Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS27725

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS27720 and ABIE40_RS27725 are separated by 121 nucleotidesABIE40_RS27725 and ABIE40_RS27730 are separated by 217 nucleotidesABIE40_RS27730 and ABIE40_RS27735 are separated by 566 nucleotides ABIE40_RS27720: ABIE40_RS27720 - DUF1236 domain-containing protein, at 254,773 to 255,639 _RS27720 ABIE40_RS27725: ABIE40_RS27725 - DUF1236 domain-containing protein, at 255,761 to 256,045 _RS27725 ABIE40_RS27730: ABIE40_RS27730 - hypothetical protein, at 256,263 to 256,424 _RS27730 ABIE40_RS27735: ABIE40_RS27735 - metalloregulator ArsR/SmtB family transcription factor, at 256,991 to 257,284 _RS27735 Position (kb) 255 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 254.774 kb on + strandat 254.789 kb on + strandat 254.789 kb on + strandat 255.022 kb on + strand, within ABIE40_RS27720at 255.072 kb on + strand, within ABIE40_RS27720at 255.072 kb on + strand, within ABIE40_RS27720at 255.097 kb on - strand, within ABIE40_RS27720at 255.097 kb on - strand, within ABIE40_RS27720at 255.189 kb on + strand, within ABIE40_RS27720at 255.190 kb on - strand, within ABIE40_RS27720at 255.595 kb on + strandat 255.596 kb on - strandat 255.601 kb on + strandat 255.602 kb on - strandat 255.644 kb on + strandat 255.645 kb on - strandat 255.678 kb on - strandat 255.721 kb on + strandat 255.721 kb on + strandat 255.722 kb on - strandat 255.763 kb on - strandat 255.837 kb on + strand, within ABIE40_RS27725at 255.838 kb on - strand, within ABIE40_RS27725at 255.959 kb on + strand, within ABIE40_RS27725at 255.960 kb on - strand, within ABIE40_RS27725at 256.039 kb on + strandat 256.040 kb on - strandat 256.148 kb on + strandat 256.424 kb on + strandat 256.424 kb on + strandat 256.425 kb on - strandat 256.425 kb on - strandat 256.425 kb on - strandat 256.425 kb on - strandat 256.500 kb on + strandat 256.500 kb on + strandat 256.500 kb on + strandat 256.500 kb on + strandat 256.501 kb on - strandat 256.501 kb on - strandat 256.501 kb on - strandat 256.501 kb on - strandat 256.501 kb on - strandat 256.566 kb on + strandat 256.575 kb on + strandat 256.575 kb on + strandat 256.576 kb on - strandat 256.576 kb on - strandat 256.576 kb on - strandat 256.612 kb on + strandat 256.613 kb on - strandat 256.613 kb on - strandat 256.613 kb on - strandat 256.701 kb on - strandat 256.701 kb on - strandat 256.769 kb on + strandat 256.994 kb on + strandat 256.994 kb on + strandat 256.995 kb on - strandat 256.995 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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254,774 + -0.5
254,789 + -0.7
254,789 + +0.1
255,022 + ABIE40_RS27720 0.29 -1.2
255,072 + ABIE40_RS27720 0.34 +0.5
255,072 + ABIE40_RS27720 0.34 +0.3
255,097 - ABIE40_RS27720 0.37 +0.2
255,097 - ABIE40_RS27720 0.37 +0.5
255,189 + ABIE40_RS27720 0.48 +0.3
255,190 - ABIE40_RS27720 0.48 +0.3
255,595 + -3.0
255,596 - +0.3
255,601 + +1.5
255,602 - +0.4
255,644 + -1.3
255,645 - +0.0
255,678 - +1.9
255,721 + -0.1
255,721 + -1.3
255,722 - +2.3
255,763 - +0.2
255,837 + ABIE40_RS27725 0.27 -1.8
255,838 - ABIE40_RS27725 0.27 -0.5
255,959 + ABIE40_RS27725 0.69 -3.5
255,960 - ABIE40_RS27725 0.70 +1.6
256,039 + +0.7
256,040 - +0.1
256,148 + -0.0
256,424 + +0.4
256,424 + -0.4
256,425 - +0.3
256,425 - -2.1
256,425 - -0.7
256,425 - +1.4
256,500 + +1.6
256,500 + -1.6
256,500 + +1.9
256,500 + -2.2
256,501 - +0.4
256,501 - +0.8
256,501 - +0.3
256,501 - +0.8
256,501 - -2.3
256,566 + -0.6
256,575 + -2.1
256,575 + +0.3
256,576 - +2.6
256,576 - -0.7
256,576 - -0.2
256,612 + -0.9
256,613 - +1.1
256,613 - +1.8
256,613 - -0.2
256,701 - +0.0
256,701 - -0.4
256,769 + +2.4
256,994 + -0.9
256,994 + -0.3
256,995 - -1.5
256,995 - -0.9

Or see this region's nucleotide sequence