Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22685 and ABIE40_RS22690 are separated by 96 nucleotides ABIE40_RS22690 and ABIE40_RS22695 are separated by 31 nucleotides ABIE40_RS22695 and ABIE40_RS22700 are separated by 86 nucleotides
ABIE40_RS22685: ABIE40_RS22685 - MarR family transcriptional regulator, at 685,867 to 686,343
_RS22685
ABIE40_RS22690: ABIE40_RS22690 - SDR family oxidoreductase, at 686,440 to 687,207
_RS22690
ABIE40_RS22695: ABIE40_RS22695 - helix-turn-helix domain-containing protein, at 687,239 to 688,144
_RS22695
ABIE40_RS22700: ABIE40_RS22700 - ABC transporter substrate-binding protein, at 688,231 to 689,505
_RS22700
Position (kb) 687
688
689 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 686.334 kb on - strand at 686.334 kb on - strand at 686.352 kb on + strand at 686.352 kb on + strand at 686.352 kb on + strand at 686.352 kb on + strand at 686.352 kb on + strand at 686.352 kb on + strand at 686.353 kb on - strand at 686.353 kb on - strand at 686.353 kb on - strand at 686.353 kb on - strand at 686.353 kb on - strand at 686.354 kb on + strand at 686.354 kb on + strand at 686.354 kb on + strand at 686.354 kb on + strand at 686.354 kb on + strand at 686.354 kb on + strand at 686.355 kb on - strand at 686.355 kb on - strand at 686.355 kb on - strand at 686.355 kb on - strand at 686.389 kb on - strand at 686.428 kb on + strand at 686.715 kb on + strand, within ABIE40_RS22690 at 686.715 kb on + strand, within ABIE40_RS22690 at 686.715 kb on + strand, within ABIE40_RS22690 at 686.715 kb on + strand, within ABIE40_RS22690 at 686.716 kb on - strand, within ABIE40_RS22690 at 686.716 kb on - strand, within ABIE40_RS22690 at 686.741 kb on + strand, within ABIE40_RS22690 at 686.741 kb on + strand, within ABIE40_RS22690 at 686.742 kb on - strand, within ABIE40_RS22690 at 686.742 kb on - strand, within ABIE40_RS22690 at 686.742 kb on - strand, within ABIE40_RS22690 at 686.796 kb on + strand, within ABIE40_RS22690 at 686.797 kb on - strand, within ABIE40_RS22690 at 686.797 kb on - strand, within ABIE40_RS22690 at 686.823 kb on + strand, within ABIE40_RS22690 at 686.823 kb on + strand, within ABIE40_RS22690 at 686.824 kb on - strand, within ABIE40_RS22690 at 686.947 kb on + strand, within ABIE40_RS22690 at 687.040 kb on - strand, within ABIE40_RS22690 at 687.432 kb on + strand, within ABIE40_RS22695 at 687.432 kb on + strand, within ABIE40_RS22695 at 687.432 kb on + strand, within ABIE40_RS22695 at 687.432 kb on + strand, within ABIE40_RS22695 at 687.433 kb on - strand, within ABIE40_RS22695 at 687.433 kb on - strand, within ABIE40_RS22695 at 687.433 kb on - strand, within ABIE40_RS22695 at 687.433 kb on - strand, within ABIE40_RS22695 at 687.433 kb on - strand, within ABIE40_RS22695 at 687.433 kb on - strand, within ABIE40_RS22695 at 687.433 kb on - strand, within ABIE40_RS22695 at 687.433 kb on - strand, within ABIE40_RS22695 at 687.480 kb on + strand, within ABIE40_RS22695 at 687.480 kb on + strand, within ABIE40_RS22695 at 687.481 kb on - strand, within ABIE40_RS22695 at 687.527 kb on - strand, within ABIE40_RS22695 at 687.639 kb on + strand, within ABIE40_RS22695 at 687.639 kb on + strand, within ABIE40_RS22695 at 687.723 kb on + strand, within ABIE40_RS22695 at 687.723 kb on + strand, within ABIE40_RS22695 at 687.723 kb on + strand, within ABIE40_RS22695 at 687.724 kb on - strand, within ABIE40_RS22695 at 687.993 kb on + strand, within ABIE40_RS22695 at 687.993 kb on + strand, within ABIE40_RS22695 at 687.993 kb on + strand, within ABIE40_RS22695 at 687.993 kb on + strand, within ABIE40_RS22695 at 687.993 kb on + strand, within ABIE40_RS22695 at 687.993 kb on + strand, within ABIE40_RS22695 at 687.993 kb on + strand, within ABIE40_RS22695 at 687.993 kb on + strand, within ABIE40_RS22695 at 687.993 kb on + strand, within ABIE40_RS22695 at 687.994 kb on - strand, within ABIE40_RS22695 at 687.994 kb on - strand, within ABIE40_RS22695 at 687.994 kb on - strand, within ABIE40_RS22695 at 687.994 kb on - strand, within ABIE40_RS22695 at 687.994 kb on - strand, within ABIE40_RS22695 at 687.994 kb on - strand, within ABIE40_RS22695 at 688.073 kb on + strand at 688.104 kb on + strand at 688.104 kb on + strand at 688.105 kb on - strand at 688.105 kb on - strand at 688.105 kb on - strand at 688.105 kb on - strand at 688.127 kb on - strand at 688.127 kb on - strand at 688.127 kb on - strand at 688.156 kb on - strand at 688.180 kb on + strand at 688.180 kb on + strand at 688.180 kb on + strand at 688.180 kb on + strand at 688.181 kb on - strand at 688.181 kb on - strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.246 kb on - strand at 688.291 kb on + strand at 688.292 kb on - strand at 688.292 kb on - strand at 688.379 kb on - strand, within ABIE40_RS22700 at 688.400 kb on + strand, within ABIE40_RS22700 at 688.558 kb on + strand, within ABIE40_RS22700 at 688.559 kb on - strand, within ABIE40_RS22700 at 688.559 kb on - strand, within ABIE40_RS22700 at 688.571 kb on + strand, within ABIE40_RS22700 at 688.666 kb on + strand, within ABIE40_RS22700 at 688.667 kb on - strand, within ABIE40_RS22700 at 688.667 kb on - strand, within ABIE40_RS22700 at 688.680 kb on - strand, within ABIE40_RS22700 at 688.682 kb on - strand, within ABIE40_RS22700 at 688.682 kb on - strand, within ABIE40_RS22700 at 688.847 kb on - strand, within ABIE40_RS22700 at 689.005 kb on + strand, within ABIE40_RS22700 at 689.005 kb on + strand, within ABIE40_RS22700 at 689.005 kb on + strand, within ABIE40_RS22700 at 689.005 kb on + strand, within ABIE40_RS22700 at 689.005 kb on + strand, within ABIE40_RS22700 at 689.005 kb on + strand, within ABIE40_RS22700 at 689.005 kb on + strand, within ABIE40_RS22700 at 689.005 kb on + strand, within ABIE40_RS22700 at 689.006 kb on - strand, within ABIE40_RS22700 at 689.006 kb on - strand, within ABIE40_RS22700 at 689.006 kb on - strand, within ABIE40_RS22700 at 689.006 kb on - strand, within ABIE40_RS22700 at 689.017 kb on + strand, within ABIE40_RS22700 at 689.017 kb on + strand, within ABIE40_RS22700 at 689.018 kb on - strand, within ABIE40_RS22700 at 689.018 kb on - strand, within ABIE40_RS22700 at 689.071 kb on + strand, within ABIE40_RS22700 at 689.071 kb on + strand, within ABIE40_RS22700 at 689.071 kb on + strand, within ABIE40_RS22700 at 689.071 kb on + strand, within ABIE40_RS22700 at 689.071 kb on + strand, within ABIE40_RS22700 at 689.072 kb on - strand, within ABIE40_RS22700 at 689.072 kb on - strand, within ABIE40_RS22700 at 689.072 kb on - strand, within ABIE40_RS22700
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 686,334 - +0.6 686,334 - -0.5 686,352 + -3.8 686,352 + +0.1 686,352 + -0.8 686,352 + +0.7 686,352 + -0.8 686,352 + +2.2 686,353 - -0.4 686,353 - -3.0 686,353 - -1.0 686,353 - -2.3 686,353 - -0.4 686,354 + -0.2 686,354 + -0.8 686,354 + -1.3 686,354 + +0.2 686,354 + -0.6 686,354 + -1.8 686,355 - -0.1 686,355 - -0.8 686,355 - -0.6 686,355 - +0.2 686,389 - -2.2 686,428 + +1.3 686,715 + ABIE40_RS22690 0.36 +1.7 686,715 + ABIE40_RS22690 0.36 -0.4 686,715 + ABIE40_RS22690 0.36 +0.7 686,715 + ABIE40_RS22690 0.36 -2.0 686,716 - ABIE40_RS22690 0.36 +1.2 686,716 - ABIE40_RS22690 0.36 +1.8 686,741 + ABIE40_RS22690 0.39 -0.4 686,741 + ABIE40_RS22690 0.39 +2.1 686,742 - ABIE40_RS22690 0.39 +3.2 686,742 - ABIE40_RS22690 0.39 -0.1 686,742 - ABIE40_RS22690 0.39 -0.2 686,796 + ABIE40_RS22690 0.46 -0.3 686,797 - ABIE40_RS22690 0.46 -2.5 686,797 - ABIE40_RS22690 0.46 -2.9 686,823 + ABIE40_RS22690 0.50 +0.9 686,823 + ABIE40_RS22690 0.50 +0.3 686,824 - ABIE40_RS22690 0.50 -1.8 686,947 + ABIE40_RS22690 0.66 +1.9 687,040 - ABIE40_RS22690 0.78 +2.2 687,432 + ABIE40_RS22695 0.21 -1.4 687,432 + ABIE40_RS22695 0.21 +1.2 687,432 + ABIE40_RS22695 0.21 +0.2 687,432 + ABIE40_RS22695 0.21 -2.0 687,433 - ABIE40_RS22695 0.21 +0.2 687,433 - ABIE40_RS22695 0.21 -2.7 687,433 - ABIE40_RS22695 0.21 +0.7 687,433 - ABIE40_RS22695 0.21 -0.4 687,433 - ABIE40_RS22695 0.21 +0.9 687,433 - ABIE40_RS22695 0.21 -2.2 687,433 - ABIE40_RS22695 0.21 -1.2 687,433 - ABIE40_RS22695 0.21 -1.5 687,480 + ABIE40_RS22695 0.27 +0.8 687,480 + ABIE40_RS22695 0.27 -0.3 687,481 - ABIE40_RS22695 0.27 -1.1 687,527 - ABIE40_RS22695 0.32 +2.5 687,639 + ABIE40_RS22695 0.44 +0.6 687,639 + ABIE40_RS22695 0.44 -1.7 687,723 + ABIE40_RS22695 0.53 +1.2 687,723 + ABIE40_RS22695 0.53 +0.5 687,723 + ABIE40_RS22695 0.53 -0.5 687,724 - ABIE40_RS22695 0.54 +0.9 687,993 + ABIE40_RS22695 0.83 -0.3 687,993 + ABIE40_RS22695 0.83 -0.3 687,993 + ABIE40_RS22695 0.83 -0.6 687,993 + ABIE40_RS22695 0.83 +1.2 687,993 + ABIE40_RS22695 0.83 +1.6 687,993 + ABIE40_RS22695 0.83 -0.0 687,993 + ABIE40_RS22695 0.83 -1.0 687,993 + ABIE40_RS22695 0.83 +0.3 687,993 + ABIE40_RS22695 0.83 -2.0 687,994 - ABIE40_RS22695 0.83 -2.2 687,994 - ABIE40_RS22695 0.83 -0.6 687,994 - ABIE40_RS22695 0.83 +0.6 687,994 - ABIE40_RS22695 0.83 +1.8 687,994 - ABIE40_RS22695 0.83 -1.0 687,994 - ABIE40_RS22695 0.83 -0.2 688,073 + -0.1 688,104 + +0.0 688,104 + -0.3 688,105 - +1.4 688,105 - -0.1 688,105 - +0.8 688,105 - -2.2 688,127 - +1.0 688,127 - -0.9 688,127 - -0.2 688,156 - +1.6 688,180 + +3.4 688,180 + -0.3 688,180 + -1.0 688,180 + +1.6 688,181 - -0.3 688,181 - +0.6 688,185 + -0.4 688,185 + -1.1 688,186 - -3.2 688,186 - -4.3 688,246 - +0.9 688,291 + +2.0 688,292 - -0.1 688,292 - +0.6 688,379 - ABIE40_RS22700 0.12 +0.4 688,400 + ABIE40_RS22700 0.13 +2.5 688,558 + ABIE40_RS22700 0.26 +0.9 688,559 - ABIE40_RS22700 0.26 -1.0 688,559 - ABIE40_RS22700 0.26 -0.4 688,571 + ABIE40_RS22700 0.27 -2.5 688,666 + ABIE40_RS22700 0.34 +2.3 688,667 - ABIE40_RS22700 0.34 -1.5 688,667 - ABIE40_RS22700 0.34 -2.2 688,680 - ABIE40_RS22700 0.35 +2.2 688,682 - ABIE40_RS22700 0.35 -1.4 688,682 - ABIE40_RS22700 0.35 -2.7 688,847 - ABIE40_RS22700 0.48 -0.5 689,005 + ABIE40_RS22700 0.61 +0.2 689,005 + ABIE40_RS22700 0.61 -2.4 689,005 + ABIE40_RS22700 0.61 +0.3 689,005 + ABIE40_RS22700 0.61 +1.0 689,005 + ABIE40_RS22700 0.61 -1.3 689,005 + ABIE40_RS22700 0.61 -0.4 689,005 + ABIE40_RS22700 0.61 +0.2 689,005 + ABIE40_RS22700 0.61 +0.9 689,006 - ABIE40_RS22700 0.61 +0.4 689,006 - ABIE40_RS22700 0.61 -1.6 689,006 - ABIE40_RS22700 0.61 -1.7 689,006 - ABIE40_RS22700 0.61 -0.5 689,017 + ABIE40_RS22700 0.62 -0.5 689,017 + ABIE40_RS22700 0.62 -0.3 689,018 - ABIE40_RS22700 0.62 -0.8 689,018 - ABIE40_RS22700 0.62 -2.9 689,071 + ABIE40_RS22700 0.66 -0.4 689,071 + ABIE40_RS22700 0.66 +0.7 689,071 + ABIE40_RS22700 0.66 +0.2 689,071 + ABIE40_RS22700 0.66 -0.5 689,071 + ABIE40_RS22700 0.66 -2.4 689,072 - ABIE40_RS22700 0.66 -0.1 689,072 - ABIE40_RS22700 0.66 +1.2 689,072 - ABIE40_RS22700 0.66 +5.0
Or see this region's nucleotide sequence