Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27980 and ABIE40_RS27985 are separated by 538 nucleotides
ABIE40_RS27980: ABIE40_RS27980 - sensor histidine kinase, at 307,114 to 308,799
_RS27980
ABIE40_RS27985: ABIE40_RS27985 - HWE histidine kinase domain-containing protein, at 309,338 to 310,261
_RS27985
Position (kb) 309
310
311 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 308.436 kb on - strand, within ABIE40_RS27980 at 308.520 kb on + strand, within ABIE40_RS27980 at 308.520 kb on + strand, within ABIE40_RS27980 at 308.520 kb on + strand, within ABIE40_RS27980 at 308.521 kb on - strand, within ABIE40_RS27980 at 308.524 kb on + strand, within ABIE40_RS27980 at 308.524 kb on + strand, within ABIE40_RS27980 at 308.524 kb on + strand, within ABIE40_RS27980 at 308.524 kb on + strand, within ABIE40_RS27980 at 308.524 kb on + strand, within ABIE40_RS27980 at 308.525 kb on - strand, within ABIE40_RS27980 at 308.525 kb on - strand, within ABIE40_RS27980 at 308.525 kb on - strand, within ABIE40_RS27980 at 308.525 kb on - strand, within ABIE40_RS27980 at 308.525 kb on - strand, within ABIE40_RS27980 at 308.525 kb on - strand, within ABIE40_RS27980 at 308.735 kb on + strand at 308.735 kb on + strand at 308.744 kb on - strand at 308.782 kb on + strand at 308.829 kb on + strand at 308.829 kb on + strand at 308.829 kb on + strand at 308.830 kb on - strand at 308.831 kb on + strand at 308.831 kb on + strand at 308.832 kb on - strand at 308.832 kb on - strand at 308.832 kb on - strand at 309.005 kb on - strand at 309.005 kb on - strand at 309.109 kb on + strand at 309.109 kb on + strand at 309.109 kb on + strand at 309.110 kb on - strand at 309.112 kb on + strand at 309.113 kb on - strand at 309.140 kb on + strand at 309.140 kb on + strand at 309.141 kb on - strand at 309.153 kb on - strand at 309.153 kb on - strand at 309.216 kb on + strand at 309.245 kb on + strand at 309.246 kb on - strand at 309.290 kb on + strand at 309.291 kb on - strand at 309.328 kb on + strand at 309.329 kb on - strand at 309.333 kb on - strand at 309.379 kb on - strand at 309.397 kb on + strand at 309.398 kb on - strand at 309.416 kb on + strand at 309.527 kb on + strand, within ABIE40_RS27985 at 309.528 kb on - strand, within ABIE40_RS27985 at 309.528 kb on - strand, within ABIE40_RS27985 at 309.528 kb on - strand, within ABIE40_RS27985 at 309.569 kb on + strand, within ABIE40_RS27985 at 309.610 kb on - strand, within ABIE40_RS27985 at 309.619 kb on + strand, within ABIE40_RS27985 at 309.653 kb on + strand, within ABIE40_RS27985 at 309.712 kb on - strand, within ABIE40_RS27985 at 309.741 kb on + strand, within ABIE40_RS27985 at 309.793 kb on + strand, within ABIE40_RS27985 at 309.794 kb on - strand, within ABIE40_RS27985 at 309.850 kb on + strand, within ABIE40_RS27985 at 309.852 kb on + strand, within ABIE40_RS27985 at 309.853 kb on - strand, within ABIE40_RS27985 at 309.853 kb on - strand, within ABIE40_RS27985 at 309.853 kb on - strand, within ABIE40_RS27985 at 309.917 kb on - strand, within ABIE40_RS27985 at 310.184 kb on + strand at 310.184 kb on + strand at 310.185 kb on - strand at 310.185 kb on - strand at 310.185 kb on - strand at 310.398 kb on - strand at 310.423 kb on + strand at 310.424 kb on - strand at 310.424 kb on - strand at 310.424 kb on - strand at 310.524 kb on + strand at 310.585 kb on + strand at 310.585 kb on + strand at 310.585 kb on + strand at 310.585 kb on + strand at 310.586 kb on - strand at 310.617 kb on + strand at 310.617 kb on + strand at 310.618 kb on - strand at 310.700 kb on + strand at 310.740 kb on + strand at 310.740 kb on + strand at 310.741 kb on - strand at 310.745 kb on + strand at 310.745 kb on + strand at 310.746 kb on - strand at 310.746 kb on - strand at 310.746 kb on - strand at 310.757 kb on + strand at 310.758 kb on - strand at 310.758 kb on - strand at 310.828 kb on + strand at 310.905 kb on + strand at 310.906 kb on - strand at 310.906 kb on - strand at 310.912 kb on + strand at 310.912 kb on + strand at 310.913 kb on - strand at 311.228 kb on - strand at 311.250 kb on + strand at 311.250 kb on + strand at 311.251 kb on - strand at 311.251 kb on - strand at 311.251 kb on - strand at 311.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 308,436 - ABIE40_RS27980 0.78 -2.5 308,520 + ABIE40_RS27980 0.83 -1.5 308,520 + ABIE40_RS27980 0.83 -2.3 308,520 + ABIE40_RS27980 0.83 -0.5 308,521 - ABIE40_RS27980 0.83 +0.8 308,524 + ABIE40_RS27980 0.84 -0.3 308,524 + ABIE40_RS27980 0.84 +0.8 308,524 + ABIE40_RS27980 0.84 -1.5 308,524 + ABIE40_RS27980 0.84 -0.1 308,524 + ABIE40_RS27980 0.84 +0.0 308,525 - ABIE40_RS27980 0.84 -1.7 308,525 - ABIE40_RS27980 0.84 +1.2 308,525 - ABIE40_RS27980 0.84 -1.1 308,525 - ABIE40_RS27980 0.84 -3.0 308,525 - ABIE40_RS27980 0.84 +0.0 308,525 - ABIE40_RS27980 0.84 -0.2 308,735 + +0.2 308,735 + +0.1 308,744 - -1.3 308,782 + -0.9 308,829 + +0.9 308,829 + -1.9 308,829 + -2.6 308,830 - -0.2 308,831 + -1.4 308,831 + -1.3 308,832 - -1.3 308,832 - +0.8 308,832 - -1.5 309,005 - -1.1 309,005 - -1.9 309,109 + +2.6 309,109 + -0.2 309,109 + -1.2 309,110 - +0.1 309,112 + +0.9 309,113 - -0.5 309,140 + +0.7 309,140 + -0.2 309,141 - -1.0 309,153 - -0.7 309,153 - +0.9 309,216 + -0.6 309,245 + -1.0 309,246 - -0.2 309,290 + +1.3 309,291 - -1.8 309,328 + +0.6 309,329 - -1.4 309,333 - -4.2 309,379 - -1.8 309,397 + +0.6 309,398 - -3.5 309,416 + -0.7 309,527 + ABIE40_RS27985 0.20 -0.2 309,528 - ABIE40_RS27985 0.21 -1.4 309,528 - ABIE40_RS27985 0.21 -2.3 309,528 - ABIE40_RS27985 0.21 +0.9 309,569 + ABIE40_RS27985 0.25 +1.5 309,610 - ABIE40_RS27985 0.29 -3.6 309,619 + ABIE40_RS27985 0.30 +0.1 309,653 + ABIE40_RS27985 0.34 -0.7 309,712 - ABIE40_RS27985 0.40 +1.4 309,741 + ABIE40_RS27985 0.44 +1.5 309,793 + ABIE40_RS27985 0.49 +0.6 309,794 - ABIE40_RS27985 0.49 +0.4 309,850 + ABIE40_RS27985 0.55 +0.1 309,852 + ABIE40_RS27985 0.56 +1.9 309,853 - ABIE40_RS27985 0.56 -1.2 309,853 - ABIE40_RS27985 0.56 +0.7 309,853 - ABIE40_RS27985 0.56 -1.4 309,917 - ABIE40_RS27985 0.63 +1.6 310,184 + +1.4 310,184 + +0.7 310,185 - +1.0 310,185 - -0.2 310,185 - -1.2 310,398 - -1.8 310,423 + -0.5 310,424 - -0.4 310,424 - +1.7 310,424 - -0.0 310,524 + +0.6 310,585 + -2.6 310,585 + +0.5 310,585 + +0.2 310,585 + +0.1 310,586 - -0.6 310,617 + +1.6 310,617 + -0.7 310,618 - -1.1 310,700 + -0.5 310,740 + +1.1 310,740 + -0.7 310,741 - -0.1 310,745 + +1.1 310,745 + -1.1 310,746 - -0.3 310,746 - +0.3 310,746 - -0.7 310,757 + -2.8 310,758 - -0.9 310,758 - +2.7 310,828 + +1.0 310,905 + +0.5 310,906 - -0.2 310,906 - -0.8 310,912 + +0.6 310,912 + -0.0 310,913 - +0.8 311,228 - -1.1 311,250 + -0.2 311,250 + -0.9 311,251 - +0.1 311,251 - -2.0 311,251 - -1.1 311,251 - -0.3
Or see this region's nucleotide sequence