Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02545

Experiment: without_iron2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS02540 and AMB_RS02545 are separated by 104 nucleotidesAMB_RS02545 and AMB_RS02550 are separated by 94 nucleotides AMB_RS02540: AMB_RS02540 - two-component system response regulator, at 525,188 to 526,174 _RS02540 AMB_RS02545: AMB_RS02545 - hypothetical protein, at 526,279 to 527,778 _RS02545 AMB_RS02550: AMB_RS02550 - DNA polymerase III, at 527,873 to 529,633 _RS02550 Position (kb) 526 527 528Strain fitness (log2 ratio) -2 -1 0 1at 525.597 kb on + strand, within AMB_RS02540at 525.597 kb on + strand, within AMB_RS02540at 525.598 kb on - strand, within AMB_RS02540at 525.598 kb on - strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.860 kb on + strand, within AMB_RS02540at 525.861 kb on - strand, within AMB_RS02540at 526.100 kb on + strandat 526.101 kb on - strandat 526.101 kb on - strandat 526.101 kb on - strandat 526.172 kb on + strandat 526.173 kb on - strandat 526.346 kb on + strandat 526.346 kb on + strandat 526.347 kb on - strandat 526.347 kb on - strandat 526.400 kb on + strandat 526.400 kb on + strandat 526.400 kb on + strandat 526.400 kb on + strandat 526.400 kb on + strandat 526.400 kb on + strandat 526.401 kb on - strandat 526.473 kb on - strand, within AMB_RS02545at 526.502 kb on + strand, within AMB_RS02545at 526.502 kb on + strand, within AMB_RS02545at 526.503 kb on - strand, within AMB_RS02545at 526.503 kb on - strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.538 kb on + strand, within AMB_RS02545at 526.539 kb on - strand, within AMB_RS02545at 526.539 kb on - strand, within AMB_RS02545at 526.539 kb on - strand, within AMB_RS02545at 526.539 kb on - strand, within AMB_RS02545at 526.539 kb on - strand, within AMB_RS02545at 526.553 kb on + strand, within AMB_RS02545at 526.553 kb on + strand, within AMB_RS02545at 526.553 kb on + strand, within AMB_RS02545at 526.553 kb on + strand, within AMB_RS02545at 526.554 kb on - strand, within AMB_RS02545at 526.554 kb on - strand, within AMB_RS02545at 526.554 kb on - strand, within AMB_RS02545at 526.554 kb on - strand, within AMB_RS02545at 526.588 kb on + strand, within AMB_RS02545at 526.588 kb on + strand, within AMB_RS02545at 526.588 kb on + strand, within AMB_RS02545at 526.739 kb on + strand, within AMB_RS02545at 526.739 kb on + strand, within AMB_RS02545at 526.740 kb on - strand, within AMB_RS02545at 526.740 kb on - strand, within AMB_RS02545at 527.459 kb on + strand, within AMB_RS02545at 527.459 kb on + strand, within AMB_RS02545at 527.460 kb on - strand, within AMB_RS02545at 527.460 kb on - strand, within AMB_RS02545at 527.460 kb on - strand, within AMB_RS02545at 527.460 kb on - strand, within AMB_RS02545at 527.460 kb on - strand, within AMB_RS02545at 527.468 kb on + strand, within AMB_RS02545at 527.468 kb on + strand, within AMB_RS02545at 527.468 kb on + strand, within AMB_RS02545at 527.468 kb on + strand, within AMB_RS02545at 527.570 kb on + strand, within AMB_RS02545at 527.744 kb on + strandat 527.744 kb on + strandat 527.744 kb on + strandat 527.745 kb on - strandat 527.745 kb on - strandat 527.747 kb on + strandat 527.834 kb on + strandat 527.877 kb on - strandat 527.877 kb on - strandat 527.877 kb on - strandat 527.877 kb on - strandat 527.877 kb on - strandat 528.187 kb on - strand, within AMB_RS02550at 528.187 kb on - strand, within AMB_RS02550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
remove
525,597 + AMB_RS02540 0.41 +0.0
525,597 + AMB_RS02540 0.41 -0.7
525,598 - AMB_RS02540 0.42 -0.4
525,598 - AMB_RS02540 0.42 +0.6
525,860 + AMB_RS02540 0.68 +0.1
525,860 + AMB_RS02540 0.68 -0.3
525,860 + AMB_RS02540 0.68 +0.5
525,860 + AMB_RS02540 0.68 +0.3
525,860 + AMB_RS02540 0.68 +0.3
525,860 + AMB_RS02540 0.68 +0.7
525,860 + AMB_RS02540 0.68 -0.7
525,861 - AMB_RS02540 0.68 -0.3
526,100 + -1.5
526,101 - -1.9
526,101 - -0.2
526,101 - -1.1
526,172 + +0.2
526,173 - +0.1
526,346 + -0.0
526,346 + -0.1
526,347 - -0.3
526,347 - -0.1
526,400 + -0.1
526,400 + +1.5
526,400 + -0.0
526,400 + +0.2
526,400 + -0.4
526,400 + -1.4
526,401 - +0.3
526,473 - AMB_RS02545 0.13 +0.1
526,502 + AMB_RS02545 0.15 -0.2
526,502 + AMB_RS02545 0.15 -0.0
526,503 - AMB_RS02545 0.15 -0.3
526,503 - AMB_RS02545 0.15 -0.5
526,538 + AMB_RS02545 0.17 -0.9
526,538 + AMB_RS02545 0.17 +0.1
526,538 + AMB_RS02545 0.17 -1.1
526,538 + AMB_RS02545 0.17 -0.1
526,538 + AMB_RS02545 0.17 -0.1
526,538 + AMB_RS02545 0.17 +0.7
526,539 - AMB_RS02545 0.17 +0.1
526,539 - AMB_RS02545 0.17 -0.1
526,539 - AMB_RS02545 0.17 +0.1
526,539 - AMB_RS02545 0.17 -0.8
526,539 - AMB_RS02545 0.17 -0.2
526,553 + AMB_RS02545 0.18 -0.2
526,553 + AMB_RS02545 0.18 -0.1
526,553 + AMB_RS02545 0.18 +1.1
526,553 + AMB_RS02545 0.18 +0.2
526,554 - AMB_RS02545 0.18 -1.3
526,554 - AMB_RS02545 0.18 -0.2
526,554 - AMB_RS02545 0.18 +0.1
526,554 - AMB_RS02545 0.18 -0.7
526,588 + AMB_RS02545 0.21 +0.0
526,588 + AMB_RS02545 0.21 -0.1
526,588 + AMB_RS02545 0.21 -0.4
526,739 + AMB_RS02545 0.31 -0.8
526,739 + AMB_RS02545 0.31 -0.2
526,740 - AMB_RS02545 0.31 +0.2
526,740 - AMB_RS02545 0.31 -0.8
527,459 + AMB_RS02545 0.79 -1.1
527,459 + AMB_RS02545 0.79 +0.7
527,460 - AMB_RS02545 0.79 +0.2
527,460 - AMB_RS02545 0.79 -2.0
527,460 - AMB_RS02545 0.79 -0.1
527,460 - AMB_RS02545 0.79 -1.0
527,460 - AMB_RS02545 0.79 -0.2
527,468 + AMB_RS02545 0.79 -0.2
527,468 + AMB_RS02545 0.79 -0.3
527,468 + AMB_RS02545 0.79 -0.6
527,468 + AMB_RS02545 0.79 +0.3
527,570 + AMB_RS02545 0.86 -0.2
527,744 + -0.1
527,744 + -1.0
527,744 + +0.5
527,745 - -0.2
527,745 - -1.4
527,747 + -0.3
527,834 + +0.3
527,877 - -0.2
527,877 - +0.1
527,877 - -0.5
527,877 - -0.6
527,877 - +1.0
528,187 - AMB_RS02550 0.18 -0.2
528,187 - AMB_RS02550 0.18 -0.1

Or see this region's nucleotide sequence