Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20480

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20470 and ABIE40_RS20475 are separated by 232 nucleotidesABIE40_RS20475 and ABIE40_RS20480 are separated by 4 nucleotidesABIE40_RS20480 and ABIE40_RS20485 overlap by 4 nucleotides ABIE40_RS20470: ABIE40_RS20470 - DUF2938 domain-containing protein, at 197,471 to 197,950 _RS20470 ABIE40_RS20475: ABIE40_RS20475 - GbsR/MarR family transcriptional regulator, at 198,183 to 198,755 _RS20475 ABIE40_RS20480: ABIE40_RS20480 - thiol reductant ABC exporter subunit CydD, at 198,760 to 200,463 _RS20480 ABIE40_RS20485: ABIE40_RS20485 - ATP-binding cassette domain-containing protein, at 200,460 to 202,151 _RS20485 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 197.764 kb on - strand, within ABIE40_RS20470at 197.764 kb on - strand, within ABIE40_RS20470at 197.817 kb on + strand, within ABIE40_RS20470at 197.817 kb on + strand, within ABIE40_RS20470at 197.817 kb on + strand, within ABIE40_RS20470at 197.818 kb on - strand, within ABIE40_RS20470at 197.818 kb on - strand, within ABIE40_RS20470at 197.818 kb on - strand, within ABIE40_RS20470at 197.818 kb on - strand, within ABIE40_RS20470at 197.818 kb on - strand, within ABIE40_RS20470at 197.942 kb on - strandat 197.986 kb on + strandat 197.987 kb on - strandat 198.023 kb on - strandat 198.132 kb on - strandat 198.133 kb on + strandat 198.134 kb on - strandat 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.352 kb on + strand, within ABIE40_RS20475at 198.353 kb on - strand, within ABIE40_RS20475at 198.353 kb on - strand, within ABIE40_RS20475at 198.561 kb on + strand, within ABIE40_RS20475at 198.561 kb on + strand, within ABIE40_RS20475at 198.561 kb on + strand, within ABIE40_RS20475at 198.561 kb on + strand, within ABIE40_RS20475at 198.562 kb on - strand, within ABIE40_RS20475at 198.562 kb on - strand, within ABIE40_RS20475at 198.618 kb on + strand, within ABIE40_RS20475at 198.618 kb on + strand, within ABIE40_RS20475at 198.618 kb on + strand, within ABIE40_RS20475at 198.619 kb on - strand, within ABIE40_RS20475at 198.619 kb on - strand, within ABIE40_RS20475at 198.619 kb on - strand, within ABIE40_RS20475at 198.628 kb on + strand, within ABIE40_RS20475at 198.661 kb on + strand, within ABIE40_RS20475at 198.662 kb on - strand, within ABIE40_RS20475at 198.664 kb on + strand, within ABIE40_RS20475at 198.665 kb on - strand, within ABIE40_RS20475at 198.665 kb on - strand, within ABIE40_RS20475at 198.686 kb on + strand, within ABIE40_RS20475at 198.686 kb on + strand, within ABIE40_RS20475at 198.686 kb on + strand, within ABIE40_RS20475at 198.687 kb on - strand, within ABIE40_RS20475at 198.753 kb on + strandat 198.753 kb on + strandat 198.753 kb on + strandat 198.759 kb on + strandat 198.777 kb on - strandat 198.900 kb on + strandat 198.985 kb on + strand, within ABIE40_RS20480at 199.005 kb on + strand, within ABIE40_RS20480at 199.189 kb on + strand, within ABIE40_RS20480at 199.189 kb on + strand, within ABIE40_RS20480at 199.190 kb on - strand, within ABIE40_RS20480at 199.190 kb on - strand, within ABIE40_RS20480at 199.190 kb on - strand, within ABIE40_RS20480at 199.582 kb on + strand, within ABIE40_RS20480at 199.582 kb on + strand, within ABIE40_RS20480at 199.582 kb on + strand, within ABIE40_RS20480at 199.583 kb on - strand, within ABIE40_RS20480at 199.583 kb on - strand, within ABIE40_RS20480at 199.583 kb on - strand, within ABIE40_RS20480at 199.583 kb on - strand, within ABIE40_RS20480at 199.914 kb on + strand, within ABIE40_RS20480at 199.914 kb on + strand, within ABIE40_RS20480at 199.914 kb on + strand, within ABIE40_RS20480at 199.914 kb on + strand, within ABIE40_RS20480at 199.915 kb on - strand, within ABIE40_RS20480at 199.915 kb on - strand, within ABIE40_RS20480at 199.915 kb on - strand, within ABIE40_RS20480at 199.915 kb on - strand, within ABIE40_RS20480at 200.076 kb on + strand, within ABIE40_RS20480at 200.077 kb on - strand, within ABIE40_RS20480at 200.077 kb on - strand, within ABIE40_RS20480at 200.077 kb on - strand, within ABIE40_RS20480at 200.077 kb on - strand, within ABIE40_RS20480at 200.124 kb on + strand, within ABIE40_RS20480at 200.180 kb on - strand, within ABIE40_RS20480at 200.676 kb on - strand, within ABIE40_RS20485at 200.880 kb on + strand, within ABIE40_RS20485at 200.880 kb on + strand, within ABIE40_RS20485at 200.880 kb on + strand, within ABIE40_RS20485at 201.015 kb on + strand, within ABIE40_RS20485at 201.015 kb on + strand, within ABIE40_RS20485at 201.174 kb on + strand, within ABIE40_RS20485at 201.174 kb on + strand, within ABIE40_RS20485at 201.174 kb on + strand, within ABIE40_RS20485at 201.174 kb on + strand, within ABIE40_RS20485at 201.175 kb on - strand, within ABIE40_RS20485at 201.175 kb on - strand, within ABIE40_RS20485at 201.175 kb on - strand, within ABIE40_RS20485at 201.175 kb on - strand, within ABIE40_RS20485at 201.175 kb on - strand, within ABIE40_RS20485at 201.175 kb on - strand, within ABIE40_RS20485at 201.175 kb on - strand, within ABIE40_RS20485at 201.175 kb on - strand, within ABIE40_RS20485at 201.175 kb on - strand, within ABIE40_RS20485at 201.175 kb on - strand, within ABIE40_RS20485at 201.176 kb on + strand, within ABIE40_RS20485at 201.176 kb on + strand, within ABIE40_RS20485at 201.176 kb on + strand, within ABIE40_RS20485at 201.176 kb on + strand, within ABIE40_RS20485at 201.176 kb on + strand, within ABIE40_RS20485at 201.176 kb on + strand, within ABIE40_RS20485at 201.177 kb on - strand, within ABIE40_RS20485at 201.177 kb on - strand, within ABIE40_RS20485at 201.177 kb on - strand, within ABIE40_RS20485at 201.177 kb on - strand, within ABIE40_RS20485at 201.177 kb on - strand, within ABIE40_RS20485at 201.177 kb on - strand, within ABIE40_RS20485at 201.177 kb on - strand, within ABIE40_RS20485

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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197,764 - ABIE40_RS20470 0.61 -1.4
197,764 - ABIE40_RS20470 0.61 +1.3
197,817 + ABIE40_RS20470 0.72 +1.1
197,817 + ABIE40_RS20470 0.72 +0.7
197,817 + ABIE40_RS20470 0.72 -1.4
197,818 - ABIE40_RS20470 0.72 -2.9
197,818 - ABIE40_RS20470 0.72 +0.1
197,818 - ABIE40_RS20470 0.72 +0.2
197,818 - ABIE40_RS20470 0.72 -1.8
197,818 - ABIE40_RS20470 0.72 +0.6
197,942 - -0.3
197,986 + -2.6
197,987 - -1.1
198,023 - -0.2
198,132 - -0.1
198,133 + +1.9
198,134 - -0.5
198,273 + ABIE40_RS20475 0.16 -0.2
198,273 + ABIE40_RS20475 0.16 +1.3
198,273 + ABIE40_RS20475 0.16 -3.1
198,273 + ABIE40_RS20475 0.16 +0.5
198,273 + ABIE40_RS20475 0.16 -1.0
198,273 + ABIE40_RS20475 0.16 -1.4
198,273 + ABIE40_RS20475 0.16 +0.8
198,285 + ABIE40_RS20475 0.18 -0.2
198,285 + ABIE40_RS20475 0.18 -0.7
198,285 + ABIE40_RS20475 0.18 +0.5
198,285 + ABIE40_RS20475 0.18 +2.8
198,285 + ABIE40_RS20475 0.18 -2.8
198,285 + ABIE40_RS20475 0.18 +1.7
198,285 + ABIE40_RS20475 0.18 -0.6
198,285 + ABIE40_RS20475 0.18 +0.0
198,286 - ABIE40_RS20475 0.18 +1.1
198,286 - ABIE40_RS20475 0.18 +0.3
198,286 - ABIE40_RS20475 0.18 -1.6
198,286 - ABIE40_RS20475 0.18 +2.5
198,286 - ABIE40_RS20475 0.18 +2.5
198,286 - ABIE40_RS20475 0.18 +1.9
198,352 + ABIE40_RS20475 0.29 +0.6
198,353 - ABIE40_RS20475 0.30 +2.4
198,353 - ABIE40_RS20475 0.30 -0.4
198,561 + ABIE40_RS20475 0.66 +0.2
198,561 + ABIE40_RS20475 0.66 +1.9
198,561 + ABIE40_RS20475 0.66 -2.2
198,561 + ABIE40_RS20475 0.66 -2.0
198,562 - ABIE40_RS20475 0.66 +1.7
198,562 - ABIE40_RS20475 0.66 -0.6
198,618 + ABIE40_RS20475 0.76 +0.6
198,618 + ABIE40_RS20475 0.76 +0.2
198,618 + ABIE40_RS20475 0.76 -0.5
198,619 - ABIE40_RS20475 0.76 -2.1
198,619 - ABIE40_RS20475 0.76 +0.5
198,619 - ABIE40_RS20475 0.76 -0.3
198,628 + ABIE40_RS20475 0.78 -0.5
198,661 + ABIE40_RS20475 0.83 -0.5
198,662 - ABIE40_RS20475 0.84 -0.8
198,664 + ABIE40_RS20475 0.84 -1.3
198,665 - ABIE40_RS20475 0.84 +0.9
198,665 - ABIE40_RS20475 0.84 -2.7
198,686 + ABIE40_RS20475 0.88 +0.9
198,686 + ABIE40_RS20475 0.88 -0.0
198,686 + ABIE40_RS20475 0.88 -0.8
198,687 - ABIE40_RS20475 0.88 -0.1
198,753 + +2.0
198,753 + -0.6
198,753 + +0.7
198,759 + +0.3
198,777 - +0.8
198,900 + +1.3
198,985 + ABIE40_RS20480 0.13 -0.7
199,005 + ABIE40_RS20480 0.14 +0.5
199,189 + ABIE40_RS20480 0.25 -1.0
199,189 + ABIE40_RS20480 0.25 +1.8
199,190 - ABIE40_RS20480 0.25 +0.4
199,190 - ABIE40_RS20480 0.25 +0.3
199,190 - ABIE40_RS20480 0.25 +1.9
199,582 + ABIE40_RS20480 0.48 +1.0
199,582 + ABIE40_RS20480 0.48 -1.1
199,582 + ABIE40_RS20480 0.48 -2.5
199,583 - ABIE40_RS20480 0.48 -0.3
199,583 - ABIE40_RS20480 0.48 +0.7
199,583 - ABIE40_RS20480 0.48 +0.0
199,583 - ABIE40_RS20480 0.48 -2.9
199,914 + ABIE40_RS20480 0.68 -1.5
199,914 + ABIE40_RS20480 0.68 +0.6
199,914 + ABIE40_RS20480 0.68 +1.5
199,914 + ABIE40_RS20480 0.68 +1.1
199,915 - ABIE40_RS20480 0.68 +2.2
199,915 - ABIE40_RS20480 0.68 -2.2
199,915 - ABIE40_RS20480 0.68 +1.2
199,915 - ABIE40_RS20480 0.68 +0.5
200,076 + ABIE40_RS20480 0.77 -2.1
200,077 - ABIE40_RS20480 0.77 +0.5
200,077 - ABIE40_RS20480 0.77 -0.3
200,077 - ABIE40_RS20480 0.77 +0.8
200,077 - ABIE40_RS20480 0.77 -0.2
200,124 + ABIE40_RS20480 0.80 +1.2
200,180 - ABIE40_RS20480 0.83 +0.2
200,676 - ABIE40_RS20485 0.13 -0.7
200,880 + ABIE40_RS20485 0.25 -2.7
200,880 + ABIE40_RS20485 0.25 +1.1
200,880 + ABIE40_RS20485 0.25 -1.3
201,015 + ABIE40_RS20485 0.33 -2.6
201,015 + ABIE40_RS20485 0.33 -0.5
201,174 + ABIE40_RS20485 0.42 +0.2
201,174 + ABIE40_RS20485 0.42 -1.1
201,174 + ABIE40_RS20485 0.42 +1.6
201,174 + ABIE40_RS20485 0.42 +0.9
201,175 - ABIE40_RS20485 0.42 +2.3
201,175 - ABIE40_RS20485 0.42 +1.2
201,175 - ABIE40_RS20485 0.42 -0.3
201,175 - ABIE40_RS20485 0.42 +2.4
201,175 - ABIE40_RS20485 0.42 +0.2
201,175 - ABIE40_RS20485 0.42 +0.1
201,175 - ABIE40_RS20485 0.42 +0.4
201,175 - ABIE40_RS20485 0.42 -0.8
201,175 - ABIE40_RS20485 0.42 -0.7
201,175 - ABIE40_RS20485 0.42 +0.4
201,176 + ABIE40_RS20485 0.42 -0.2
201,176 + ABIE40_RS20485 0.42 -1.6
201,176 + ABIE40_RS20485 0.42 -0.9
201,176 + ABIE40_RS20485 0.42 +1.7
201,176 + ABIE40_RS20485 0.42 +0.7
201,176 + ABIE40_RS20485 0.42 -0.3
201,177 - ABIE40_RS20485 0.42 +0.2
201,177 - ABIE40_RS20485 0.42 -0.6
201,177 - ABIE40_RS20485 0.42 +0.5
201,177 - ABIE40_RS20485 0.42 -1.9
201,177 - ABIE40_RS20485 0.42 +1.9
201,177 - ABIE40_RS20485 0.42 -0.0
201,177 - ABIE40_RS20485 0.42 +3.3

Or see this region's nucleotide sequence