Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01035

Experiment: without_iron2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01025 and AMB_RS01030 are separated by 28 nucleotidesAMB_RS01030 and AMB_RS01035 are separated by 232 nucleotidesAMB_RS01035 and AMB_RS01040 are separated by 171 nucleotidesAMB_RS01040 and AMB_RS01045 are separated by 124 nucleotides AMB_RS01025: AMB_RS01025 - molecular chaperone GroEL, at 227,557 to 229,215 _RS01025 AMB_RS01030: AMB_RS01030 - co-chaperone GroES, at 229,244 to 229,531 _RS01030 AMB_RS01035: AMB_RS01035 - DUF2076 domain-containing protein, at 229,764 to 230,453 _RS01035 AMB_RS01040: AMB_RS01040 - DUF1178 domain-containing protein, at 230,625 to 230,867 _RS01040 AMB_RS01045: AMB_RS01045 - NADH-quinone oxidoreductase subunit NuoB, at 230,992 to 231,528 _RS01045 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1at 229.232 kb on - strandat 229.684 kb on - strandat 229.724 kb on + strandat 229.724 kb on + strandat 229.724 kb on + strandat 229.724 kb on + strandat 229.724 kb on + strandat 229.724 kb on + strandat 229.725 kb on - strandat 229.725 kb on - strandat 229.725 kb on - strandat 229.725 kb on - strandat 229.893 kb on + strand, within AMB_RS01035at 229.893 kb on + strand, within AMB_RS01035at 229.894 kb on - strand, within AMB_RS01035at 230.097 kb on + strand, within AMB_RS01035at 230.097 kb on + strand, within AMB_RS01035at 230.097 kb on + strand, within AMB_RS01035at 230.097 kb on + strand, within AMB_RS01035at 230.097 kb on + strand, within AMB_RS01035at 230.097 kb on + strand, within AMB_RS01035at 230.097 kb on + strand, within AMB_RS01035at 230.098 kb on - strand, within AMB_RS01035at 230.098 kb on - strand, within AMB_RS01035at 230.121 kb on + strand, within AMB_RS01035at 230.122 kb on - strand, within AMB_RS01035at 230.122 kb on - strand, within AMB_RS01035at 230.122 kb on - strand, within AMB_RS01035at 230.122 kb on - strand, within AMB_RS01035at 230.122 kb on - strand, within AMB_RS01035at 230.319 kb on + strand, within AMB_RS01035at 230.319 kb on + strand, within AMB_RS01035at 230.319 kb on + strand, within AMB_RS01035at 230.319 kb on + strand, within AMB_RS01035at 230.319 kb on + strand, within AMB_RS01035at 230.319 kb on + strand, within AMB_RS01035at 230.320 kb on - strand, within AMB_RS01035at 230.320 kb on - strand, within AMB_RS01035at 230.320 kb on - strand, within AMB_RS01035at 230.320 kb on - strand, within AMB_RS01035at 230.320 kb on - strand, within AMB_RS01035at 230.320 kb on - strand, within AMB_RS01035at 230.322 kb on + strand, within AMB_RS01035at 230.322 kb on + strand, within AMB_RS01035at 230.370 kb on + strand, within AMB_RS01035at 230.451 kb on + strandat 230.451 kb on + strandat 230.452 kb on - strandat 230.471 kb on - strandat 230.471 kb on - strandat 230.487 kb on + strandat 230.488 kb on - strandat 230.497 kb on - strandat 230.556 kb on + strandat 230.556 kb on + strandat 230.557 kb on - strandat 230.588 kb on + strandat 230.588 kb on + strandat 230.588 kb on + strandat 230.589 kb on - strandat 230.589 kb on - strandat 230.590 kb on + strandat 230.634 kb on + strandat 230.634 kb on + strandat 230.635 kb on - strandat 230.635 kb on - strandat 230.635 kb on - strandat 230.635 kb on - strandat 230.993 kb on + strandat 230.993 kb on + strandat 230.994 kb on - strandat 231.116 kb on + strand, within AMB_RS01045at 231.116 kb on + strand, within AMB_RS01045at 231.116 kb on + strand, within AMB_RS01045at 231.117 kb on - strand, within AMB_RS01045at 231.117 kb on - strand, within AMB_RS01045at 231.117 kb on - strand, within AMB_RS01045at 231.117 kb on - strand, within AMB_RS01045at 231.117 kb on - strand, within AMB_RS01045at 231.117 kb on - strand, within AMB_RS01045at 231.305 kb on + strand, within AMB_RS01045at 231.305 kb on + strand, within AMB_RS01045at 231.306 kb on - strand, within AMB_RS01045at 231.306 kb on - strand, within AMB_RS01045

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron2
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229,232 - -0.5
229,684 - +0.2
229,724 + +0.3
229,724 + +1.0
229,724 + +0.3
229,724 + -0.3
229,724 + -0.4
229,724 + -1.2
229,725 - -0.4
229,725 - -0.3
229,725 - -0.2
229,725 - -0.4
229,893 + AMB_RS01035 0.19 +0.2
229,893 + AMB_RS01035 0.19 +0.2
229,894 - AMB_RS01035 0.19 -0.5
230,097 + AMB_RS01035 0.48 +0.9
230,097 + AMB_RS01035 0.48 -0.2
230,097 + AMB_RS01035 0.48 -0.8
230,097 + AMB_RS01035 0.48 -0.4
230,097 + AMB_RS01035 0.48 -0.2
230,097 + AMB_RS01035 0.48 -0.3
230,097 + AMB_RS01035 0.48 -0.3
230,098 - AMB_RS01035 0.48 -0.0
230,098 - AMB_RS01035 0.48 +0.5
230,121 + AMB_RS01035 0.52 -0.3
230,122 - AMB_RS01035 0.52 +0.2
230,122 - AMB_RS01035 0.52 +0.3
230,122 - AMB_RS01035 0.52 +0.1
230,122 - AMB_RS01035 0.52 +0.3
230,122 - AMB_RS01035 0.52 -0.3
230,319 + AMB_RS01035 0.80 -0.7
230,319 + AMB_RS01035 0.80 +0.3
230,319 + AMB_RS01035 0.80 +1.5
230,319 + AMB_RS01035 0.80 -1.0
230,319 + AMB_RS01035 0.80 -1.9
230,319 + AMB_RS01035 0.80 -0.6
230,320 - AMB_RS01035 0.81 -0.2
230,320 - AMB_RS01035 0.81 -2.3
230,320 - AMB_RS01035 0.81 -0.3
230,320 - AMB_RS01035 0.81 +0.3
230,320 - AMB_RS01035 0.81 -0.0
230,320 - AMB_RS01035 0.81 -0.5
230,322 + AMB_RS01035 0.81 -0.0
230,322 + AMB_RS01035 0.81 +0.6
230,370 + AMB_RS01035 0.88 +0.0
230,451 + +0.2
230,451 + -0.1
230,452 - +0.4
230,471 - +0.0
230,471 - -0.5
230,487 + -0.3
230,488 - -0.9
230,497 - +0.5
230,556 + -0.2
230,556 + -0.7
230,557 - +0.8
230,588 + -0.4
230,588 + -0.7
230,588 + +0.0
230,589 - +0.4
230,589 - +1.1
230,590 + -0.6
230,634 + -0.7
230,634 + -0.5
230,635 - -0.3
230,635 - -0.5
230,635 - -0.1
230,635 - -0.5
230,993 + -0.8
230,993 + -0.1
230,994 - -0.7
231,116 + AMB_RS01045 0.23 -0.7
231,116 + AMB_RS01045 0.23 +0.1
231,116 + AMB_RS01045 0.23 +0.5
231,117 - AMB_RS01045 0.23 -0.2
231,117 - AMB_RS01045 0.23 +0.5
231,117 - AMB_RS01045 0.23 -0.1
231,117 - AMB_RS01045 0.23 -0.4
231,117 - AMB_RS01045 0.23 +0.3
231,117 - AMB_RS01045 0.23 +0.3
231,305 + AMB_RS01045 0.58 -0.5
231,305 + AMB_RS01045 0.58 +0.7
231,306 - AMB_RS01045 0.58 +0.8
231,306 - AMB_RS01045 0.58 +1.1

Or see this region's nucleotide sequence