Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS13580 and ABIE41_RS13585 are separated by 44 nucleotides ABIE41_RS13585 and ABIE41_RS13590 are separated by 75 nucleotides ABIE41_RS13590 and ABIE41_RS13595 are separated by 146 nucleotides
ABIE41_RS13580: ABIE41_RS13580 - hypothetical protein, at 2,789,889 to 2,790,869
_RS13580
ABIE41_RS13585: ABIE41_RS13585 - glutathione S-transferase family protein, at 2,790,914 to 2,791,591
_RS13585
ABIE41_RS13590: ABIE41_RS13590 - ribulose-phosphate 3-epimerase, at 2,791,667 to 2,792,351
_RS13590
ABIE41_RS13595: ABIE41_RS13595 - adenylosuccinate lyase, at 2,792,498 to 2,793,805
_RS13595
Position (kb)
2790
2791
2792 Strain fitness (log2 ratio)
-2
-1
0
1 at 2790.273 kb on + strand, within ABIE41_RS13580 at 2790.273 kb on + strand, within ABIE41_RS13580 at 2790.274 kb on - strand, within ABIE41_RS13580 at 2790.523 kb on - strand, within ABIE41_RS13580 at 2790.645 kb on + strand, within ABIE41_RS13580 at 2790.713 kb on + strand, within ABIE41_RS13580 at 2790.713 kb on + strand, within ABIE41_RS13580 at 2790.713 kb on + strand, within ABIE41_RS13580 at 2790.713 kb on + strand, within ABIE41_RS13580 at 2790.926 kb on + strand at 2790.926 kb on + strand at 2790.926 kb on + strand at 2790.927 kb on - strand at 2790.929 kb on - strand at 2791.069 kb on + strand, within ABIE41_RS13585 at 2791.112 kb on + strand, within ABIE41_RS13585 at 2791.136 kb on + strand, within ABIE41_RS13585 at 2791.654 kb on + strand at 2791.654 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 2,790,273 + ABIE41_RS13580 0.39 -1.1 2,790,273 + ABIE41_RS13580 0.39 +0.2 2,790,274 - ABIE41_RS13580 0.39 -1.3 2,790,523 - ABIE41_RS13580 0.65 +0.1 2,790,645 + ABIE41_RS13580 0.77 -0.3 2,790,713 + ABIE41_RS13580 0.84 -0.4 2,790,713 + ABIE41_RS13580 0.84 -1.0 2,790,713 + ABIE41_RS13580 0.84 -1.0 2,790,713 + ABIE41_RS13580 0.84 -2.0 2,790,926 + -0.2 2,790,926 + +0.0 2,790,926 + +0.1 2,790,927 - -0.3 2,790,929 - +0.0 2,791,069 + ABIE41_RS13585 0.23 +0.2 2,791,112 + ABIE41_RS13585 0.29 +0.5 2,791,136 + ABIE41_RS13585 0.33 +0.2 2,791,654 + -0.5 2,791,654 + +0.9
Or see this region's nucleotide sequence