Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16620

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16615 and ABIE41_RS16620 are separated by 2 nucleotidesABIE41_RS16620 and ABIE41_RS16625 overlap by 4 nucleotides ABIE41_RS16615: ABIE41_RS16615 - hydantoinase/oxoprolinase family protein, at 3,418,302 to 3,420,362 _RS16615 ABIE41_RS16620: ABIE41_RS16620 - cysteine hydrolase, at 3,420,365 to 3,420,979 _RS16620 ABIE41_RS16625: ABIE41_RS16625 - FAD-dependent oxidoreductase, at 3,420,976 to 3,422,385 _RS16625 Position (kb) 3420 3421Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3419.374 kb on - strand, within ABIE41_RS16615at 3419.374 kb on - strand, within ABIE41_RS16615at 3419.908 kb on - strand, within ABIE41_RS16615at 3419.926 kb on - strand, within ABIE41_RS16615at 3420.031 kb on - strand, within ABIE41_RS16615at 3420.031 kb on - strand, within ABIE41_RS16615at 3420.189 kb on + strandat 3420.450 kb on - strand, within ABIE41_RS16620at 3420.717 kb on - strand, within ABIE41_RS16620at 3420.728 kb on + strand, within ABIE41_RS16620at 3420.728 kb on + strand, within ABIE41_RS16620at 3420.728 kb on + strand, within ABIE41_RS16620at 3421.230 kb on + strand, within ABIE41_RS16625at 3421.230 kb on + strand, within ABIE41_RS16625at 3421.357 kb on + strand, within ABIE41_RS16625at 3421.621 kb on + strand, within ABIE41_RS16625at 3421.621 kb on + strand, within ABIE41_RS16625at 3421.621 kb on + strand, within ABIE41_RS16625at 3421.621 kb on + strand, within ABIE41_RS16625at 3421.621 kb on + strand, within ABIE41_RS16625at 3421.621 kb on + strand, within ABIE41_RS16625at 3421.621 kb on + strand, within ABIE41_RS16625at 3421.621 kb on + strand, within ABIE41_RS16625at 3421.622 kb on - strand, within ABIE41_RS16625at 3421.622 kb on - strand, within ABIE41_RS16625at 3421.622 kb on - strand, within ABIE41_RS16625at 3421.622 kb on - strand, within ABIE41_RS16625at 3421.849 kb on + strand, within ABIE41_RS16625at 3421.850 kb on - strand, within ABIE41_RS16625

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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3,419,374 - ABIE41_RS16615 0.52 +0.6
3,419,374 - ABIE41_RS16615 0.52 -0.1
3,419,908 - ABIE41_RS16615 0.78 -1.1
3,419,926 - ABIE41_RS16615 0.79 -0.7
3,420,031 - ABIE41_RS16615 0.84 +0.0
3,420,031 - ABIE41_RS16615 0.84 +0.6
3,420,189 + +0.4
3,420,450 - ABIE41_RS16620 0.14 +1.5
3,420,717 - ABIE41_RS16620 0.57 -0.7
3,420,728 + ABIE41_RS16620 0.59 +0.8
3,420,728 + ABIE41_RS16620 0.59 +0.3
3,420,728 + ABIE41_RS16620 0.59 +0.4
3,421,230 + ABIE41_RS16625 0.18 +0.0
3,421,230 + ABIE41_RS16625 0.18 -2.6
3,421,357 + ABIE41_RS16625 0.27 +1.4
3,421,621 + ABIE41_RS16625 0.46 +0.2
3,421,621 + ABIE41_RS16625 0.46 +0.3
3,421,621 + ABIE41_RS16625 0.46 +0.3
3,421,621 + ABIE41_RS16625 0.46 -0.5
3,421,621 + ABIE41_RS16625 0.46 -0.5
3,421,621 + ABIE41_RS16625 0.46 -0.2
3,421,621 + ABIE41_RS16625 0.46 +1.3
3,421,621 + ABIE41_RS16625 0.46 -1.4
3,421,622 - ABIE41_RS16625 0.46 +3.0
3,421,622 - ABIE41_RS16625 0.46 -0.1
3,421,622 - ABIE41_RS16625 0.46 -0.2
3,421,622 - ABIE41_RS16625 0.46 -0.5
3,421,849 + ABIE41_RS16625 0.62 +1.3
3,421,850 - ABIE41_RS16625 0.62 +1.6

Or see this region's nucleotide sequence