Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13585

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS13580 and ABIE41_RS13585 are separated by 44 nucleotidesABIE41_RS13585 and ABIE41_RS13590 are separated by 75 nucleotidesABIE41_RS13590 and ABIE41_RS13595 are separated by 146 nucleotides ABIE41_RS13580: ABIE41_RS13580 - hypothetical protein, at 2,789,889 to 2,790,869 _RS13580 ABIE41_RS13585: ABIE41_RS13585 - glutathione S-transferase family protein, at 2,790,914 to 2,791,591 _RS13585 ABIE41_RS13590: ABIE41_RS13590 - ribulose-phosphate 3-epimerase, at 2,791,667 to 2,792,351 _RS13590 ABIE41_RS13595: ABIE41_RS13595 - adenylosuccinate lyase, at 2,792,498 to 2,793,805 _RS13595 Position (kb) 2790 2791 2792Strain fitness (log2 ratio) -2 -1 0 1at 2790.273 kb on + strand, within ABIE41_RS13580at 2790.273 kb on + strand, within ABIE41_RS13580at 2790.274 kb on - strand, within ABIE41_RS13580at 2790.523 kb on - strand, within ABIE41_RS13580at 2790.645 kb on + strand, within ABIE41_RS13580at 2790.713 kb on + strand, within ABIE41_RS13580at 2790.713 kb on + strand, within ABIE41_RS13580at 2790.713 kb on + strand, within ABIE41_RS13580at 2790.713 kb on + strand, within ABIE41_RS13580at 2790.926 kb on + strandat 2790.926 kb on + strandat 2790.926 kb on + strandat 2790.927 kb on - strandat 2790.929 kb on - strandat 2791.069 kb on + strand, within ABIE41_RS13585at 2791.112 kb on + strand, within ABIE41_RS13585at 2791.136 kb on + strand, within ABIE41_RS13585at 2791.654 kb on + strandat 2791.654 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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2,790,273 + ABIE41_RS13580 0.39 -1.1
2,790,273 + ABIE41_RS13580 0.39 +0.2
2,790,274 - ABIE41_RS13580 0.39 -1.3
2,790,523 - ABIE41_RS13580 0.65 +0.1
2,790,645 + ABIE41_RS13580 0.77 -0.3
2,790,713 + ABIE41_RS13580 0.84 -0.4
2,790,713 + ABIE41_RS13580 0.84 -1.0
2,790,713 + ABIE41_RS13580 0.84 -1.0
2,790,713 + ABIE41_RS13580 0.84 -2.0
2,790,926 + -0.2
2,790,926 + +0.0
2,790,926 + +0.1
2,790,927 - -0.3
2,790,929 - +0.0
2,791,069 + ABIE41_RS13585 0.23 +0.2
2,791,112 + ABIE41_RS13585 0.29 +0.5
2,791,136 + ABIE41_RS13585 0.33 +0.2
2,791,654 + -0.5
2,791,654 + +0.9

Or see this region's nucleotide sequence