Experiment: without_iron2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01660 and AMB_RS01665 overlap by 4 nucleotides AMB_RS01665 and AMB_RS01670 are separated by 4 nucleotides AMB_RS01670 and AMB_RS01675 overlap by 4 nucleotides AMB_RS01675 and AMB_RS01680 overlap by 1 nucleotides
AMB_RS01660: AMB_RS01660 - class I SAM-dependent RNA methyltransferase, at 367,407 to 368,723
_RS01660
AMB_RS01665: AMB_RS01665 - ABC transporter, at 368,720 to 369,313
_RS01665
AMB_RS01670: AMB_RS01670 - MCE family protein, at 369,318 to 370,280
_RS01670
AMB_RS01675: AMB_RS01675 - ABC transporter ATP-binding protein, at 370,277 to 371,104
_RS01675
AMB_RS01680: AMB_RS01680 - ABC transporter permease, at 371,104 to 371,919
_RS01680
Position (kb) 369
370
371 Strain fitness (log2 ratio) -1
0
1 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.839 kb on - strand, within AMB_RS01665 at 368.839 kb on - strand, within AMB_RS01665 at 368.839 kb on - strand, within AMB_RS01665 at 368.839 kb on - strand, within AMB_RS01665 at 369.021 kb on + strand, within AMB_RS01665 at 369.021 kb on + strand, within AMB_RS01665 at 369.022 kb on - strand, within AMB_RS01665 at 369.075 kb on + strand, within AMB_RS01665 at 369.076 kb on - strand, within AMB_RS01665 at 369.076 kb on - strand, within AMB_RS01665 at 369.076 kb on - strand, within AMB_RS01665 at 369.076 kb on - strand, within AMB_RS01665 at 369.076 kb on - strand, within AMB_RS01665 at 369.081 kb on + strand, within AMB_RS01665 at 369.081 kb on + strand, within AMB_RS01665 at 369.081 kb on + strand, within AMB_RS01665 at 369.081 kb on + strand, within AMB_RS01665 at 369.081 kb on + strand, within AMB_RS01665 at 369.082 kb on - strand, within AMB_RS01665 at 369.082 kb on - strand, within AMB_RS01665 at 369.082 kb on - strand, within AMB_RS01665 at 369.082 kb on - strand, within AMB_RS01665 at 369.218 kb on + strand, within AMB_RS01665 at 369.228 kb on + strand, within AMB_RS01665 at 369.229 kb on - strand, within AMB_RS01665 at 369.296 kb on + strand at 369.319 kb on + strand at 369.320 kb on - strand at 369.431 kb on + strand, within AMB_RS01670 at 369.431 kb on + strand, within AMB_RS01670 at 369.431 kb on + strand, within AMB_RS01670 at 369.432 kb on - strand, within AMB_RS01670 at 369.432 kb on - strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.935 kb on + strand, within AMB_RS01670 at 369.935 kb on + strand, within AMB_RS01670 at 370.129 kb on + strand, within AMB_RS01670 at 370.129 kb on + strand, within AMB_RS01670 at 370.130 kb on - strand, within AMB_RS01670 at 370.162 kb on + strand, within AMB_RS01670 at 370.162 kb on + strand, within AMB_RS01670 at 370.162 kb on + strand, within AMB_RS01670 at 370.163 kb on - strand, within AMB_RS01670 at 370.163 kb on - strand, within AMB_RS01670 at 370.163 kb on - strand, within AMB_RS01670 at 370.163 kb on - strand, within AMB_RS01670 at 370.163 kb on - strand, within AMB_RS01670 at 370.165 kb on + strand, within AMB_RS01670 at 370.165 kb on + strand, within AMB_RS01670 at 370.165 kb on + strand, within AMB_RS01670 at 370.165 kb on + strand, within AMB_RS01670 at 370.165 kb on + strand, within AMB_RS01670 at 370.166 kb on - strand, within AMB_RS01670 at 370.166 kb on - strand, within AMB_RS01670 at 370.166 kb on - strand, within AMB_RS01670 at 370.166 kb on - strand, within AMB_RS01670 at 370.259 kb on - strand at 370.259 kb on - strand at 370.259 kb on - strand at 370.259 kb on - strand at 370.336 kb on - strand at 370.336 kb on - strand at 370.768 kb on + strand, within AMB_RS01675 at 370.769 kb on - strand, within AMB_RS01675
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron2 remove 368,838 + AMB_RS01665 0.20 -0.4 368,838 + AMB_RS01665 0.20 +0.7 368,838 + AMB_RS01665 0.20 +0.1 368,838 + AMB_RS01665 0.20 -0.0 368,838 + AMB_RS01665 0.20 -0.4 368,838 + AMB_RS01665 0.20 -0.3 368,838 + AMB_RS01665 0.20 -0.2 368,839 - AMB_RS01665 0.20 -0.1 368,839 - AMB_RS01665 0.20 -0.5 368,839 - AMB_RS01665 0.20 -0.7 368,839 - AMB_RS01665 0.20 -0.3 369,021 + AMB_RS01665 0.51 -0.6 369,021 + AMB_RS01665 0.51 -0.6 369,022 - AMB_RS01665 0.51 +0.1 369,075 + AMB_RS01665 0.60 +0.2 369,076 - AMB_RS01665 0.60 -0.1 369,076 - AMB_RS01665 0.60 -0.3 369,076 - AMB_RS01665 0.60 -1.6 369,076 - AMB_RS01665 0.60 -0.3 369,076 - AMB_RS01665 0.60 -0.3 369,081 + AMB_RS01665 0.61 +0.6 369,081 + AMB_RS01665 0.61 -0.3 369,081 + AMB_RS01665 0.61 -0.2 369,081 + AMB_RS01665 0.61 -0.3 369,081 + AMB_RS01665 0.61 +0.8 369,082 - AMB_RS01665 0.61 +0.3 369,082 - AMB_RS01665 0.61 +1.1 369,082 - AMB_RS01665 0.61 +0.4 369,082 - AMB_RS01665 0.61 +1.7 369,218 + AMB_RS01665 0.84 -1.1 369,228 + AMB_RS01665 0.86 -0.4 369,229 - AMB_RS01665 0.86 +0.2 369,296 + +0.1 369,319 + +0.3 369,320 - -0.2 369,431 + AMB_RS01670 0.12 -0.4 369,431 + AMB_RS01670 0.12 -0.1 369,431 + AMB_RS01670 0.12 -0.8 369,432 - AMB_RS01670 0.12 +1.3 369,432 - AMB_RS01670 0.12 +0.7 369,433 + AMB_RS01670 0.12 +1.1 369,433 + AMB_RS01670 0.12 +1.4 369,433 + AMB_RS01670 0.12 +1.1 369,433 + AMB_RS01670 0.12 -0.8 369,433 + AMB_RS01670 0.12 -0.8 369,433 + AMB_RS01670 0.12 -0.5 369,433 + AMB_RS01670 0.12 -0.7 369,433 + AMB_RS01670 0.12 -0.4 369,433 + AMB_RS01670 0.12 -0.0 369,433 + AMB_RS01670 0.12 -0.5 369,434 - AMB_RS01670 0.12 -0.7 369,434 - AMB_RS01670 0.12 -0.0 369,434 - AMB_RS01670 0.12 -0.2 369,434 - AMB_RS01670 0.12 -0.3 369,434 - AMB_RS01670 0.12 -0.3 369,434 - AMB_RS01670 0.12 +0.1 369,935 + AMB_RS01670 0.64 -0.8 369,935 + AMB_RS01670 0.64 -1.4 370,129 + AMB_RS01670 0.84 -0.8 370,129 + AMB_RS01670 0.84 -0.1 370,130 - AMB_RS01670 0.84 +0.1 370,162 + AMB_RS01670 0.88 -0.5 370,162 + AMB_RS01670 0.88 -0.4 370,162 + AMB_RS01670 0.88 +0.1 370,163 - AMB_RS01670 0.88 -1.3 370,163 - AMB_RS01670 0.88 +0.0 370,163 - AMB_RS01670 0.88 -0.1 370,163 - AMB_RS01670 0.88 +0.5 370,163 - AMB_RS01670 0.88 +0.3 370,165 + AMB_RS01670 0.88 -0.2 370,165 + AMB_RS01670 0.88 +0.5 370,165 + AMB_RS01670 0.88 +0.5 370,165 + AMB_RS01670 0.88 -0.3 370,165 + AMB_RS01670 0.88 -0.5 370,166 - AMB_RS01670 0.88 -0.7 370,166 - AMB_RS01670 0.88 -0.8 370,166 - AMB_RS01670 0.88 -0.5 370,166 - AMB_RS01670 0.88 +0.5 370,259 - -0.0 370,259 - -0.0 370,259 - +0.5 370,259 - -0.2 370,336 - -0.1 370,336 - +0.1 370,768 + AMB_RS01675 0.59 -0.7 370,769 - AMB_RS01675 0.59 +0.0
Or see this region's nucleotide sequence