Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27050 and ABIE40_RS27055 are separated by 130 nucleotides ABIE40_RS27055 and ABIE40_RS27060 are separated by 348 nucleotides ABIE40_RS27060 and ABIE40_RS27065 are separated by 246 nucleotides
ABIE40_RS27050: ABIE40_RS27050 - hypothetical protein, at 128,560 to 128,958
_RS27050
ABIE40_RS27055: ABIE40_RS27055 - transposase, at 129,089 to 129,445
_RS27055
ABIE40_RS27060: ABIE40_RS27060 - ISNCY family transposase, at 129,794 to 131,166
_RS27060
ABIE40_RS27065: ABIE40_RS27065 - IS30 family transposase, at 131,413 to 132,423
_RS27065
Position (kb) 129
130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.933 kb on + strand at 128.934 kb on - strand at 128.934 kb on - strand at 129.322 kb on + strand, within ABIE40_RS27055 at 129.322 kb on + strand, within ABIE40_RS27055 at 129.323 kb on - strand, within ABIE40_RS27055 at 129.392 kb on + strand, within ABIE40_RS27055 at 129.393 kb on - strand, within ABIE40_RS27055 at 129.393 kb on - strand, within ABIE40_RS27055 at 129.393 kb on - strand, within ABIE40_RS27055 at 129.393 kb on - strand, within ABIE40_RS27055 at 129.393 kb on - strand, within ABIE40_RS27055 at 129.432 kb on + strand at 129.432 kb on + strand at 129.514 kb on + strand at 129.515 kb on - strand at 129.515 kb on - strand at 129.631 kb on - strand at 129.637 kb on + strand at 129.637 kb on + strand at 129.637 kb on + strand at 129.638 kb on - strand at 129.638 kb on - strand at 129.639 kb on + strand at 129.639 kb on + strand at 129.640 kb on - strand at 129.640 kb on - strand at 129.640 kb on - strand at 129.640 kb on - strand at 129.644 kb on + strand at 129.645 kb on - strand at 129.646 kb on + strand at 129.690 kb on - strand at 129.870 kb on + strand at 129.870 kb on + strand at 129.870 kb on + strand at 129.870 kb on + strand at 129.870 kb on + strand at 129.871 kb on - strand at 129.871 kb on - strand at 130.046 kb on - strand, within ABIE40_RS27060 at 130.208 kb on - strand, within ABIE40_RS27060 at 130.373 kb on - strand, within ABIE40_RS27060 at 130.406 kb on - strand, within ABIE40_RS27060 at 130.406 kb on - strand, within ABIE40_RS27060 at 131.381 kb on - strand at 131.425 kb on + strand at 131.425 kb on + strand at 131.425 kb on + strand at 131.550 kb on + strand, within ABIE40_RS27065 at 131.551 kb on - strand, within ABIE40_RS27065 at 131.591 kb on - strand, within ABIE40_RS27065 at 131.591 kb on - strand, within ABIE40_RS27065 at 131.591 kb on - strand, within ABIE40_RS27065 at 131.593 kb on + strand, within ABIE40_RS27065 at 131.593 kb on + strand, within ABIE40_RS27065 at 131.594 kb on - strand, within ABIE40_RS27065 at 131.594 kb on - strand, within ABIE40_RS27065 at 131.594 kb on - strand, within ABIE40_RS27065 at 131.648 kb on + strand, within ABIE40_RS27065 at 131.649 kb on - strand, within ABIE40_RS27065 at 131.649 kb on - strand, within ABIE40_RS27065 at 131.773 kb on + strand, within ABIE40_RS27065 at 131.774 kb on - strand, within ABIE40_RS27065 at 132.045 kb on + strand, within ABIE40_RS27065
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 128,933 + +0.8 128,934 - +0.1 128,934 - +1.4 129,322 + ABIE40_RS27055 0.65 +0.6 129,322 + ABIE40_RS27055 0.65 -2.0 129,323 - ABIE40_RS27055 0.66 -1.3 129,392 + ABIE40_RS27055 0.85 +0.8 129,393 - ABIE40_RS27055 0.85 -0.9 129,393 - ABIE40_RS27055 0.85 -0.0 129,393 - ABIE40_RS27055 0.85 -1.2 129,393 - ABIE40_RS27055 0.85 +1.3 129,393 - ABIE40_RS27055 0.85 -2.1 129,432 + -1.7 129,432 + -2.3 129,514 + -1.9 129,515 - +1.0 129,515 - -1.3 129,631 - +1.0 129,637 + +1.3 129,637 + -0.6 129,637 + -0.5 129,638 - +0.3 129,638 - +0.6 129,639 + -1.4 129,639 + -3.5 129,640 - -0.6 129,640 - -0.1 129,640 - -1.0 129,640 - +0.1 129,644 + -3.3 129,645 - -1.2 129,646 + -0.9 129,690 - +0.4 129,870 + -0.4 129,870 + -1.6 129,870 + -1.0 129,870 + -0.1 129,870 + -2.7 129,871 - -2.6 129,871 - -0.9 130,046 - ABIE40_RS27060 0.18 +0.0 130,208 - ABIE40_RS27060 0.30 -3.5 130,373 - ABIE40_RS27060 0.42 -1.8 130,406 - ABIE40_RS27060 0.45 -2.1 130,406 - ABIE40_RS27060 0.45 -3.4 131,381 - -1.6 131,425 + -1.8 131,425 + -1.4 131,425 + -1.4 131,550 + ABIE40_RS27065 0.14 -2.3 131,551 - ABIE40_RS27065 0.14 +1.3 131,591 - ABIE40_RS27065 0.18 -1.3 131,591 - ABIE40_RS27065 0.18 -1.0 131,591 - ABIE40_RS27065 0.18 -0.4 131,593 + ABIE40_RS27065 0.18 +1.4 131,593 + ABIE40_RS27065 0.18 -2.8 131,594 - ABIE40_RS27065 0.18 +1.9 131,594 - ABIE40_RS27065 0.18 +0.9 131,594 - ABIE40_RS27065 0.18 +0.1 131,648 + ABIE40_RS27065 0.23 +0.0 131,649 - ABIE40_RS27065 0.23 -2.6 131,649 - ABIE40_RS27065 0.23 -2.4 131,773 + ABIE40_RS27065 0.36 +0.3 131,774 - ABIE40_RS27065 0.36 -0.1 132,045 + ABIE40_RS27065 0.63 -2.9
Or see this region's nucleotide sequence