Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03315

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03310 and AMB_RS03315 are separated by 15 nucleotidesAMB_RS03315 and AMB_RS03320 are separated by 437 nucleotides AMB_RS03310: AMB_RS03310 - hypothetical protein, at 692,731 to 694,056 _RS03310 AMB_RS03315: AMB_RS03315 - hypothetical protein, at 694,072 to 694,356 _RS03315 AMB_RS03320: AMB_RS03320 - hypothetical protein, at 694,794 to 695,342 _RS03320 Position (kb) 694 695Strain fitness (log2 ratio) -2 -1 0 1 2at 693.117 kb on + strand, within AMB_RS03310at 693.117 kb on + strand, within AMB_RS03310at 693.118 kb on - strand, within AMB_RS03310at 693.120 kb on + strand, within AMB_RS03310at 693.121 kb on - strand, within AMB_RS03310at 693.131 kb on - strand, within AMB_RS03310at 693.134 kb on - strand, within AMB_RS03310at 693.276 kb on + strand, within AMB_RS03310at 693.276 kb on + strand, within AMB_RS03310at 693.276 kb on + strand, within AMB_RS03310at 693.277 kb on - strand, within AMB_RS03310at 693.277 kb on - strand, within AMB_RS03310at 693.404 kb on + strand, within AMB_RS03310at 693.551 kb on + strand, within AMB_RS03310at 693.551 kb on + strand, within AMB_RS03310at 693.551 kb on + strand, within AMB_RS03310at 693.554 kb on - strand, within AMB_RS03310at 693.692 kb on + strand, within AMB_RS03310at 693.693 kb on - strand, within AMB_RS03310at 693.693 kb on - strand, within AMB_RS03310at 693.693 kb on - strand, within AMB_RS03310at 693.701 kb on + strand, within AMB_RS03310at 693.701 kb on + strand, within AMB_RS03310at 693.702 kb on - strand, within AMB_RS03310at 693.702 kb on - strand, within AMB_RS03310at 693.702 kb on - strand, within AMB_RS03310at 693.774 kb on - strand, within AMB_RS03310at 693.939 kb on + strandat 693.940 kb on - strandat 693.940 kb on - strandat 693.965 kb on + strandat 694.271 kb on + strand, within AMB_RS03315at 694.271 kb on + strand, within AMB_RS03315at 694.271 kb on + strand, within AMB_RS03315at 694.429 kb on + strandat 694.432 kb on - strandat 694.512 kb on + strandat 694.597 kb on + strandat 694.634 kb on + strandat 694.635 kb on - strandat 694.654 kb on + strandat 694.666 kb on - strandat 694.741 kb on + strandat 694.742 kb on - strandat 694.742 kb on - strandat 694.806 kb on + strandat 694.806 kb on + strandat 694.806 kb on + strandat 694.807 kb on - strandat 694.807 kb on - strandat 694.822 kb on - strandat 694.822 kb on - strandat 694.835 kb on + strandat 694.836 kb on - strandat 694.878 kb on + strand, within AMB_RS03320at 694.879 kb on - strand, within AMB_RS03320at 694.908 kb on + strand, within AMB_RS03320at 694.908 kb on + strand, within AMB_RS03320at 694.908 kb on + strand, within AMB_RS03320at 694.908 kb on + strand, within AMB_RS03320at 694.908 kb on + strand, within AMB_RS03320at 694.909 kb on - strand, within AMB_RS03320at 695.019 kb on - strand, within AMB_RS03320at 695.030 kb on + strand, within AMB_RS03320at 695.070 kb on + strand, within AMB_RS03320at 695.070 kb on + strand, within AMB_RS03320at 695.070 kb on + strand, within AMB_RS03320at 695.071 kb on - strand, within AMB_RS03320at 695.071 kb on - strand, within AMB_RS03320at 695.071 kb on - strand, within AMB_RS03320at 695.105 kb on + strand, within AMB_RS03320at 695.106 kb on - strand, within AMB_RS03320at 695.218 kb on + strand, within AMB_RS03320at 695.218 kb on + strand, within AMB_RS03320at 695.218 kb on + strand, within AMB_RS03320at 695.218 kb on + strand, within AMB_RS03320at 695.218 kb on + strand, within AMB_RS03320at 695.219 kb on - strand, within AMB_RS03320at 695.219 kb on - strand, within AMB_RS03320at 695.219 kb on - strand, within AMB_RS03320at 695.232 kb on + strand, within AMB_RS03320at 695.232 kb on + strand, within AMB_RS03320at 695.233 kb on - strand, within AMB_RS03320at 695.233 kb on - strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.284 kb on - strand, within AMB_RS03320at 695.284 kb on - strand, within AMB_RS03320at 695.284 kb on - strand, within AMB_RS03320at 695.284 kb on - strand, within AMB_RS03320at 695.352 kb on + strandat 695.353 kb on - strandat 695.353 kb on - strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.356 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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693,117 + AMB_RS03310 0.29 -0.3
693,117 + AMB_RS03310 0.29 -0.4
693,118 - AMB_RS03310 0.29 -0.1
693,120 + AMB_RS03310 0.29 -0.2
693,121 - AMB_RS03310 0.29 +0.5
693,131 - AMB_RS03310 0.30 -1.5
693,134 - AMB_RS03310 0.30 -0.4
693,276 + AMB_RS03310 0.41 -0.6
693,276 + AMB_RS03310 0.41 -0.1
693,276 + AMB_RS03310 0.41 -0.0
693,277 - AMB_RS03310 0.41 -0.0
693,277 - AMB_RS03310 0.41 -0.7
693,404 + AMB_RS03310 0.51 -0.2
693,551 + AMB_RS03310 0.62 +0.5
693,551 + AMB_RS03310 0.62 -0.5
693,551 + AMB_RS03310 0.62 -1.1
693,554 - AMB_RS03310 0.62 -0.2
693,692 + AMB_RS03310 0.72 -2.3
693,693 - AMB_RS03310 0.73 -0.0
693,693 - AMB_RS03310 0.73 -0.5
693,693 - AMB_RS03310 0.73 -0.1
693,701 + AMB_RS03310 0.73 -0.2
693,701 + AMB_RS03310 0.73 -0.8
693,702 - AMB_RS03310 0.73 -1.2
693,702 - AMB_RS03310 0.73 -0.4
693,702 - AMB_RS03310 0.73 -0.7
693,774 - AMB_RS03310 0.79 +0.6
693,939 + +0.0
693,940 - +1.7
693,940 - -0.2
693,965 + -0.1
694,271 + AMB_RS03315 0.70 -0.8
694,271 + AMB_RS03315 0.70 -0.5
694,271 + AMB_RS03315 0.70 -0.7
694,429 + -1.6
694,432 - +0.0
694,512 + -0.3
694,597 + +0.2
694,634 + -0.9
694,635 - -0.8
694,654 + -1.3
694,666 - -0.4
694,741 + +0.1
694,742 - -0.1
694,742 - -0.1
694,806 + +0.3
694,806 + +0.1
694,806 + -0.3
694,807 - -0.7
694,807 - -0.5
694,822 - -0.7
694,822 - -0.9
694,835 + -0.3
694,836 - +1.5
694,878 + AMB_RS03320 0.15 -0.3
694,879 - AMB_RS03320 0.15 +0.2
694,908 + AMB_RS03320 0.21 -0.4
694,908 + AMB_RS03320 0.21 -0.4
694,908 + AMB_RS03320 0.21 -0.1
694,908 + AMB_RS03320 0.21 -1.1
694,908 + AMB_RS03320 0.21 -0.9
694,909 - AMB_RS03320 0.21 -0.5
695,019 - AMB_RS03320 0.41 -1.1
695,030 + AMB_RS03320 0.43 -0.0
695,070 + AMB_RS03320 0.50 -0.7
695,070 + AMB_RS03320 0.50 -1.1
695,070 + AMB_RS03320 0.50 -0.4
695,071 - AMB_RS03320 0.50 -0.1
695,071 - AMB_RS03320 0.50 -1.1
695,071 - AMB_RS03320 0.50 +0.5
695,105 + AMB_RS03320 0.57 -0.0
695,106 - AMB_RS03320 0.57 -0.1
695,218 + AMB_RS03320 0.77 -1.2
695,218 + AMB_RS03320 0.77 -0.4
695,218 + AMB_RS03320 0.77 +2.5
695,218 + AMB_RS03320 0.77 -0.0
695,218 + AMB_RS03320 0.77 -0.5
695,219 - AMB_RS03320 0.77 -0.9
695,219 - AMB_RS03320 0.77 +0.0
695,219 - AMB_RS03320 0.77 +0.5
695,232 + AMB_RS03320 0.80 -0.8
695,232 + AMB_RS03320 0.80 -0.2
695,233 - AMB_RS03320 0.80 +0.1
695,233 - AMB_RS03320 0.80 +0.3
695,283 + AMB_RS03320 0.89 +0.4
695,283 + AMB_RS03320 0.89 -0.3
695,283 + AMB_RS03320 0.89 +0.6
695,283 + AMB_RS03320 0.89 -0.4
695,283 + AMB_RS03320 0.89 +1.1
695,283 + AMB_RS03320 0.89 -0.6
695,283 + AMB_RS03320 0.89 -0.3
695,284 - AMB_RS03320 0.89 -0.5
695,284 - AMB_RS03320 0.89 -0.2
695,284 - AMB_RS03320 0.89 +1.1
695,284 - AMB_RS03320 0.89 +0.5
695,352 + +0.5
695,353 - +0.3
695,353 - +0.0
695,356 + -0.8
695,356 + +0.3
695,356 + -0.2
695,356 + -0.5
695,356 + -1.5
695,356 + +0.2
695,356 + -0.3

Or see this region's nucleotide sequence