Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03200

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23895 and AMB_RS03200 are separated by 317 nucleotidesAMB_RS03200 and AMB_RS03205 are separated by 197 nucleotides AMB_RS23895: AMB_RS23895 - FRG domain-containing protein, at 665,385 to 666,089 _RS23895 AMB_RS03200: AMB_RS03200 - hypothetical protein, at 666,407 to 668,098 _RS03200 AMB_RS03205: AMB_RS03205 - DNA recombination/repair protein RecA, at 668,296 to 669,375 _RS03205 Position (kb) 666 667 668 669Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 665.529 kb on - strand, within AMB_RS23895at 665.745 kb on + strand, within AMB_RS23895at 665.752 kb on + strand, within AMB_RS23895at 665.752 kb on + strand, within AMB_RS23895at 665.753 kb on - strand, within AMB_RS23895at 665.753 kb on - strand, within AMB_RS23895at 665.960 kb on + strand, within AMB_RS23895at 666.062 kb on - strandat 666.086 kb on - strandat 666.128 kb on - strandat 666.227 kb on - strandat 666.247 kb on - strandat 666.504 kb on + strandat 666.504 kb on + strandat 666.504 kb on + strandat 666.504 kb on + strandat 666.504 kb on + strandat 666.504 kb on + strandat 666.505 kb on - strandat 666.505 kb on - strandat 666.505 kb on - strandat 666.576 kb on + strandat 666.576 kb on + strandat 666.577 kb on - strand, within AMB_RS03200at 666.577 kb on - strand, within AMB_RS03200at 666.577 kb on - strand, within AMB_RS03200at 666.577 kb on - strand, within AMB_RS03200at 666.577 kb on - strand, within AMB_RS03200at 666.577 kb on - strand, within AMB_RS03200at 666.579 kb on + strand, within AMB_RS03200at 666.579 kb on + strand, within AMB_RS03200at 666.579 kb on + strand, within AMB_RS03200at 666.580 kb on - strand, within AMB_RS03200at 666.580 kb on - strand, within AMB_RS03200at 666.580 kb on - strand, within AMB_RS03200at 666.580 kb on - strand, within AMB_RS03200at 666.744 kb on + strand, within AMB_RS03200at 666.745 kb on - strand, within AMB_RS03200at 666.745 kb on - strand, within AMB_RS03200at 666.855 kb on + strand, within AMB_RS03200at 666.867 kb on + strand, within AMB_RS03200at 666.868 kb on - strand, within AMB_RS03200at 666.868 kb on - strand, within AMB_RS03200at 666.868 kb on - strand, within AMB_RS03200at 666.919 kb on - strand, within AMB_RS03200at 666.919 kb on - strand, within AMB_RS03200at 666.919 kb on - strand, within AMB_RS03200at 667.053 kb on + strand, within AMB_RS03200at 667.054 kb on - strand, within AMB_RS03200at 667.054 kb on - strand, within AMB_RS03200at 667.059 kb on + strand, within AMB_RS03200at 667.059 kb on + strand, within AMB_RS03200at 667.059 kb on + strand, within AMB_RS03200at 667.060 kb on - strand, within AMB_RS03200at 667.060 kb on - strand, within AMB_RS03200at 667.060 kb on - strand, within AMB_RS03200at 667.060 kb on - strand, within AMB_RS03200at 667.060 kb on - strand, within AMB_RS03200at 667.188 kb on + strand, within AMB_RS03200at 667.668 kb on + strand, within AMB_RS03200at 667.669 kb on - strand, within AMB_RS03200at 667.669 kb on - strand, within AMB_RS03200at 667.764 kb on + strand, within AMB_RS03200at 667.786 kb on - strand, within AMB_RS03200at 667.786 kb on - strand, within AMB_RS03200at 668.136 kb on + strandat 668.136 kb on + strandat 668.137 kb on - strandat 668.155 kb on + strandat 668.155 kb on + strandat 668.155 kb on + strandat 668.155 kb on + strandat 668.156 kb on - strandat 668.156 kb on - strandat 668.277 kb on + strandat 668.332 kb on - strandat 668.522 kb on - strand, within AMB_RS03205

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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665,529 - AMB_RS23895 0.20 -0.3
665,745 + AMB_RS23895 0.51 +0.5
665,752 + AMB_RS23895 0.52 +1.1
665,752 + AMB_RS23895 0.52 -0.4
665,753 - AMB_RS23895 0.52 -0.1
665,753 - AMB_RS23895 0.52 -0.5
665,960 + AMB_RS23895 0.82 +1.2
666,062 - -1.3
666,086 - -0.9
666,128 - -0.5
666,227 - +0.6
666,247 - -0.2
666,504 + -0.0
666,504 + -0.1
666,504 + +0.0
666,504 + -0.2
666,504 + +0.5
666,504 + -0.2
666,505 - -0.2
666,505 - +0.1
666,505 - -1.0
666,576 + -0.2
666,576 + +0.8
666,577 - AMB_RS03200 0.10 -0.4
666,577 - AMB_RS03200 0.10 +0.3
666,577 - AMB_RS03200 0.10 +0.5
666,577 - AMB_RS03200 0.10 -0.3
666,577 - AMB_RS03200 0.10 -3.1
666,577 - AMB_RS03200 0.10 -0.3
666,579 + AMB_RS03200 0.10 -0.1
666,579 + AMB_RS03200 0.10 -0.3
666,579 + AMB_RS03200 0.10 -0.9
666,580 - AMB_RS03200 0.10 -0.5
666,580 - AMB_RS03200 0.10 +0.7
666,580 - AMB_RS03200 0.10 +0.1
666,580 - AMB_RS03200 0.10 +0.1
666,744 + AMB_RS03200 0.20 +0.1
666,745 - AMB_RS03200 0.20 -1.7
666,745 - AMB_RS03200 0.20 +0.2
666,855 + AMB_RS03200 0.26 +0.3
666,867 + AMB_RS03200 0.27 -0.1
666,868 - AMB_RS03200 0.27 -2.7
666,868 - AMB_RS03200 0.27 +0.4
666,868 - AMB_RS03200 0.27 -0.7
666,919 - AMB_RS03200 0.30 -2.9
666,919 - AMB_RS03200 0.30 -0.4
666,919 - AMB_RS03200 0.30 -0.2
667,053 + AMB_RS03200 0.38 -1.4
667,054 - AMB_RS03200 0.38 -0.5
667,054 - AMB_RS03200 0.38 +1.1
667,059 + AMB_RS03200 0.39 -0.3
667,059 + AMB_RS03200 0.39 -0.2
667,059 + AMB_RS03200 0.39 +0.1
667,060 - AMB_RS03200 0.39 +2.5
667,060 - AMB_RS03200 0.39 -1.1
667,060 - AMB_RS03200 0.39 +0.1
667,060 - AMB_RS03200 0.39 -1.9
667,060 - AMB_RS03200 0.39 -0.9
667,188 + AMB_RS03200 0.46 -1.2
667,668 + AMB_RS03200 0.75 +0.0
667,669 - AMB_RS03200 0.75 -0.5
667,669 - AMB_RS03200 0.75 +0.4
667,764 + AMB_RS03200 0.80 -0.3
667,786 - AMB_RS03200 0.82 +0.5
667,786 - AMB_RS03200 0.82 -0.8
668,136 + -1.5
668,136 + -0.8
668,137 - +0.5
668,155 + -0.1
668,155 + -0.2
668,155 + +0.3
668,155 + -0.6
668,156 - +0.1
668,156 - -0.2
668,277 + +0.2
668,332 - -2.1
668,522 - AMB_RS03205 0.21 -2.6

Or see this region's nucleotide sequence