Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25860

Experiment: L-Citrulline (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Citrulline (C)
1,352,713	+		ABIE40_RS25855	0.52	-2.5
1,352,713	+		ABIE40_RS25855	0.52	+1.3
1,352,713	+		ABIE40_RS25855	0.52	-1.9
1,352,714	-		ABIE40_RS25855	0.52	+1.4
1,352,714	-		ABIE40_RS25855	0.52	-2.0
1,352,714	-		ABIE40_RS25855	0.52	-0.2
1,352,714	-		ABIE40_RS25855	0.52	+1.0
1,352,752	+		ABIE40_RS25855	0.54	-1.6
1,352,752	+		ABIE40_RS25855	0.54	+0.3
1,352,752	+		ABIE40_RS25855	0.54	-0.3
1,352,752	+		ABIE40_RS25855	0.54	-0.1
1,352,753	-		ABIE40_RS25855	0.54	-0.4
1,352,753	-		ABIE40_RS25855	0.54	+1.5
1,352,753	-		ABIE40_RS25855	0.54	-0.3
1,352,753	-		ABIE40_RS25855	0.54	-0.6
1,352,788	+		ABIE40_RS25855	0.56	-3.3
1,352,788	+		ABIE40_RS25855	0.56	-0.9
1,352,789	-		ABIE40_RS25855	0.56	-3.9
1,352,789	-		ABIE40_RS25855	0.56	-0.5
1,352,789	-		ABIE40_RS25855	0.56	-1.4
1,352,789	-		ABIE40_RS25855	0.56	+0.4
1,352,937	+		ABIE40_RS25855	0.63	-2.2
1,352,937	+		ABIE40_RS25855	0.63	+0.1
1,352,938	-		ABIE40_RS25855	0.63	+1.4
1,353,010	-		ABIE40_RS25855	0.67	+0.8
1,353,010	-		ABIE40_RS25855	0.67	-0.2
1,353,172	+		ABIE40_RS25855	0.75	+0.5
1,353,173	-		ABIE40_RS25855	0.76	+1.7
1,353,173	-		ABIE40_RS25855	0.76	-1.5
1,353,313	+		ABIE40_RS25855	0.83	-1.6
1,353,313	+		ABIE40_RS25855	0.83	+1.0
1,353,314	-		ABIE40_RS25855	0.83	+0.5
1,353,314	-		ABIE40_RS25855	0.83	+2.9
1,353,345	+		ABIE40_RS25855	0.84	+0.5
1,353,345	+		ABIE40_RS25855	0.84	+0.7
1,353,345	+		ABIE40_RS25855	0.84	+0.3
1,353,345	+		ABIE40_RS25855	0.84	+2.2
1,353,345	+		ABIE40_RS25855	0.84	+0.6
1,353,346	-		ABIE40_RS25855	0.84	+0.5
1,353,346	-		ABIE40_RS25855	0.84	-3.2
1,353,346	-		ABIE40_RS25855	0.84	-0.1
1,353,468	+				+0.8
1,353,468	+				+0.1
1,353,469	-				-1.5
1,353,598	+				-0.7
1,353,598	+				-2.8
1,353,598	+				-0.2
1,353,600	+				+0.6
1,353,600	+				-0.8
1,353,601	-				+2.0
1,353,601	-				-0.9
1,353,601	-				-1.4
1,353,649	+				-3.4
1,353,756	+				-0.2
1,353,756	+				-0.1
1,353,756	+				-1.0
1,353,757	-				+0.4
1,353,831	-				+0.2
1,353,831	-				-0.9
1,354,031	+		ABIE40_RS25860	0.12	+1.9
1,354,031	+		ABIE40_RS25860	0.12	+0.8
1,354,031	+		ABIE40_RS25860	0.12	-0.7
1,354,032	-		ABIE40_RS25860	0.12	-0.7
1,354,032	-		ABIE40_RS25860	0.12	+2.1
1,354,032	-		ABIE40_RS25860	0.12	+1.0
1,354,032	-		ABIE40_RS25860	0.12	-0.6
1,354,032	-		ABIE40_RS25860	0.12	+0.3
1,354,032	-		ABIE40_RS25860	0.12	-1.5
1,354,073	+		ABIE40_RS25860	0.13	-1.2
1,354,130	+		ABIE40_RS25860	0.15	-1.1
1,354,131	-		ABIE40_RS25860	0.15	-2.6
1,354,131	-		ABIE40_RS25860	0.15	-2.1
1,354,234	-		ABIE40_RS25860	0.19	-0.5
1,354,234	-		ABIE40_RS25860	0.19	-1.6
1,354,388	+		ABIE40_RS25860	0.24	-0.8
1,354,388	+		ABIE40_RS25860	0.24	+0.6
1,354,388	+		ABIE40_RS25860	0.24	-0.4
1,354,388	+		ABIE40_RS25860	0.24	-0.8
1,354,388	+		ABIE40_RS25860	0.24	+0.1
1,354,388	+		ABIE40_RS25860	0.24	+0.1
1,354,388	+		ABIE40_RS25860	0.24	+0.3
1,354,388	+		ABIE40_RS25860	0.24	-1.5
1,354,389	-		ABIE40_RS25860	0.24	-0.0
1,354,389	-		ABIE40_RS25860	0.24	-0.2
1,354,389	-		ABIE40_RS25860	0.24	+0.1
1,354,389	-		ABIE40_RS25860	0.24	-0.8
1,354,389	-		ABIE40_RS25860	0.24	-1.4
1,354,389	-		ABIE40_RS25860	0.24	+0.1
1,354,389	-		ABIE40_RS25860	0.24	-1.0
1,354,389	-		ABIE40_RS25860	0.24	-0.6
1,354,389	-		ABIE40_RS25860	0.24	+2.2
1,354,389	-		ABIE40_RS25860	0.24	-2.0
1,354,389	-		ABIE40_RS25860	0.24	-0.9
1,354,389	-		ABIE40_RS25860	0.24	-3.3
1,354,389	-		ABIE40_RS25860	0.24	-0.1
1,354,389	-		ABIE40_RS25860	0.24	+0.7
1,354,389	-		ABIE40_RS25860	0.24	+1.4
1,354,389	-		ABIE40_RS25860	0.24	-2.8
1,354,392	+		ABIE40_RS25860	0.24	-0.2
1,354,392	+		ABIE40_RS25860	0.24	+0.4
1,354,392	+		ABIE40_RS25860	0.24	-2.5
1,354,392	+		ABIE40_RS25860	0.24	-0.6
1,354,392	+		ABIE40_RS25860	0.24	-2.4
1,354,392	+		ABIE40_RS25860	0.24	+0.4
1,354,393	-		ABIE40_RS25860	0.24	-0.6
1,354,393	-		ABIE40_RS25860	0.24	-3.0
1,354,393	-		ABIE40_RS25860	0.24	+0.4
1,354,393	-		ABIE40_RS25860	0.24	-0.7
1,354,393	-		ABIE40_RS25860	0.24	+0.7
1,354,393	-		ABIE40_RS25860	0.24	+0.2
1,354,393	-		ABIE40_RS25860	0.24	-0.2
1,354,506	+		ABIE40_RS25860	0.28	-0.5
1,354,507	-		ABIE40_RS25860	0.28	-0.8
1,354,627	-		ABIE40_RS25860	0.32	-0.4
1,354,756	-		ABIE40_RS25860	0.36	-0.4
1,354,949	+		ABIE40_RS25860	0.42	-1.8
1,354,950	-		ABIE40_RS25860	0.42	-2.9
1,355,052	+		ABIE40_RS25860	0.46	+0.7
1,355,053	-		ABIE40_RS25860	0.46	+0.7
1,355,053	-		ABIE40_RS25860	0.46	-1.3
1,355,053	-		ABIE40_RS25860	0.46	-1.4
1,355,053	-		ABIE40_RS25860	0.46	-0.6
1,355,053	-		ABIE40_RS25860	0.46	+0.5
1,355,053	-		ABIE40_RS25860	0.46	+1.4
1,355,162	+		ABIE40_RS25860	0.49	+0.3
1,355,162	+		ABIE40_RS25860	0.49	+2.8
1,355,163	-		ABIE40_RS25860	0.49	+1.3
1,355,163	-		ABIE40_RS25860	0.49	-0.6
1,355,163	-		ABIE40_RS25860	0.49	-1.1
1,355,220	+		ABIE40_RS25860	0.51	-2.2
1,355,220	+		ABIE40_RS25860	0.51	-0.5
1,355,220	+		ABIE40_RS25860	0.51	+1.6
1,355,220	+		ABIE40_RS25860	0.51	+0.0
1,355,220	+		ABIE40_RS25860	0.51	+0.6
1,355,220	+		ABIE40_RS25860	0.51	-1.2
1,355,222	+		ABIE40_RS25860	0.51	-2.0
1,355,222	+		ABIE40_RS25860	0.51	-1.6
1,355,222	+		ABIE40_RS25860	0.51	-0.9
1,355,222	+		ABIE40_RS25860	0.51	-2.0
1,355,222	+		ABIE40_RS25860	0.51	+1.2
1,355,223	-		ABIE40_RS25860	0.51	-1.6
1,355,223	-		ABIE40_RS25860	0.51	+0.2
1,355,353	-		ABIE40_RS25860	0.56	+0.0
1,355,353	-		ABIE40_RS25860	0.56	+0.1
1,355,421	+		ABIE40_RS25860	0.58	-0.9
1,355,423	+		ABIE40_RS25860	0.58	+0.8
1,355,423	+		ABIE40_RS25860	0.58	+2.0
1,355,423	+		ABIE40_RS25860	0.58	+0.1
1,355,424	-		ABIE40_RS25860	0.58	+0.1
1,355,424	-		ABIE40_RS25860	0.58	+0.1
1,355,505	+		ABIE40_RS25860	0.61	+0.5
1,355,506	-		ABIE40_RS25860	0.61	-0.6
1,355,539	-		ABIE40_RS25860	0.62	-0.2
1,355,651	+		ABIE40_RS25860	0.65	-0.7
1,355,651	+		ABIE40_RS25860	0.65	-0.5
1,355,700	+		ABIE40_RS25860	0.67	+0.1
1,355,700	+		ABIE40_RS25860	0.67	+0.8
1,355,701	-		ABIE40_RS25860	0.67	-1.6
1,355,701	-		ABIE40_RS25860	0.67	+0.2
1,355,701	-		ABIE40_RS25860	0.67	-0.3
1,355,701	-		ABIE40_RS25860	0.67	+0.8
1,355,810	+		ABIE40_RS25860	0.71	-0.0
1,355,813	+		ABIE40_RS25860	0.71	-0.8
1,355,874	+		ABIE40_RS25860	0.73	+0.8
1,355,875	-		ABIE40_RS25860	0.73	-0.2
1,355,875	-		ABIE40_RS25860	0.73	-0.4
1,355,875	-		ABIE40_RS25860	0.73	-2.8
1,355,875	-		ABIE40_RS25860	0.73	+1.8
1,355,875	-		ABIE40_RS25860	0.73	-0.6
1,355,875	-		ABIE40_RS25860	0.73	-0.8
1,356,134	+		ABIE40_RS25860	0.81	+1.3
1,356,134	+		ABIE40_RS25860	0.81	+0.7
1,356,134	+		ABIE40_RS25860	0.81	+1.2
1,356,134	+		ABIE40_RS25860	0.81	+0.3
1,356,134	+		ABIE40_RS25860	0.81	+1.0
1,356,134	+		ABIE40_RS25860	0.81	+2.1
1,356,134	+		ABIE40_RS25860	0.81	-1.8
1,356,134	+		ABIE40_RS25860	0.81	+0.4
1,356,134	+		ABIE40_RS25860	0.81	+1.1
1,356,134	+		ABIE40_RS25860	0.81	-0.6
1,356,134	+		ABIE40_RS25860	0.81	-0.2
1,356,134	+		ABIE40_RS25860	0.81	+0.5
1,356,135	-		ABIE40_RS25860	0.81	-1.9
1,356,135	-		ABIE40_RS25860	0.81	-3.3
1,356,135	-		ABIE40_RS25860	0.81	-1.4
1,356,135	-		ABIE40_RS25860	0.81	-0.9
1,356,135	-		ABIE40_RS25860	0.81	+1.4
1,356,135	-		ABIE40_RS25860	0.81	+0.2
1,356,135	-		ABIE40_RS25860	0.81	-0.8
1,356,135	-		ABIE40_RS25860	0.81	+0.2
1,356,135	-		ABIE40_RS25860	0.81	-3.1
1,356,405	-				+0.9
1,356,443	+				-0.0
1,356,443	+				-0.9
1,356,443	+				-0.3
1,356,443	+				-2.9
1,356,443	+				-1.5
1,356,444	-				-2.1
1,356,444	-				+0.2
1,356,444	-				-1.3
1,356,444	-				+0.1
1,356,444	-				-0.3
1,356,444	-				+0.6
1,356,673	+				-1.3
1,356,674	-				+0.2
1,356,907	+				-1.6
1,356,908	-				-0.2
1,356,932	-				-1.0
1,356,932	-				+1.8
1,356,932	-				-1.2
1,356,962	+				-2.1
1,356,962	+				+0.3
1,356,962	+				+0.8
1,356,962	+				-0.2
1,356,963	-				+0.6
1,356,963	-				+0.5
1,356,978	+				-1.9
1,357,168	+				-1.0
1,357,169	-				-1.9
1,357,169	-				+0.6
1,357,214	+				+1.4
1,357,215	-				-0.8
1,357,215	-				+1.1
1,357,226	+				-0.9
1,357,265	+		ABIE40_RS25865	0.16	-0.3
1,357,266	-		ABIE40_RS25865	0.16	+1.4
1,357,389	-		ABIE40_RS25865	0.64	-1.1
1,357,389	-		ABIE40_RS25865	0.64	-0.7
1,357,434	-		ABIE40_RS25865	0.81	-1.3
1,357,680	-		ABIE40_RS25870	0.40	-1.3