Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01850

Experiment: D-Mannitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS01840 and ABIE41_RS01845 are separated by 108 nucleotidesABIE41_RS01845 and ABIE41_RS01850 are separated by 12 nucleotidesABIE41_RS01850 and ABIE41_RS01855 are separated by 200 nucleotides ABIE41_RS01840: ABIE41_RS01840 - 5,6-dimethylbenzimidazole synthase, at 372,825 to 373,448 _RS01840 ABIE41_RS01845: ABIE41_RS01845 - 3-oxoacid CoA-transferase subunit B, at 373,557 to 374,210 _RS01845 ABIE41_RS01850: ABIE41_RS01850 - CoA transferase subunit A, at 374,223 to 374,927 _RS01850 ABIE41_RS01855: ABIE41_RS01855 - caspase family protein, at 375,128 to 376,795 _RS01855 Position (kb) 374 375Strain fitness (log2 ratio) -2 -1 0 1 2at 373.233 kb on + strand, within ABIE41_RS01840at 373.234 kb on - strand, within ABIE41_RS01840at 373.234 kb on - strand, within ABIE41_RS01840at 373.234 kb on - strand, within ABIE41_RS01840at 373.234 kb on - strand, within ABIE41_RS01840at 373.446 kb on + strandat 374.038 kb on + strand, within ABIE41_RS01845at 374.038 kb on + strand, within ABIE41_RS01845at 374.039 kb on - strand, within ABIE41_RS01845at 374.107 kb on + strand, within ABIE41_RS01845at 374.107 kb on + strand, within ABIE41_RS01845at 374.107 kb on + strand, within ABIE41_RS01845at 374.107 kb on + strand, within ABIE41_RS01845at 374.107 kb on + strand, within ABIE41_RS01845at 374.107 kb on + strand, within ABIE41_RS01845at 374.108 kb on - strand, within ABIE41_RS01845at 374.108 kb on - strand, within ABIE41_RS01845at 374.108 kb on - strand, within ABIE41_RS01845at 374.108 kb on - strand, within ABIE41_RS01845at 374.108 kb on - strand, within ABIE41_RS01845at 374.108 kb on - strand, within ABIE41_RS01845at 374.108 kb on - strand, within ABIE41_RS01845at 374.149 kb on + strandat 374.149 kb on + strandat 374.149 kb on + strandat 374.150 kb on - strandat 374.150 kb on - strandat 374.426 kb on - strand, within ABIE41_RS01850at 374.503 kb on + strand, within ABIE41_RS01850at 374.503 kb on + strand, within ABIE41_RS01850at 374.504 kb on - strand, within ABIE41_RS01850at 374.504 kb on - strand, within ABIE41_RS01850at 374.662 kb on + strand, within ABIE41_RS01850at 374.662 kb on + strand, within ABIE41_RS01850at 374.662 kb on + strand, within ABIE41_RS01850at 374.662 kb on + strand, within ABIE41_RS01850at 374.662 kb on + strand, within ABIE41_RS01850at 374.662 kb on + strand, within ABIE41_RS01850at 374.663 kb on - strand, within ABIE41_RS01850at 374.663 kb on - strand, within ABIE41_RS01850at 374.663 kb on - strand, within ABIE41_RS01850at 374.663 kb on - strand, within ABIE41_RS01850at 374.695 kb on + strand, within ABIE41_RS01850at 374.695 kb on + strand, within ABIE41_RS01850at 374.695 kb on + strand, within ABIE41_RS01850at 374.696 kb on - strand, within ABIE41_RS01850at 374.696 kb on - strand, within ABIE41_RS01850at 374.914 kb on + strandat 374.915 kb on - strandat 374.930 kb on + strandat 374.930 kb on + strandat 374.979 kb on + strandat 374.979 kb on + strandat 374.979 kb on + strandat 374.979 kb on + strandat 375.273 kb on + strandat 375.273 kb on + strandat 375.274 kb on - strandat 375.382 kb on - strand, within ABIE41_RS01855at 375.807 kb on + strand, within ABIE41_RS01855at 375.816 kb on + strand, within ABIE41_RS01855at 375.817 kb on - strand, within ABIE41_RS01855at 375.817 kb on - strand, within ABIE41_RS01855at 375.817 kb on - strand, within ABIE41_RS01855at 375.817 kb on - strand, within ABIE41_RS01855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
remove
373,233 + ABIE41_RS01840 0.65 +0.6
373,234 - ABIE41_RS01840 0.66 -1.0
373,234 - ABIE41_RS01840 0.66 +0.1
373,234 - ABIE41_RS01840 0.66 -1.0
373,234 - ABIE41_RS01840 0.66 +1.2
373,446 + +2.4
374,038 + ABIE41_RS01845 0.74 -0.9
374,038 + ABIE41_RS01845 0.74 -0.0
374,039 - ABIE41_RS01845 0.74 -0.5
374,107 + ABIE41_RS01845 0.84 -0.3
374,107 + ABIE41_RS01845 0.84 -0.1
374,107 + ABIE41_RS01845 0.84 +0.3
374,107 + ABIE41_RS01845 0.84 -0.6
374,107 + ABIE41_RS01845 0.84 +0.3
374,107 + ABIE41_RS01845 0.84 -1.3
374,108 - ABIE41_RS01845 0.84 -0.3
374,108 - ABIE41_RS01845 0.84 +1.3
374,108 - ABIE41_RS01845 0.84 -0.3
374,108 - ABIE41_RS01845 0.84 +0.3
374,108 - ABIE41_RS01845 0.84 +0.4
374,108 - ABIE41_RS01845 0.84 -0.8
374,108 - ABIE41_RS01845 0.84 +1.5
374,149 + +1.6
374,149 + -0.5
374,149 + +0.9
374,150 - -0.9
374,150 - +0.0
374,426 - ABIE41_RS01850 0.29 +0.1
374,503 + ABIE41_RS01850 0.40 +0.4
374,503 + ABIE41_RS01850 0.40 -0.5
374,504 - ABIE41_RS01850 0.40 +0.5
374,504 - ABIE41_RS01850 0.40 +0.3
374,662 + ABIE41_RS01850 0.62 -0.1
374,662 + ABIE41_RS01850 0.62 +0.1
374,662 + ABIE41_RS01850 0.62 -0.6
374,662 + ABIE41_RS01850 0.62 -0.4
374,662 + ABIE41_RS01850 0.62 +1.0
374,662 + ABIE41_RS01850 0.62 -2.1
374,663 - ABIE41_RS01850 0.62 +1.5
374,663 - ABIE41_RS01850 0.62 -0.1
374,663 - ABIE41_RS01850 0.62 +0.2
374,663 - ABIE41_RS01850 0.62 +1.3
374,695 + ABIE41_RS01850 0.67 +0.5
374,695 + ABIE41_RS01850 0.67 +0.2
374,695 + ABIE41_RS01850 0.67 -0.4
374,696 - ABIE41_RS01850 0.67 +0.0
374,696 - ABIE41_RS01850 0.67 -1.1
374,914 + +0.3
374,915 - -0.8
374,930 + +0.2
374,930 + +0.5
374,979 + -0.3
374,979 + +0.8
374,979 + +0.2
374,979 + -0.8
375,273 + -1.0
375,273 + +0.3
375,274 - -0.6
375,382 - ABIE41_RS01855 0.15 -0.4
375,807 + ABIE41_RS01855 0.41 -0.8
375,816 + ABIE41_RS01855 0.41 +0.1
375,817 - ABIE41_RS01855 0.41 -0.6
375,817 - ABIE41_RS01855 0.41 +0.3
375,817 - ABIE41_RS01855 0.41 +0.1
375,817 - ABIE41_RS01855 0.41 -0.4

Or see this region's nucleotide sequence