Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20810 and ABIE41_RS20815 are separated by 265 nucleotides ABIE41_RS20815 and ABIE41_RS20820 are separated by 334 nucleotides ABIE41_RS20820 and ABIE41_RS20825 are separated by 9 nucleotides
ABIE41_RS20810: ABIE41_RS20810 - globin-coupled sensor protein, at 4,277,848 to 4,279,485
_RS20810
ABIE41_RS20815: ABIE41_RS20815 - Maf-like protein, at 4,279,751 to 4,280,359
_RS20815
ABIE41_RS20820: ABIE41_RS20820 - hypothetical protein, at 4,280,694 to 4,281,083
_RS20820
ABIE41_RS20825: ABIE41_RS20825 - phosphatidylcholine/phosphatidylserine synthase, at 4,281,093 to 4,281,941
_RS20825
Position (kb) 4279
4280
4281 Strain fitness (log2 ratio) -1
0
1 at 4279.005 kb on - strand, within ABIE41_RS20810 at 4279.164 kb on - strand, within ABIE41_RS20810 at 4279.176 kb on - strand, within ABIE41_RS20810 at 4279.238 kb on + strand, within ABIE41_RS20810 at 4279.608 kb on - strand at 4280.771 kb on + strand, within ABIE41_RS20820 at 4280.771 kb on + strand, within ABIE41_RS20820
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 4,279,005 - ABIE41_RS20810 0.71 -1.3 4,279,164 - ABIE41_RS20810 0.80 +0.2 4,279,176 - ABIE41_RS20810 0.81 -0.2 4,279,238 + ABIE41_RS20810 0.85 +1.4 4,279,608 - -0.9 4,280,771 + ABIE41_RS20820 0.20 +1.3 4,280,771 + ABIE41_RS20820 0.20 +0.9
Or see this region's nucleotide sequence