Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20035 and ABIE40_RS20040 are separated by 61 nucleotides ABIE40_RS20040 and ABIE40_RS20045 are separated by 2 nucleotides ABIE40_RS20045 and ABIE40_RS20050 are separated by 64 nucleotides
ABIE40_RS20035: ABIE40_RS20035 - ABC transporter ATP-binding protein, at 107,005 to 108,081
_RS20035
ABIE40_RS20040: ABIE40_RS20040 - carbohydrate ABC transporter permease, at 108,143 to 109,030
_RS20040
ABIE40_RS20045: ABIE40_RS20045 - sugar ABC transporter permease, at 109,033 to 109,941
_RS20045
ABIE40_RS20050: ABIE40_RS20050 - extracellular solute-binding protein, at 110,006 to 111,268
_RS20050
Position (kb) 108
109
110 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 107.263 kb on + strand, within ABIE40_RS20035 at 107.264 kb on - strand, within ABIE40_RS20035 at 107.409 kb on - strand, within ABIE40_RS20035 at 107.507 kb on + strand, within ABIE40_RS20035 at 107.507 kb on + strand, within ABIE40_RS20035 at 107.507 kb on + strand, within ABIE40_RS20035 at 107.685 kb on - strand, within ABIE40_RS20035 at 107.685 kb on - strand, within ABIE40_RS20035 at 107.780 kb on + strand, within ABIE40_RS20035 at 107.780 kb on + strand, within ABIE40_RS20035 at 107.780 kb on + strand, within ABIE40_RS20035 at 107.782 kb on + strand, within ABIE40_RS20035 at 107.784 kb on + strand, within ABIE40_RS20035 at 107.784 kb on + strand, within ABIE40_RS20035 at 107.784 kb on + strand, within ABIE40_RS20035 at 107.784 kb on + strand, within ABIE40_RS20035 at 107.784 kb on + strand, within ABIE40_RS20035 at 107.784 kb on + strand, within ABIE40_RS20035 at 107.785 kb on - strand, within ABIE40_RS20035 at 107.785 kb on - strand, within ABIE40_RS20035 at 107.785 kb on - strand, within ABIE40_RS20035 at 107.785 kb on - strand, within ABIE40_RS20035 at 107.806 kb on - strand, within ABIE40_RS20035 at 107.806 kb on - strand, within ABIE40_RS20035 at 107.813 kb on + strand, within ABIE40_RS20035 at 107.814 kb on - strand, within ABIE40_RS20035 at 108.026 kb on + strand at 108.026 kb on + strand at 108.027 kb on - strand at 108.027 kb on - strand at 108.069 kb on + strand at 108.181 kb on + strand at 108.182 kb on - strand at 108.215 kb on + strand at 108.216 kb on - strand at 108.216 kb on - strand at 108.391 kb on + strand, within ABIE40_RS20040 at 108.467 kb on + strand, within ABIE40_RS20040 at 108.467 kb on + strand, within ABIE40_RS20040 at 108.468 kb on - strand, within ABIE40_RS20040 at 108.468 kb on - strand, within ABIE40_RS20040 at 108.468 kb on - strand, within ABIE40_RS20040 at 108.507 kb on + strand, within ABIE40_RS20040 at 108.507 kb on + strand, within ABIE40_RS20040 at 108.508 kb on - strand, within ABIE40_RS20040 at 108.508 kb on - strand, within ABIE40_RS20040 at 108.508 kb on - strand, within ABIE40_RS20040 at 108.508 kb on - strand, within ABIE40_RS20040 at 108.508 kb on - strand, within ABIE40_RS20040 at 108.562 kb on + strand, within ABIE40_RS20040 at 108.563 kb on - strand, within ABIE40_RS20040 at 108.567 kb on + strand, within ABIE40_RS20040 at 108.568 kb on - strand, within ABIE40_RS20040 at 108.591 kb on + strand, within ABIE40_RS20040 at 108.591 kb on + strand, within ABIE40_RS20040 at 108.591 kb on + strand, within ABIE40_RS20040 at 108.591 kb on + strand, within ABIE40_RS20040 at 108.591 kb on + strand, within ABIE40_RS20040 at 108.592 kb on - strand, within ABIE40_RS20040 at 108.592 kb on - strand, within ABIE40_RS20040 at 108.592 kb on - strand, within ABIE40_RS20040 at 108.592 kb on - strand, within ABIE40_RS20040 at 108.594 kb on + strand, within ABIE40_RS20040 at 108.595 kb on - strand, within ABIE40_RS20040 at 108.595 kb on - strand, within ABIE40_RS20040 at 108.603 kb on + strand, within ABIE40_RS20040 at 108.604 kb on - strand, within ABIE40_RS20040 at 108.655 kb on + strand, within ABIE40_RS20040 at 108.693 kb on + strand, within ABIE40_RS20040 at 108.710 kb on + strand, within ABIE40_RS20040 at 108.711 kb on - strand, within ABIE40_RS20040 at 108.853 kb on - strand, within ABIE40_RS20040 at 109.004 kb on - strand at 109.031 kb on - strand at 109.031 kb on - strand at 109.034 kb on + strand at 109.034 kb on + strand at 109.035 kb on - strand at 109.035 kb on - strand at 109.035 kb on - strand at 109.147 kb on - strand, within ABIE40_RS20045 at 109.157 kb on + strand, within ABIE40_RS20045 at 109.157 kb on + strand, within ABIE40_RS20045 at 109.157 kb on + strand, within ABIE40_RS20045 at 109.158 kb on - strand, within ABIE40_RS20045 at 109.158 kb on - strand, within ABIE40_RS20045 at 109.160 kb on + strand, within ABIE40_RS20045 at 109.160 kb on + strand, within ABIE40_RS20045 at 109.160 kb on + strand, within ABIE40_RS20045 at 109.161 kb on - strand, within ABIE40_RS20045 at 109.161 kb on - strand, within ABIE40_RS20045 at 109.169 kb on + strand, within ABIE40_RS20045 at 109.170 kb on - strand, within ABIE40_RS20045 at 109.248 kb on + strand, within ABIE40_RS20045 at 109.248 kb on + strand, within ABIE40_RS20045 at 109.248 kb on + strand, within ABIE40_RS20045 at 109.249 kb on - strand, within ABIE40_RS20045 at 109.352 kb on + strand, within ABIE40_RS20045 at 109.415 kb on - strand, within ABIE40_RS20045 at 109.451 kb on + strand, within ABIE40_RS20045 at 109.451 kb on + strand, within ABIE40_RS20045 at 109.452 kb on - strand, within ABIE40_RS20045 at 109.589 kb on + strand, within ABIE40_RS20045 at 109.643 kb on + strand, within ABIE40_RS20045 at 109.643 kb on + strand, within ABIE40_RS20045 at 109.643 kb on + strand, within ABIE40_RS20045 at 109.644 kb on - strand, within ABIE40_RS20045 at 109.725 kb on - strand, within ABIE40_RS20045 at 109.725 kb on - strand, within ABIE40_RS20045 at 109.725 kb on - strand, within ABIE40_RS20045 at 109.725 kb on - strand, within ABIE40_RS20045 at 109.729 kb on - strand, within ABIE40_RS20045 at 109.765 kb on - strand, within ABIE40_RS20045 at 109.766 kb on + strand, within ABIE40_RS20045 at 109.766 kb on + strand, within ABIE40_RS20045 at 109.766 kb on + strand, within ABIE40_RS20045 at 109.766 kb on + strand, within ABIE40_RS20045 at 109.766 kb on + strand, within ABIE40_RS20045 at 109.766 kb on + strand, within ABIE40_RS20045 at 109.766 kb on + strand, within ABIE40_RS20045 at 109.766 kb on + strand, within ABIE40_RS20045 at 109.767 kb on - strand, within ABIE40_RS20045 at 109.767 kb on - strand, within ABIE40_RS20045 at 109.852 kb on + strand at 109.852 kb on + strand at 109.852 kb on + strand at 109.853 kb on - strand at 109.853 kb on - strand at 109.890 kb on - strand at 109.890 kb on - strand at 109.890 kb on - strand at 109.896 kb on + strand at 109.896 kb on + strand at 109.897 kb on - strand at 109.897 kb on - strand at 109.898 kb on + strand at 109.898 kb on + strand at 109.898 kb on + strand at 109.898 kb on + strand at 109.898 kb on + strand at 109.898 kb on + strand at 109.898 kb on + strand at 109.899 kb on - strand at 109.899 kb on - strand at 109.899 kb on - strand at 109.899 kb on - strand at 109.899 kb on - strand at 109.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 107,263 + ABIE40_RS20035 0.24 +2.1 107,264 - ABIE40_RS20035 0.24 -2.8 107,409 - ABIE40_RS20035 0.38 +1.2 107,507 + ABIE40_RS20035 0.47 +0.4 107,507 + ABIE40_RS20035 0.47 -0.4 107,507 + ABIE40_RS20035 0.47 +1.0 107,685 - ABIE40_RS20035 0.63 -0.0 107,685 - ABIE40_RS20035 0.63 +0.3 107,780 + ABIE40_RS20035 0.72 -1.8 107,780 + ABIE40_RS20035 0.72 -0.1 107,780 + ABIE40_RS20035 0.72 -1.1 107,782 + ABIE40_RS20035 0.72 -3.6 107,784 + ABIE40_RS20035 0.72 +0.9 107,784 + ABIE40_RS20035 0.72 +1.5 107,784 + ABIE40_RS20035 0.72 +0.7 107,784 + ABIE40_RS20035 0.72 -0.7 107,784 + ABIE40_RS20035 0.72 -0.7 107,784 + ABIE40_RS20035 0.72 -0.8 107,785 - ABIE40_RS20035 0.72 +2.2 107,785 - ABIE40_RS20035 0.72 -1.9 107,785 - ABIE40_RS20035 0.72 +0.5 107,785 - ABIE40_RS20035 0.72 +0.0 107,806 - ABIE40_RS20035 0.74 -1.0 107,806 - ABIE40_RS20035 0.74 -4.2 107,813 + ABIE40_RS20035 0.75 +0.5 107,814 - ABIE40_RS20035 0.75 +1.5 108,026 + +0.9 108,026 + +0.6 108,027 - -1.0 108,027 - -3.0 108,069 + +0.1 108,181 + -0.3 108,182 - +0.1 108,215 + -4.1 108,216 - -0.7 108,216 - -0.0 108,391 + ABIE40_RS20040 0.28 +0.9 108,467 + ABIE40_RS20040 0.36 +1.5 108,467 + ABIE40_RS20040 0.36 -0.2 108,468 - ABIE40_RS20040 0.37 +0.0 108,468 - ABIE40_RS20040 0.37 -1.0 108,468 - ABIE40_RS20040 0.37 -0.5 108,507 + ABIE40_RS20040 0.41 -1.9 108,507 + ABIE40_RS20040 0.41 +2.2 108,508 - ABIE40_RS20040 0.41 -2.5 108,508 - ABIE40_RS20040 0.41 +0.5 108,508 - ABIE40_RS20040 0.41 -1.1 108,508 - ABIE40_RS20040 0.41 -2.7 108,508 - ABIE40_RS20040 0.41 +0.6 108,562 + ABIE40_RS20040 0.47 -0.7 108,563 - ABIE40_RS20040 0.47 -0.9 108,567 + ABIE40_RS20040 0.48 -0.5 108,568 - ABIE40_RS20040 0.48 -0.6 108,591 + ABIE40_RS20040 0.50 -1.2 108,591 + ABIE40_RS20040 0.50 -0.1 108,591 + ABIE40_RS20040 0.50 +1.0 108,591 + ABIE40_RS20040 0.50 -0.3 108,591 + ABIE40_RS20040 0.50 -0.7 108,592 - ABIE40_RS20040 0.51 -0.0 108,592 - ABIE40_RS20040 0.51 -0.0 108,592 - ABIE40_RS20040 0.51 +1.3 108,592 - ABIE40_RS20040 0.51 -1.6 108,594 + ABIE40_RS20040 0.51 -1.5 108,595 - ABIE40_RS20040 0.51 -0.7 108,595 - ABIE40_RS20040 0.51 +1.6 108,603 + ABIE40_RS20040 0.52 +0.9 108,604 - ABIE40_RS20040 0.52 -0.5 108,655 + ABIE40_RS20040 0.58 -2.0 108,693 + ABIE40_RS20040 0.62 +0.7 108,710 + ABIE40_RS20040 0.64 -0.5 108,711 - ABIE40_RS20040 0.64 +0.0 108,853 - ABIE40_RS20040 0.80 -2.0 109,004 - -0.9 109,031 - +0.0 109,031 - +0.6 109,034 + +0.4 109,034 + -0.1 109,035 - +2.2 109,035 - -1.0 109,035 - +0.8 109,147 - ABIE40_RS20045 0.13 -2.1 109,157 + ABIE40_RS20045 0.14 -0.2 109,157 + ABIE40_RS20045 0.14 +0.3 109,157 + ABIE40_RS20045 0.14 -0.8 109,158 - ABIE40_RS20045 0.14 -1.0 109,158 - ABIE40_RS20045 0.14 +0.1 109,160 + ABIE40_RS20045 0.14 +0.1 109,160 + ABIE40_RS20045 0.14 -0.7 109,160 + ABIE40_RS20045 0.14 -1.7 109,161 - ABIE40_RS20045 0.14 +2.3 109,161 - ABIE40_RS20045 0.14 +0.4 109,169 + ABIE40_RS20045 0.15 +0.5 109,170 - ABIE40_RS20045 0.15 -0.9 109,248 + ABIE40_RS20045 0.24 +1.0 109,248 + ABIE40_RS20045 0.24 -0.5 109,248 + ABIE40_RS20045 0.24 -0.5 109,249 - ABIE40_RS20045 0.24 +0.0 109,352 + ABIE40_RS20045 0.35 -0.7 109,415 - ABIE40_RS20045 0.42 -1.3 109,451 + ABIE40_RS20045 0.46 +0.5 109,451 + ABIE40_RS20045 0.46 -0.7 109,452 - ABIE40_RS20045 0.46 +0.1 109,589 + ABIE40_RS20045 0.61 +0.8 109,643 + ABIE40_RS20045 0.67 -0.4 109,643 + ABIE40_RS20045 0.67 -0.7 109,643 + ABIE40_RS20045 0.67 -1.1 109,644 - ABIE40_RS20045 0.67 -0.9 109,725 - ABIE40_RS20045 0.76 -3.0 109,725 - ABIE40_RS20045 0.76 +0.2 109,725 - ABIE40_RS20045 0.76 -1.8 109,725 - ABIE40_RS20045 0.76 -1.3 109,729 - ABIE40_RS20045 0.77 -0.2 109,765 - ABIE40_RS20045 0.81 -1.3 109,766 + ABIE40_RS20045 0.81 +0.3 109,766 + ABIE40_RS20045 0.81 -1.5 109,766 + ABIE40_RS20045 0.81 +0.1 109,766 + ABIE40_RS20045 0.81 -1.4 109,766 + ABIE40_RS20045 0.81 -0.0 109,766 + ABIE40_RS20045 0.81 -1.1 109,766 + ABIE40_RS20045 0.81 -1.1 109,766 + ABIE40_RS20045 0.81 +0.4 109,767 - ABIE40_RS20045 0.81 +0.3 109,767 - ABIE40_RS20045 0.81 -2.8 109,852 + +0.9 109,852 + -0.7 109,852 + +0.1 109,853 - -2.3 109,853 - +0.9 109,890 - -0.6 109,890 - -3.7 109,890 - -0.5 109,896 + +0.8 109,896 + -0.0 109,897 - +0.2 109,897 - -1.1 109,898 + +0.3 109,898 + -2.5 109,898 + -1.6 109,898 + +2.0 109,898 + -1.0 109,898 + +1.9 109,898 + -2.7 109,899 - -0.5 109,899 - -3.7 109,899 - +0.1 109,899 - -2.2 109,899 - -0.5 109,964 - -2.8
Or see this region's nucleotide sequence