Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01355

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01350 and AMB_RS01355 are separated by 221 nucleotidesAMB_RS01355 and AMB_RS01360 are separated by 10 nucleotidesAMB_RS01360 and AMB_RS01365 are separated by 102 nucleotides AMB_RS01345: AMB_RS01345 - glycosyltransferase family 1 protein, at 297,090 to 298,133 _RS01345 AMB_RS01350: AMB_RS01350 - UDP-2,3-diacylglucosamine diphosphatase, at 298,061 to 298,897 _RS01350 AMB_RS01355: AMB_RS01355 - sphingosine kinase, at 299,119 to 300,000 _RS01355 AMB_RS01360: AMB_RS01360 - hypothetical protein, at 300,011 to 300,376 _RS01360 AMB_RS01365: AMB_RS01365 - nitroreductase, at 300,479 to 302,077 _RS01365 Position (kb) 299 300 301Strain fitness (log2 ratio) -2 -1 0 1 2at 298.125 kb on + strandat 298.125 kb on + strandat 298.125 kb on + strandat 298.125 kb on + strandat 298.125 kb on + strandat 298.233 kb on + strand, within AMB_RS01350at 298.234 kb on - strand, within AMB_RS01350at 298.234 kb on - strand, within AMB_RS01350at 298.347 kb on + strand, within AMB_RS01350at 298.347 kb on + strand, within AMB_RS01350at 298.347 kb on + strand, within AMB_RS01350at 298.347 kb on + strand, within AMB_RS01350at 298.348 kb on - strand, within AMB_RS01350at 298.348 kb on - strand, within AMB_RS01350at 298.348 kb on - strand, within AMB_RS01350at 298.348 kb on - strand, within AMB_RS01350at 298.348 kb on - strand, within AMB_RS01350at 298.461 kb on + strand, within AMB_RS01350at 298.461 kb on + strand, within AMB_RS01350at 298.461 kb on + strand, within AMB_RS01350at 298.461 kb on + strand, within AMB_RS01350at 298.462 kb on - strand, within AMB_RS01350at 298.462 kb on - strand, within AMB_RS01350at 298.497 kb on + strand, within AMB_RS01350at 298.497 kb on + strand, within AMB_RS01350at 298.768 kb on - strand, within AMB_RS01350at 298.768 kb on - strand, within AMB_RS01350at 298.768 kb on - strand, within AMB_RS01350at 298.940 kb on - strandat 299.035 kb on - strandat 299.057 kb on - strandat 299.605 kb on + strand, within AMB_RS01355at 299.606 kb on - strand, within AMB_RS01355at 299.606 kb on - strand, within AMB_RS01355at 299.606 kb on - strand, within AMB_RS01355at 299.681 kb on - strand, within AMB_RS01355at 299.719 kb on + strand, within AMB_RS01355at 299.719 kb on + strand, within AMB_RS01355at 299.719 kb on + strand, within AMB_RS01355at 299.960 kb on + strandat 299.960 kb on + strandat 299.960 kb on + strandat 299.960 kb on + strandat 299.961 kb on - strandat 299.961 kb on - strandat 299.961 kb on - strandat 300.012 kb on + strandat 300.013 kb on - strandat 300.013 kb on - strandat 300.282 kb on + strand, within AMB_RS01360at 300.282 kb on + strand, within AMB_RS01360at 300.282 kb on + strand, within AMB_RS01360at 300.282 kb on + strand, within AMB_RS01360at 300.283 kb on - strand, within AMB_RS01360at 300.283 kb on - strand, within AMB_RS01360at 300.283 kb on - strand, within AMB_RS01360at 300.405 kb on + strandat 300.405 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.426 kb on + strandat 300.427 kb on - strandat 300.427 kb on - strandat 300.427 kb on - strandat 300.428 kb on + strandat 300.428 kb on + strandat 300.428 kb on + strandat 300.428 kb on + strandat 300.428 kb on + strandat 300.428 kb on + strandat 300.428 kb on + strandat 300.429 kb on - strandat 300.429 kb on - strandat 300.429 kb on - strandat 300.429 kb on - strandat 300.429 kb on - strandat 300.429 kb on - strandat 300.478 kb on + strandat 300.478 kb on + strandat 300.478 kb on + strandat 300.479 kb on - strandat 300.542 kb on + strandat 300.866 kb on + strand, within AMB_RS01365at 300.867 kb on - strand, within AMB_RS01365at 300.867 kb on - strand, within AMB_RS01365at 300.867 kb on - strand, within AMB_RS01365at 300.872 kb on + strand, within AMB_RS01365at 300.872 kb on + strand, within AMB_RS01365at 300.873 kb on - strand, within AMB_RS01365at 300.992 kb on + strand, within AMB_RS01365at 300.992 kb on + strand, within AMB_RS01365at 300.992 kb on + strand, within AMB_RS01365at 300.992 kb on + strand, within AMB_RS01365at 300.993 kb on - strand, within AMB_RS01365

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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298,125 + -0.0
298,125 + -0.1
298,125 + -1.2
298,125 + -0.2
298,125 + -0.9
298,233 + AMB_RS01350 0.21 -0.1
298,234 - AMB_RS01350 0.21 -0.1
298,234 - AMB_RS01350 0.21 -1.1
298,347 + AMB_RS01350 0.34 -0.6
298,347 + AMB_RS01350 0.34 +2.5
298,347 + AMB_RS01350 0.34 +0.6
298,347 + AMB_RS01350 0.34 -0.8
298,348 - AMB_RS01350 0.34 +0.1
298,348 - AMB_RS01350 0.34 -1.2
298,348 - AMB_RS01350 0.34 -0.1
298,348 - AMB_RS01350 0.34 -0.2
298,348 - AMB_RS01350 0.34 -0.5
298,461 + AMB_RS01350 0.48 +0.7
298,461 + AMB_RS01350 0.48 +0.1
298,461 + AMB_RS01350 0.48 -0.5
298,461 + AMB_RS01350 0.48 -1.1
298,462 - AMB_RS01350 0.48 +0.0
298,462 - AMB_RS01350 0.48 -0.8
298,497 + AMB_RS01350 0.52 -0.5
298,497 + AMB_RS01350 0.52 +0.2
298,768 - AMB_RS01350 0.84 -0.3
298,768 - AMB_RS01350 0.84 -1.0
298,768 - AMB_RS01350 0.84 -0.7
298,940 - -0.1
299,035 - +0.2
299,057 - -0.3
299,605 + AMB_RS01355 0.55 -0.0
299,606 - AMB_RS01355 0.55 +0.1
299,606 - AMB_RS01355 0.55 -0.0
299,606 - AMB_RS01355 0.55 +1.2
299,681 - AMB_RS01355 0.64 -0.0
299,719 + AMB_RS01355 0.68 +1.1
299,719 + AMB_RS01355 0.68 -2.3
299,719 + AMB_RS01355 0.68 +0.3
299,960 + +0.3
299,960 + +0.8
299,960 + -2.1
299,960 + -1.2
299,961 - +0.2
299,961 - -0.7
299,961 - +1.8
300,012 + -0.2
300,013 - -1.5
300,013 - +0.4
300,282 + AMB_RS01360 0.74 -0.3
300,282 + AMB_RS01360 0.74 -0.7
300,282 + AMB_RS01360 0.74 +2.1
300,282 + AMB_RS01360 0.74 -0.3
300,283 - AMB_RS01360 0.74 -2.1
300,283 - AMB_RS01360 0.74 -0.0
300,283 - AMB_RS01360 0.74 -0.3
300,405 + +0.5
300,405 + +0.9
300,426 + -0.4
300,426 + -0.6
300,426 + -0.3
300,426 + +0.6
300,426 + -0.3
300,426 + -2.1
300,426 + -0.3
300,426 + -0.2
300,426 + +0.2
300,426 + -0.4
300,426 + -2.5
300,426 + -0.2
300,426 + +0.5
300,427 - +0.5
300,427 - +0.8
300,427 - -0.1
300,428 + -0.9
300,428 + +1.2
300,428 + -0.5
300,428 + +0.2
300,428 + -0.3
300,428 + -0.0
300,428 + -0.1
300,429 - +0.1
300,429 - +0.0
300,429 - +0.0
300,429 - -0.6
300,429 - -0.0
300,429 - -0.1
300,478 + -0.0
300,478 + -0.1
300,478 + -0.3
300,479 - -0.6
300,542 + -0.9
300,866 + AMB_RS01365 0.24 -0.5
300,867 - AMB_RS01365 0.24 -1.1
300,867 - AMB_RS01365 0.24 -0.1
300,867 - AMB_RS01365 0.24 +0.9
300,872 + AMB_RS01365 0.25 -0.7
300,872 + AMB_RS01365 0.25 -1.5
300,873 - AMB_RS01365 0.25 +0.0
300,992 + AMB_RS01365 0.32 +0.5
300,992 + AMB_RS01365 0.32 -0.4
300,992 + AMB_RS01365 0.32 -0.2
300,992 + AMB_RS01365 0.32 +0.1
300,993 - AMB_RS01365 0.32 -0.2

Or see this region's nucleotide sequence