Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16615 and ABIE41_RS16620 are separated by 2 nucleotides ABIE41_RS16620 and ABIE41_RS16625 overlap by 4 nucleotides
ABIE41_RS16615: ABIE41_RS16615 - hydantoinase/oxoprolinase family protein, at 3,418,302 to 3,420,362
_RS16615
ABIE41_RS16620: ABIE41_RS16620 - cysteine hydrolase, at 3,420,365 to 3,420,979
_RS16620
ABIE41_RS16625: ABIE41_RS16625 - FAD-dependent oxidoreductase, at 3,420,976 to 3,422,385
_RS16625
Position (kb)
3420
3421 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3419.374 kb on - strand, within ABIE41_RS16615 at 3419.374 kb on - strand, within ABIE41_RS16615 at 3419.908 kb on - strand, within ABIE41_RS16615 at 3419.926 kb on - strand, within ABIE41_RS16615 at 3420.031 kb on - strand, within ABIE41_RS16615 at 3420.031 kb on - strand, within ABIE41_RS16615 at 3420.189 kb on + strand at 3420.450 kb on - strand, within ABIE41_RS16620 at 3420.717 kb on - strand, within ABIE41_RS16620 at 3420.728 kb on + strand, within ABIE41_RS16620 at 3420.728 kb on + strand, within ABIE41_RS16620 at 3420.728 kb on + strand, within ABIE41_RS16620 at 3421.230 kb on + strand, within ABIE41_RS16625 at 3421.230 kb on + strand, within ABIE41_RS16625 at 3421.357 kb on + strand, within ABIE41_RS16625 at 3421.621 kb on + strand, within ABIE41_RS16625 at 3421.621 kb on + strand, within ABIE41_RS16625 at 3421.621 kb on + strand, within ABIE41_RS16625 at 3421.621 kb on + strand, within ABIE41_RS16625 at 3421.621 kb on + strand, within ABIE41_RS16625 at 3421.621 kb on + strand, within ABIE41_RS16625 at 3421.621 kb on + strand, within ABIE41_RS16625 at 3421.621 kb on + strand, within ABIE41_RS16625 at 3421.622 kb on - strand, within ABIE41_RS16625 at 3421.622 kb on - strand, within ABIE41_RS16625 at 3421.622 kb on - strand, within ABIE41_RS16625 at 3421.622 kb on - strand, within ABIE41_RS16625 at 3421.849 kb on + strand, within ABIE41_RS16625 at 3421.850 kb on - strand, within ABIE41_RS16625
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 3,419,374 - ABIE41_RS16615 0.52 +0.6 3,419,374 - ABIE41_RS16615 0.52 -0.1 3,419,908 - ABIE41_RS16615 0.78 -1.1 3,419,926 - ABIE41_RS16615 0.79 -0.7 3,420,031 - ABIE41_RS16615 0.84 +0.0 3,420,031 - ABIE41_RS16615 0.84 +0.6 3,420,189 + +0.4 3,420,450 - ABIE41_RS16620 0.14 +1.5 3,420,717 - ABIE41_RS16620 0.57 -0.7 3,420,728 + ABIE41_RS16620 0.59 +0.8 3,420,728 + ABIE41_RS16620 0.59 +0.3 3,420,728 + ABIE41_RS16620 0.59 +0.4 3,421,230 + ABIE41_RS16625 0.18 +0.0 3,421,230 + ABIE41_RS16625 0.18 -2.6 3,421,357 + ABIE41_RS16625 0.27 +1.4 3,421,621 + ABIE41_RS16625 0.46 +0.2 3,421,621 + ABIE41_RS16625 0.46 +0.3 3,421,621 + ABIE41_RS16625 0.46 +0.3 3,421,621 + ABIE41_RS16625 0.46 -0.5 3,421,621 + ABIE41_RS16625 0.46 -0.5 3,421,621 + ABIE41_RS16625 0.46 -0.2 3,421,621 + ABIE41_RS16625 0.46 +1.3 3,421,621 + ABIE41_RS16625 0.46 -1.4 3,421,622 - ABIE41_RS16625 0.46 +3.0 3,421,622 - ABIE41_RS16625 0.46 -0.1 3,421,622 - ABIE41_RS16625 0.46 -0.2 3,421,622 - ABIE41_RS16625 0.46 -0.5 3,421,849 + ABIE41_RS16625 0.62 +1.3 3,421,850 - ABIE41_RS16625 0.62 +1.6
Or see this region's nucleotide sequence