Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17295

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17290 and ABIE41_RS17295 are separated by 19 nucleotidesABIE41_RS17295 and ABIE41_RS17300 are separated by 48 nucleotidesABIE41_RS17300 and ABIE41_RS17305 are separated by 167 nucleotides ABIE41_RS17290: ABIE41_RS17290 - acyl-CoA dehydrogenase family protein, at 3,562,418 to 3,563,620 _RS17290 ABIE41_RS17295: ABIE41_RS17295 - benzoate-CoA ligase family protein, at 3,563,640 to 3,565,271 _RS17295 ABIE41_RS17300: ABIE41_RS17300 - RidA family protein, at 3,565,320 to 3,565,724 _RS17300 ABIE41_RS17305: ABIE41_RS17305 - EF-hand domain-containing protein, at 3,565,892 to 3,566,527 _RS17305 Position (kb) 3563 3564 3565 3566Strain fitness (log2 ratio) -2 -1 0 1 2at 3562.643 kb on + strand, within ABIE41_RS17290at 3562.643 kb on + strand, within ABIE41_RS17290at 3562.798 kb on + strand, within ABIE41_RS17290at 3562.970 kb on + strand, within ABIE41_RS17290at 3562.970 kb on + strand, within ABIE41_RS17290at 3562.970 kb on + strand, within ABIE41_RS17290at 3562.970 kb on + strand, within ABIE41_RS17290at 3562.971 kb on - strand, within ABIE41_RS17290at 3562.971 kb on - strand, within ABIE41_RS17290at 3562.971 kb on - strand, within ABIE41_RS17290at 3562.971 kb on - strand, within ABIE41_RS17290at 3562.971 kb on - strand, within ABIE41_RS17290at 3563.555 kb on + strandat 3563.555 kb on + strandat 3563.555 kb on + strandat 3563.556 kb on - strandat 3563.556 kb on - strandat 3563.663 kb on + strandat 3563.742 kb on + strandat 3563.743 kb on - strandat 3563.743 kb on - strandat 3563.844 kb on + strand, within ABIE41_RS17295at 3563.844 kb on + strand, within ABIE41_RS17295at 3563.844 kb on + strand, within ABIE41_RS17295at 3563.845 kb on - strand, within ABIE41_RS17295at 3563.845 kb on - strand, within ABIE41_RS17295at 3563.964 kb on + strand, within ABIE41_RS17295at 3564.037 kb on - strand, within ABIE41_RS17295at 3564.192 kb on + strand, within ABIE41_RS17295at 3564.193 kb on - strand, within ABIE41_RS17295at 3564.193 kb on - strand, within ABIE41_RS17295at 3564.322 kb on - strand, within ABIE41_RS17295at 3564.322 kb on - strand, within ABIE41_RS17295at 3564.528 kb on + strand, within ABIE41_RS17295at 3564.751 kb on - strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.903 kb on + strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.904 kb on - strand, within ABIE41_RS17295at 3564.905 kb on + strand, within ABIE41_RS17295at 3564.933 kb on + strand, within ABIE41_RS17295at 3564.939 kb on - strand, within ABIE41_RS17295at 3564.972 kb on + strand, within ABIE41_RS17295at 3565.083 kb on + strand, within ABIE41_RS17295at 3565.083 kb on + strand, within ABIE41_RS17295at 3565.083 kb on + strand, within ABIE41_RS17295at 3565.083 kb on + strand, within ABIE41_RS17295at 3565.084 kb on - strand, within ABIE41_RS17295at 3565.084 kb on - strand, within ABIE41_RS17295at 3565.084 kb on - strand, within ABIE41_RS17295at 3565.084 kb on - strand, within ABIE41_RS17295at 3565.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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3,562,643 + ABIE41_RS17290 0.19 -0.8
3,562,643 + ABIE41_RS17290 0.19 -0.2
3,562,798 + ABIE41_RS17290 0.32 +0.6
3,562,970 + ABIE41_RS17290 0.46 -0.3
3,562,970 + ABIE41_RS17290 0.46 -0.6
3,562,970 + ABIE41_RS17290 0.46 -0.3
3,562,970 + ABIE41_RS17290 0.46 -1.7
3,562,971 - ABIE41_RS17290 0.46 -0.6
3,562,971 - ABIE41_RS17290 0.46 -1.9
3,562,971 - ABIE41_RS17290 0.46 -1.2
3,562,971 - ABIE41_RS17290 0.46 -0.2
3,562,971 - ABIE41_RS17290 0.46 +0.7
3,563,555 + -0.0
3,563,555 + +0.0
3,563,555 + +0.6
3,563,556 - +2.3
3,563,556 - -0.1
3,563,663 + +1.0
3,563,742 + -0.5
3,563,743 - -1.1
3,563,743 - -0.3
3,563,844 + ABIE41_RS17295 0.12 +0.6
3,563,844 + ABIE41_RS17295 0.12 -0.1
3,563,844 + ABIE41_RS17295 0.12 +0.9
3,563,845 - ABIE41_RS17295 0.13 +1.4
3,563,845 - ABIE41_RS17295 0.13 -1.0
3,563,964 + ABIE41_RS17295 0.20 -0.5
3,564,037 - ABIE41_RS17295 0.24 +1.1
3,564,192 + ABIE41_RS17295 0.34 -2.2
3,564,193 - ABIE41_RS17295 0.34 +0.3
3,564,193 - ABIE41_RS17295 0.34 -0.1
3,564,322 - ABIE41_RS17295 0.42 +1.0
3,564,322 - ABIE41_RS17295 0.42 -0.7
3,564,528 + ABIE41_RS17295 0.54 +0.3
3,564,751 - ABIE41_RS17295 0.68 -0.0
3,564,903 + ABIE41_RS17295 0.77 +0.4
3,564,903 + ABIE41_RS17295 0.77 -0.2
3,564,903 + ABIE41_RS17295 0.77 -0.9
3,564,903 + ABIE41_RS17295 0.77 +1.2
3,564,903 + ABIE41_RS17295 0.77 -0.3
3,564,903 + ABIE41_RS17295 0.77 +0.5
3,564,903 + ABIE41_RS17295 0.77 -0.7
3,564,903 + ABIE41_RS17295 0.77 +0.1
3,564,903 + ABIE41_RS17295 0.77 +0.1
3,564,903 + ABIE41_RS17295 0.77 +1.2
3,564,903 + ABIE41_RS17295 0.77 +0.7
3,564,903 + ABIE41_RS17295 0.77 -1.0
3,564,904 - ABIE41_RS17295 0.77 -0.2
3,564,904 - ABIE41_RS17295 0.77 +0.9
3,564,904 - ABIE41_RS17295 0.77 -0.3
3,564,904 - ABIE41_RS17295 0.77 -2.2
3,564,904 - ABIE41_RS17295 0.77 -0.2
3,564,904 - ABIE41_RS17295 0.77 +0.5
3,564,904 - ABIE41_RS17295 0.77 -0.0
3,564,904 - ABIE41_RS17295 0.77 +0.3
3,564,904 - ABIE41_RS17295 0.77 +0.3
3,564,904 - ABIE41_RS17295 0.77 -0.1
3,564,904 - ABIE41_RS17295 0.77 -0.2
3,564,905 + ABIE41_RS17295 0.78 +0.3
3,564,933 + ABIE41_RS17295 0.79 +0.6
3,564,939 - ABIE41_RS17295 0.80 -0.2
3,564,972 + ABIE41_RS17295 0.82 -0.2
3,565,083 + ABIE41_RS17295 0.88 +0.3
3,565,083 + ABIE41_RS17295 0.88 +1.4
3,565,083 + ABIE41_RS17295 0.88 +0.3
3,565,083 + ABIE41_RS17295 0.88 -0.9
3,565,084 - ABIE41_RS17295 0.88 -0.2
3,565,084 - ABIE41_RS17295 0.88 +0.2
3,565,084 - ABIE41_RS17295 0.88 -0.3
3,565,084 - ABIE41_RS17295 0.88 +0.0
3,565,174 - +0.3

Or see this region's nucleotide sequence