Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00490

Experiment: without_iron2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	without_iron2
107,548	-		AMB_RS00485	0.32	-0.3
107,590	+		AMB_RS00485	0.36	-1.1
107,590	+		AMB_RS00485	0.36	+0.3
107,591	-		AMB_RS00485	0.36	-0.8
107,647	-		AMB_RS00485	0.42	-0.5
107,802	+		AMB_RS00485	0.56	-0.4
107,802	+		AMB_RS00485	0.56	-0.4
107,802	+		AMB_RS00485	0.56	-0.6
107,803	-		AMB_RS00485	0.57	-1.2
107,803	-		AMB_RS00485	0.57	+0.8
107,803	-		AMB_RS00485	0.57	+0.5
107,803	-		AMB_RS00485	0.57	-0.1
107,803	-		AMB_RS00485	0.57	+0.2
107,803	-		AMB_RS00485	0.57	+0.1
107,803	-		AMB_RS00485	0.57	-0.4
107,873	-		AMB_RS00485	0.63	-0.2
107,902	+		AMB_RS00485	0.66	+0.6
107,903	-		AMB_RS00485	0.66	-0.1
107,904	+		AMB_RS00485	0.66	-0.2
107,904	+		AMB_RS00485	0.66	-1.8
107,904	+		AMB_RS00485	0.66	-0.4
107,905	-		AMB_RS00485	0.66	-3.5
107,946	+		AMB_RS00485	0.70	-0.6
107,947	-		AMB_RS00485	0.70	-1.9
107,947	-		AMB_RS00485	0.70	-0.2
107,947	-		AMB_RS00485	0.70	+0.2
107,947	-		AMB_RS00485	0.70	+0.1
107,962	-		AMB_RS00485	0.72	-1.4
107,973	+		AMB_RS00485	0.73	-0.3
107,973	+		AMB_RS00485	0.73	-0.8
107,973	+		AMB_RS00485	0.73	-0.3
107,973	+		AMB_RS00485	0.73	-0.5
107,973	+		AMB_RS00485	0.73	+0.5
107,974	-		AMB_RS00485	0.73	-0.5
108,025	+		AMB_RS00485	0.78	-0.1
108,025	+		AMB_RS00485	0.78	+0.0
108,025	+		AMB_RS00485	0.78	+1.3
108,026	-		AMB_RS00485	0.78	-0.6
108,026	-		AMB_RS00485	0.78	-0.4
108,026	-		AMB_RS00485	0.78	-0.1
108,054	+		AMB_RS00485	0.81	-0.0
108,054	+		AMB_RS00485	0.81	-0.1
108,055	-		AMB_RS00485	0.81	-0.4
108,055	-		AMB_RS00485	0.81	-0.1
108,088	+		AMB_RS00485	0.84	+0.3
108,089	-		AMB_RS00485	0.84	+1.0
108,165	-				+0.0
108,167	+				+0.1
108,167	+				+0.5
108,167	+				+1.1
108,167	+				-0.1
108,168	-				+0.9
108,168	-				-0.3
108,168	-				+0.5
108,168	-				-1.4
108,168	-				+0.5
108,168	-				+0.6
108,168	-				-0.1
108,168	-				+0.5
108,195	+				-0.3
108,195	+				-1.3
108,195	+				-0.1
108,196	-				-1.5
108,196	-				-0.2
108,243	+				+0.5
108,243	+				+0.4
108,243	+				+0.2
108,243	+				-0.1
108,243	+				-0.0
108,243	+				-0.7
108,243	+				-0.2
108,243	+				-0.1
108,244	-				+0.2
108,244	-				+0.0
108,244	-				+0.6
108,244	-				+0.2
108,244	-				-0.0
108,244	-				-0.2
108,244	-				-1.1
108,244	-				-0.2
108,244	-				-0.4
108,244	-				-0.2
108,247	+				+1.0
108,247	+				+0.6
108,247	+				+0.3
108,247	+				-0.2
108,247	+				-0.8
108,247	+				+1.1
108,247	+				-1.6
108,247	+				-0.0
108,247	+				+0.3
108,247	+				+0.1
108,247	+				-0.7
108,247	+				-0.2
108,247	+				+0.8
108,248	-				+1.5
108,248	-				+0.1
108,248	-				-2.1
108,248	-				-0.0
108,248	-				-0.5
108,248	-				-0.3
108,248	-				-0.3
108,248	-				-0.3
108,251	-				-0.2
108,305	+				+0.1
108,306	-				-0.3
108,306	-				+0.7
108,343	+				-0.0
108,343	+				+0.2
108,343	+				-0.7
108,343	+				+1.1
108,344	-				+0.0
108,344	-				-0.7
108,344	-				+0.4
108,344	-				+0.1
108,349	-				-0.7
108,349	-				-1.8
108,349	-				+1.8
108,365	-				-1.0
108,413	+				-0.4
108,414	-				+0.3
108,414	-				+0.3
108,440	-				-0.2
108,787	+		AMB_RS00490	0.17	-0.1
108,788	-		AMB_RS00490	0.17	+1.1
108,788	-		AMB_RS00490	0.17	-0.3
108,788	-		AMB_RS00490	0.17	-0.5
108,950	+		AMB_RS00490	0.24	-0.7
108,950	+		AMB_RS00490	0.24	-1.1
108,952	+		AMB_RS00490	0.24	+0.5
108,952	+		AMB_RS00490	0.24	+0.5
108,953	-		AMB_RS00490	0.24	+1.1
108,953	-		AMB_RS00490	0.24	+0.1
108,953	-		AMB_RS00490	0.24	-1.1
108,957	-		AMB_RS00490	0.24	-0.3
108,957	-		AMB_RS00490	0.24	-0.1
108,976	+		AMB_RS00490	0.25	-0.2
108,977	-		AMB_RS00490	0.25	-0.5
109,000	+		AMB_RS00490	0.26	-0.9
109,040	+		AMB_RS00490	0.28	-0.0
109,090	-		AMB_RS00490	0.31	-0.6
109,114	+		AMB_RS00490	0.32	-0.2
109,187	-		AMB_RS00490	0.35	+0.2
109,346	+		AMB_RS00490	0.42	-0.4
109,383	+		AMB_RS00490	0.44	-0.1
109,383	+		AMB_RS00490	0.44	-1.0
109,451	-		AMB_RS00490	0.47	-0.7
109,492	-		AMB_RS00490	0.49	+1.5
109,520	+		AMB_RS00490	0.50	+0.4
109,521	-		AMB_RS00490	0.50	-0.9
109,568	-		AMB_RS00490	0.53	-0.5
109,568	-		AMB_RS00490	0.53	-0.5
109,638	+		AMB_RS00490	0.56	-1.2
109,638	+		AMB_RS00490	0.56	-1.0
109,638	+		AMB_RS00490	0.56	+0.5
109,639	-		AMB_RS00490	0.56	-0.1
109,639	-		AMB_RS00490	0.56	-0.3
109,639	-		AMB_RS00490	0.56	+0.8
109,680	-		AMB_RS00490	0.58	+0.8
109,680	-		AMB_RS00490	0.58	-0.5
109,774	-		AMB_RS00490	0.62	+0.1
109,808	+		AMB_RS00490	0.64	-0.6
109,874	+		AMB_RS00490	0.67	+0.5
109,899	-		AMB_RS00490	0.68	+0.6
109,899	-		AMB_RS00490	0.68	-2.8
109,901	-		AMB_RS00490	0.68	+0.5
109,912	+		AMB_RS00490	0.68	-0.5
109,913	-		AMB_RS00490	0.69	-0.1
109,932	+		AMB_RS00490	0.69	-0.3
109,932	+		AMB_RS00490	0.69	+0.4
109,932	+		AMB_RS00490	0.69	-1.4
109,934	+		AMB_RS00490	0.69	-0.4
109,935	-		AMB_RS00490	0.70	-0.4
110,033	+		AMB_RS00490	0.74	-1.3
110,033	+		AMB_RS00490	0.74	-0.2
110,034	-		AMB_RS00490	0.74	-0.1
110,034	-		AMB_RS00490	0.74	-0.1
110,034	-		AMB_RS00490	0.74	-0.9
110,034	-		AMB_RS00490	0.74	+0.1
110,045	+		AMB_RS00490	0.75	-0.8
110,045	+		AMB_RS00490	0.75	+0.5
110,045	+		AMB_RS00490	0.75	-0.3
110,046	-		AMB_RS00490	0.75	+0.4
110,046	-		AMB_RS00490	0.75	+0.0
110,046	-		AMB_RS00490	0.75	-0.2
110,046	-		AMB_RS00490	0.75	-0.7
110,046	-		AMB_RS00490	0.75	-0.0
110,096	+		AMB_RS00490	0.77	+0.0
110,097	-		AMB_RS00490	0.77	-0.4
110,264	+		AMB_RS00490	0.85	-0.3
110,265	-		AMB_RS00490	0.85	-0.4
110,363	+		AMB_RS00490	0.89	+1.4
110,363	+		AMB_RS00490	0.89	-0.2
110,363	+		AMB_RS00490	0.89	-1.3
110,363	+		AMB_RS00490	0.89	+0.0
110,378	+		AMB_RS00490	0.90	-3.4
110,378	+		AMB_RS00490	0.90	-0.5
110,378	+		AMB_RS00490	0.90	+0.2
110,379	-				+1.5
110,379	-				+1.1
110,412	+				+0.2
110,412	+				+0.6
110,413	-				-0.7
110,413	-				+0.2
110,516	+				-1.2
110,516	+				-1.0
110,516	+				-0.2
110,517	-				+0.5
110,517	-				-0.8
110,546	+				-0.2
110,547	-				-0.1
110,595	-				-0.4
110,644	+				+0.0
110,644	+				-0.6
110,644	+				-1.2
110,645	-				-0.6
110,645	-				+0.4
110,645	-				+0.2
110,645	-				+0.1
111,469	-		AMB_RS00495	0.45	+0.5