at 876.995 kb on + strand at 876.996 kb on - strand at 876.997 kb on + strand at 876.997 kb on + strand at 877.079 kb on + strand at 877.079 kb on + strand at 877.274 kb on + strand at 877.347 kb on - strand, within AMB_RS04185 at 877.434 kb on - strand, within AMB_RS04185 at 877.434 kb on - strand, within AMB_RS04185 at 877.665 kb on - strand, within AMB_RS04185 at 877.729 kb on + strand, within AMB_RS04185 at 877.729 kb on + strand, within AMB_RS04185 at 877.730 kb on - strand, within AMB_RS04185 at 877.771 kb on + strand, within AMB_RS04185
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron2 remove 874,534 + AMB_RS04175 0.21 -0.3 874,535 - AMB_RS04175 0.21 -1.1 874,535 - AMB_RS04175 0.21 -1.2 874,678 + AMB_RS04175 0.36 +0.3 874,760 + AMB_RS04175 0.44 +0.0 874,760 + AMB_RS04175 0.44 -0.7 874,761 - AMB_RS04175 0.44 -0.9 874,761 - AMB_RS04175 0.44 -0.8 874,761 - AMB_RS04175 0.44 -2.7 874,761 - AMB_RS04175 0.44 -0.3 874,761 - AMB_RS04175 0.44 -0.8 874,765 + AMB_RS04175 0.45 +0.9 874,765 + AMB_RS04175 0.45 +0.1 874,765 + AMB_RS04175 0.45 -0.7 874,765 + AMB_RS04175 0.45 -0.7 874,765 + AMB_RS04175 0.45 -0.8 874,765 + AMB_RS04175 0.45 +0.2 874,766 - AMB_RS04175 0.45 -1.1 874,766 - AMB_RS04175 0.45 -0.7 874,766 - AMB_RS04175 0.45 +0.0 874,766 - AMB_RS04175 0.45 -2.3 874,766 - AMB_RS04175 0.45 -0.6 874,766 - AMB_RS04175 0.45 -0.7 874,766 - AMB_RS04175 0.45 -0.4 874,825 + AMB_RS04175 0.51 +0.0 874,825 + AMB_RS04175 0.51 -0.8 874,825 + AMB_RS04175 0.51 -0.1 874,825 + AMB_RS04175 0.51 +0.1 874,825 + AMB_RS04175 0.51 -1.1 874,825 + AMB_RS04175 0.51 -1.1 874,826 - AMB_RS04175 0.51 -1.1 874,826 - AMB_RS04175 0.51 -0.1 874,826 - AMB_RS04175 0.51 -0.7 874,831 + AMB_RS04175 0.51 -1.0 874,831 + AMB_RS04175 0.51 -0.5 874,831 + AMB_RS04175 0.51 -0.1 874,831 + AMB_RS04175 0.51 -0.2 874,831 + AMB_RS04175 0.51 -0.3 874,832 - AMB_RS04175 0.51 -0.4 874,832 - AMB_RS04175 0.51 -0.5 874,832 - AMB_RS04175 0.51 -0.1 874,832 - AMB_RS04175 0.51 +0.5 874,832 - AMB_RS04175 0.51 -0.5 874,832 - AMB_RS04175 0.51 -0.8 874,849 + AMB_RS04175 0.53 -1.0 875,087 - AMB_RS04175 0.78 +1.3 875,087 - AMB_RS04175 0.78 -0.4 875,087 - AMB_RS04175 0.78 -0.7 875,087 - AMB_RS04175 0.78 -1.3 875,087 - AMB_RS04175 0.78 -0.3 875,251 + -0.4 875,251 + -0.7 875,251 + +0.3 875,251 + -0.5 875,251 + -0.5 875,251 + -0.5 875,252 - -0.9 875,252 - +0.1 875,252 - -0.4 875,252 - -0.1 875,330 - -0.2 875,470 + AMB_RS04180 0.12 -1.1 875,471 - AMB_RS04180 0.12 -1.5 875,471 - AMB_RS04180 0.12 +0.3 875,526 + AMB_RS04180 0.15 -0.5 875,526 + AMB_RS04180 0.15 -0.7 875,526 + AMB_RS04180 0.15 -3.7 875,526 + AMB_RS04180 0.15 -1.1 875,526 + AMB_RS04180 0.15 +0.8 875,526 + AMB_RS04180 0.15 +0.5 875,526 + AMB_RS04180 0.15 -2.5 875,527 - AMB_RS04180 0.15 -0.7 875,527 - AMB_RS04180 0.15 -0.3 875,527 - AMB_RS04180 0.15 -2.7 875,527 - AMB_RS04180 0.15 -0.5 875,608 - AMB_RS04180 0.21 +0.1 875,664 + AMB_RS04180 0.25 -0.2 875,664 + AMB_RS04180 0.25 +0.1 875,664 + AMB_RS04180 0.25 -0.4 875,664 + AMB_RS04180 0.25 -1.1 875,664 + AMB_RS04180 0.25 +0.4 875,664 + AMB_RS04180 0.25 -1.2 875,665 - AMB_RS04180 0.25 -1.4 875,665 - AMB_RS04180 0.25 -0.4 875,665 - AMB_RS04180 0.25 +0.1 875,665 - AMB_RS04180 0.25 -0.9 875,665 - AMB_RS04180 0.25 -0.8 875,733 + AMB_RS04180 0.29 -0.9 875,733 + AMB_RS04180 0.29 -0.9 875,733 + AMB_RS04180 0.29 -0.8 875,734 - AMB_RS04180 0.29 -1.7 875,736 + AMB_RS04180 0.30 +1.6 875,736 + AMB_RS04180 0.30 -0.5 875,736 + AMB_RS04180 0.30 -0.5 875,737 - AMB_RS04180 0.30 -1.5 875,737 - AMB_RS04180 0.30 -1.2 875,737 - AMB_RS04180 0.30 +0.2 875,757 + AMB_RS04180 0.31 -0.4 875,757 + AMB_RS04180 0.31 -0.9 875,757 + AMB_RS04180 0.31 -1.1 875,757 + AMB_RS04180 0.31 +0.2 875,757 + AMB_RS04180 0.31 +0.4 875,757 + AMB_RS04180 0.31 -1.7 875,757 + AMB_RS04180 0.31 +0.8 875,757 + AMB_RS04180 0.31 -0.3 875,757 + AMB_RS04180 0.31 -2.2 875,758 - AMB_RS04180 0.31 -0.5 875,758 - AMB_RS04180 0.31 -0.5 875,758 - AMB_RS04180 0.31 -0.1 875,758 - AMB_RS04180 0.31 -1.1 875,758 - AMB_RS04180 0.31 -0.4 875,758 - AMB_RS04180 0.31 -0.2 875,758 - AMB_RS04180 0.31 -0.7 875,758 - AMB_RS04180 0.31 -0.4 875,758 - AMB_RS04180 0.31 -1.9 875,763 + AMB_RS04180 0.31 -0.3 875,763 + AMB_RS04180 0.31 -0.7 875,763 + AMB_RS04180 0.31 -0.5 875,763 + AMB_RS04180 0.31 -1.4 875,763 + AMB_RS04180 0.31 +0.8 875,763 + AMB_RS04180 0.31 -0.9 875,764 - AMB_RS04180 0.31 -0.6 875,913 + AMB_RS04180 0.42 -0.0 875,913 + AMB_RS04180 0.42 -0.7 875,913 + AMB_RS04180 0.42 -0.4 875,913 + AMB_RS04180 0.42 -0.6 875,913 + AMB_RS04180 0.42 -0.4 875,913 + AMB_RS04180 0.42 -0.6 875,913 + AMB_RS04180 0.42 +0.9 875,914 - AMB_RS04180 0.42 -1.4 875,914 - AMB_RS04180 0.42 -0.2 875,914 - AMB_RS04180 0.42 -0.1 875,914 - AMB_RS04180 0.42 -0.2 875,914 - AMB_RS04180 0.42 -1.4 875,955 + AMB_RS04180 0.44 -0.5 875,955 + AMB_RS04180 0.44 -2.5 875,955 + AMB_RS04180 0.44 -1.3 875,955 + AMB_RS04180 0.44 -0.5 875,955 + AMB_RS04180 0.44 -0.2 875,956 - AMB_RS04180 0.44 +0.1 875,956 - AMB_RS04180 0.44 -0.4 875,956 - AMB_RS04180 0.44 -0.5 876,051 + AMB_RS04180 0.51 +0.3 876,051 + AMB_RS04180 0.51 -0.2 876,052 - AMB_RS04180 0.51 -0.2 876,052 - AMB_RS04180 0.51 +0.5 876,052 - AMB_RS04180 0.51 -0.4 876,052 - AMB_RS04180 0.51 +0.2 876,138 + AMB_RS04180 0.57 +0.0 876,138 + AMB_RS04180 0.57 -0.5 876,138 + AMB_RS04180 0.57 -0.4 876,219 + AMB_RS04180 0.62 -0.5 876,219 + AMB_RS04180 0.62 -0.2 876,219 + AMB_RS04180 0.62 +0.0 876,219 + AMB_RS04180 0.62 -0.0 876,220 - AMB_RS04180 0.62 -1.1 876,220 - AMB_RS04180 0.62 +1.2 876,220 - AMB_RS04180 0.62 -0.3 876,220 - AMB_RS04180 0.62 +0.1 876,220 - AMB_RS04180 0.62 -0.8 876,312 + AMB_RS04180 0.69 -3.0 876,312 + AMB_RS04180 0.69 +0.3 876,312 + AMB_RS04180 0.69 -0.4 876,312 + AMB_RS04180 0.69 -1.4 876,313 - AMB_RS04180 0.69 +0.5 876,313 - AMB_RS04180 0.69 +0.1 876,420 + AMB_RS04180 0.76 -1.0 876,420 + AMB_RS04180 0.76 -0.8 876,421 - AMB_RS04180 0.76 -0.6 876,558 + AMB_RS04180 0.85 -0.7 876,559 - AMB_RS04180 0.85 -1.3 876,559 - AMB_RS04180 0.85 -0.3 876,559 - AMB_RS04180 0.85 -0.9 876,578 + AMB_RS04180 0.87 -0.5 876,578 + AMB_RS04180 0.87 -0.7 876,579 - AMB_RS04180 0.87 +1.1 876,579 - AMB_RS04180 0.87 -0.5 876,579 - AMB_RS04180 0.87 -0.7 876,726 + -0.6 876,726 + -0.5 876,775 + +0.9 876,775 + -1.2 876,776 - -0.8 876,807 - -0.6 876,914 + -0.2 876,914 + +0.1 876,919 + -1.3 876,985 + -1.4 876,995 + -0.3 876,996 - -2.0 876,997 + -1.9 876,997 + -0.9 877,079 + -0.8 877,079 + +1.0 877,274 + -1.1 877,347 - AMB_RS04185 0.12 -2.1 877,434 - AMB_RS04185 0.14 -2.1 877,434 - AMB_RS04185 0.14 -1.4 877,665 - AMB_RS04185 0.21 -0.6 877,729 + AMB_RS04185 0.23 -0.5 877,729 + AMB_RS04185 0.23 +0.7 877,730 - AMB_RS04185 0.23 -0.3 877,771 + AMB_RS04185 0.24 -0.3
Or see this region's nucleotide sequence