Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22540

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22530 and ABIE40_RS22535 are separated by 37 nucleotidesABIE40_RS22535 and ABIE40_RS22540 are separated by 36 nucleotidesABIE40_RS22540 and ABIE40_RS22545 are separated by 213 nucleotides ABIE40_RS22530: ABIE40_RS22530 - fumarylacetoacetate hydrolase family protein, at 642,596 to 643,366 _RS22530 ABIE40_RS22535: ABIE40_RS22535 - SDR family oxidoreductase, at 643,404 to 644,138 _RS22535 ABIE40_RS22540: ABIE40_RS22540 - AraC family transcriptional regulator, at 644,175 to 645,050 _RS22540 ABIE40_RS22545: ABIE40_RS22545 - alpha-glucosidase/alpha-galactosidase, at 645,264 to 646,730 _RS22545 Position (kb) 644 645 646Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 643.196 kb on + strand, within ABIE40_RS22530at 643.196 kb on + strand, within ABIE40_RS22530at 643.196 kb on + strand, within ABIE40_RS22530at 643.196 kb on + strand, within ABIE40_RS22530at 643.197 kb on - strand, within ABIE40_RS22530at 643.197 kb on - strand, within ABIE40_RS22530at 643.197 kb on - strand, within ABIE40_RS22530at 643.197 kb on - strand, within ABIE40_RS22530at 643.317 kb on - strandat 643.317 kb on - strandat 643.317 kb on - strandat 643.425 kb on - strandat 643.658 kb on + strand, within ABIE40_RS22535at 643.950 kb on + strand, within ABIE40_RS22535at 643.950 kb on + strand, within ABIE40_RS22535at 643.951 kb on - strand, within ABIE40_RS22535at 644.085 kb on + strandat 644.085 kb on + strandat 644.085 kb on + strandat 644.086 kb on - strandat 644.086 kb on - strandat 644.086 kb on - strandat 644.086 kb on - strandat 644.086 kb on - strandat 644.086 kb on - strandat 644.200 kb on + strandat 644.200 kb on + strandat 644.200 kb on + strandat 644.200 kb on + strandat 644.200 kb on + strandat 644.200 kb on + strandat 644.200 kb on + strandat 644.200 kb on + strandat 644.201 kb on - strandat 644.201 kb on - strandat 644.201 kb on - strandat 644.201 kb on - strandat 644.201 kb on - strandat 644.201 kb on - strandat 644.201 kb on - strandat 644.240 kb on - strandat 644.266 kb on + strand, within ABIE40_RS22540at 644.266 kb on + strand, within ABIE40_RS22540at 644.266 kb on + strand, within ABIE40_RS22540at 644.267 kb on - strand, within ABIE40_RS22540at 644.372 kb on - strand, within ABIE40_RS22540at 644.442 kb on - strand, within ABIE40_RS22540at 644.442 kb on - strand, within ABIE40_RS22540at 644.557 kb on + strand, within ABIE40_RS22540at 644.558 kb on - strand, within ABIE40_RS22540at 644.558 kb on - strand, within ABIE40_RS22540at 644.558 kb on - strand, within ABIE40_RS22540at 644.558 kb on - strand, within ABIE40_RS22540at 644.579 kb on - strand, within ABIE40_RS22540at 644.779 kb on + strand, within ABIE40_RS22540at 644.833 kb on + strand, within ABIE40_RS22540at 644.833 kb on + strand, within ABIE40_RS22540at 644.833 kb on + strand, within ABIE40_RS22540at 644.848 kb on + strand, within ABIE40_RS22540at 644.929 kb on + strand, within ABIE40_RS22540at 644.929 kb on + strand, within ABIE40_RS22540at 644.929 kb on + strand, within ABIE40_RS22540at 644.930 kb on - strand, within ABIE40_RS22540at 645.056 kb on + strandat 645.100 kb on - strandat 645.105 kb on + strandat 645.118 kb on + strandat 645.118 kb on + strandat 645.159 kb on + strandat 645.159 kb on + strandat 645.159 kb on + strandat 645.159 kb on + strandat 645.160 kb on - strandat 645.160 kb on - strandat 645.160 kb on - strandat 645.160 kb on - strandat 645.389 kb on + strandat 645.389 kb on + strandat 645.390 kb on - strandat 645.498 kb on + strand, within ABIE40_RS22545at 645.499 kb on - strand, within ABIE40_RS22545at 645.499 kb on - strand, within ABIE40_RS22545at 645.499 kb on - strand, within ABIE40_RS22545at 645.537 kb on + strand, within ABIE40_RS22545at 645.537 kb on + strand, within ABIE40_RS22545at 645.537 kb on + strand, within ABIE40_RS22545at 645.538 kb on - strand, within ABIE40_RS22545at 645.538 kb on - strand, within ABIE40_RS22545at 645.594 kb on - strand, within ABIE40_RS22545at 645.702 kb on + strand, within ABIE40_RS22545at 645.703 kb on - strand, within ABIE40_RS22545at 645.843 kb on + strand, within ABIE40_RS22545at 645.843 kb on + strand, within ABIE40_RS22545at 645.843 kb on + strand, within ABIE40_RS22545at 645.843 kb on + strand, within ABIE40_RS22545at 645.843 kb on + strand, within ABIE40_RS22545at 645.844 kb on - strand, within ABIE40_RS22545at 646.003 kb on - strand, within ABIE40_RS22545at 646.035 kb on + strand, within ABIE40_RS22545at 646.035 kb on + strand, within ABIE40_RS22545

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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643,196 + ABIE40_RS22530 0.78 +0.9
643,196 + ABIE40_RS22530 0.78 +0.4
643,196 + ABIE40_RS22530 0.78 -1.2
643,196 + ABIE40_RS22530 0.78 -3.3
643,197 - ABIE40_RS22530 0.78 -2.1
643,197 - ABIE40_RS22530 0.78 +1.3
643,197 - ABIE40_RS22530 0.78 -2.8
643,197 - ABIE40_RS22530 0.78 +0.3
643,317 - -1.6
643,317 - +1.6
643,317 - -0.2
643,425 - +0.0
643,658 + ABIE40_RS22535 0.35 +0.0
643,950 + ABIE40_RS22535 0.74 -0.7
643,950 + ABIE40_RS22535 0.74 -0.4
643,951 - ABIE40_RS22535 0.74 -1.9
644,085 + -0.7
644,085 + -0.9
644,085 + -2.5
644,086 - +0.8
644,086 - -1.0
644,086 - +0.6
644,086 - -0.3
644,086 - -0.8
644,086 - +0.2
644,200 + -2.7
644,200 + -2.7
644,200 + +1.0
644,200 + -1.2
644,200 + +1.6
644,200 + +0.5
644,200 + +1.9
644,200 + -1.7
644,201 - +0.8
644,201 - +0.7
644,201 - +1.9
644,201 - -0.3
644,201 - -1.7
644,201 - -0.1
644,201 - +0.3
644,240 - -0.3
644,266 + ABIE40_RS22540 0.10 -4.2
644,266 + ABIE40_RS22540 0.10 -2.4
644,266 + ABIE40_RS22540 0.10 -0.3
644,267 - ABIE40_RS22540 0.11 -3.1
644,372 - ABIE40_RS22540 0.22 -3.3
644,442 - ABIE40_RS22540 0.30 -1.8
644,442 - ABIE40_RS22540 0.30 -0.1
644,557 + ABIE40_RS22540 0.44 -2.5
644,558 - ABIE40_RS22540 0.44 -2.3
644,558 - ABIE40_RS22540 0.44 -2.6
644,558 - ABIE40_RS22540 0.44 -2.7
644,558 - ABIE40_RS22540 0.44 -3.0
644,579 - ABIE40_RS22540 0.46 -1.5
644,779 + ABIE40_RS22540 0.69 -2.0
644,833 + ABIE40_RS22540 0.75 -2.3
644,833 + ABIE40_RS22540 0.75 -1.4
644,833 + ABIE40_RS22540 0.75 -2.3
644,848 + ABIE40_RS22540 0.77 -2.3
644,929 + ABIE40_RS22540 0.86 -2.8
644,929 + ABIE40_RS22540 0.86 -3.1
644,929 + ABIE40_RS22540 0.86 -4.2
644,930 - ABIE40_RS22540 0.86 -1.8
645,056 + -1.8
645,100 - -0.9
645,105 + -2.1
645,118 + -2.1
645,118 + -0.8
645,159 + -0.9
645,159 + -1.9
645,159 + +1.0
645,159 + -2.5
645,160 - -0.9
645,160 - -4.0
645,160 - -3.2
645,160 - +0.5
645,389 + +2.2
645,389 + -1.8
645,390 - -3.4
645,498 + ABIE40_RS22545 0.16 -4.2
645,499 - ABIE40_RS22545 0.16 -5.3
645,499 - ABIE40_RS22545 0.16 -1.3
645,499 - ABIE40_RS22545 0.16 -2.1
645,537 + ABIE40_RS22545 0.19 -1.9
645,537 + ABIE40_RS22545 0.19 -2.9
645,537 + ABIE40_RS22545 0.19 -3.9
645,538 - ABIE40_RS22545 0.19 -3.5
645,538 - ABIE40_RS22545 0.19 -3.0
645,594 - ABIE40_RS22545 0.22 -3.7
645,702 + ABIE40_RS22545 0.30 +0.2
645,703 - ABIE40_RS22545 0.30 -0.9
645,843 + ABIE40_RS22545 0.39 -3.2
645,843 + ABIE40_RS22545 0.39 -4.6
645,843 + ABIE40_RS22545 0.39 +0.0
645,843 + ABIE40_RS22545 0.39 -1.2
645,843 + ABIE40_RS22545 0.39 -1.7
645,844 - ABIE40_RS22545 0.40 -1.9
646,003 - ABIE40_RS22545 0.50 -4.1
646,035 + ABIE40_RS22545 0.53 -1.1
646,035 + ABIE40_RS22545 0.53 -2.9

Or see this region's nucleotide sequence