Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS19585 and ABIE40_RS19590 are separated by 231 nucleotides ABIE40_RS19590 and ABIE40_RS19595 are separated by 119 nucleotides ABIE40_RS19595 and ABIE40_RS19600 are separated by 28 nucleotides
ABIE40_RS19585: ABIE40_RS19585 - NAD(P)-dependent oxidoreductase, at 13,243 to 14,118
_RS19585
ABIE40_RS19590: ABIE40_RS19590 - GNAT family N-acetyltransferase, at 14,350 to 14,796
_RS19590
ABIE40_RS19595: ABIE40_RS19595 - hypothetical protein, at 14,916 to 15,134
_RS19595
ABIE40_RS19600: ABIE40_RS19600 - hypothetical protein, at 15,163 to 17,085
_RS19600
Position (kb) 14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 14.144 kb on + strand at 14.144 kb on + strand at 14.145 kb on - strand at 14.145 kb on - strand at 14.145 kb on - strand at 14.208 kb on + strand at 14.209 kb on - strand at 14.218 kb on + strand at 14.284 kb on - strand at 14.298 kb on + strand at 14.301 kb on + strand at 14.301 kb on + strand at 14.301 kb on + strand at 14.301 kb on + strand at 14.314 kb on + strand at 14.314 kb on + strand at 14.314 kb on + strand at 14.315 kb on - strand at 14.315 kb on - strand at 14.315 kb on - strand at 14.315 kb on - strand at 14.315 kb on - strand at 14.315 kb on - strand at 14.318 kb on + strand at 14.318 kb on + strand at 14.318 kb on + strand at 14.318 kb on + strand at 14.318 kb on + strand at 14.318 kb on + strand at 14.318 kb on + strand at 14.318 kb on + strand at 14.318 kb on + strand at 14.319 kb on - strand at 14.319 kb on - strand at 14.319 kb on - strand at 14.319 kb on - strand at 14.319 kb on - strand at 14.319 kb on - strand at 14.319 kb on - strand at 14.338 kb on + strand at 14.339 kb on - strand at 14.377 kb on - strand at 14.419 kb on + strand, within ABIE40_RS19590 at 14.420 kb on - strand, within ABIE40_RS19590 at 14.420 kb on - strand, within ABIE40_RS19590 at 14.421 kb on + strand, within ABIE40_RS19590 at 14.587 kb on + strand, within ABIE40_RS19590 at 14.587 kb on + strand, within ABIE40_RS19590 at 14.587 kb on + strand, within ABIE40_RS19590 at 14.587 kb on + strand, within ABIE40_RS19590 at 14.587 kb on + strand, within ABIE40_RS19590 at 14.587 kb on + strand, within ABIE40_RS19590 at 14.588 kb on - strand, within ABIE40_RS19590 at 14.588 kb on - strand, within ABIE40_RS19590 at 14.588 kb on - strand, within ABIE40_RS19590 at 14.588 kb on - strand, within ABIE40_RS19590 at 14.588 kb on - strand, within ABIE40_RS19590 at 14.588 kb on - strand, within ABIE40_RS19590 at 14.588 kb on - strand, within ABIE40_RS19590 at 14.731 kb on + strand, within ABIE40_RS19590 at 14.731 kb on + strand, within ABIE40_RS19590 at 14.732 kb on - strand, within ABIE40_RS19590 at 14.732 kb on - strand, within ABIE40_RS19590 at 14.732 kb on - strand, within ABIE40_RS19590 at 14.735 kb on - strand, within ABIE40_RS19590 at 14.735 kb on - strand, within ABIE40_RS19590 at 14.749 kb on + strand, within ABIE40_RS19590 at 14.750 kb on - strand, within ABIE40_RS19590 at 14.776 kb on + strand at 14.776 kb on + strand at 14.777 kb on - strand at 14.777 kb on - strand at 14.795 kb on - strand at 14.795 kb on - strand at 14.927 kb on - strand at 14.927 kb on - strand at 15.045 kb on + strand, within ABIE40_RS19595 at 15.128 kb on + strand at 15.128 kb on + strand at 15.128 kb on + strand at 15.129 kb on - strand at 15.129 kb on - strand at 15.164 kb on + strand at 15.164 kb on + strand at 15.165 kb on - strand at 15.205 kb on - strand at 15.205 kb on - strand at 15.205 kb on - strand at 15.205 kb on - strand at 15.243 kb on + strand at 15.243 kb on + strand at 15.243 kb on + strand at 15.244 kb on - strand at 15.375 kb on + strand, within ABIE40_RS19600 at 15.375 kb on + strand, within ABIE40_RS19600 at 15.375 kb on + strand, within ABIE40_RS19600 at 15.376 kb on - strand, within ABIE40_RS19600 at 15.376 kb on - strand, within ABIE40_RS19600 at 15.376 kb on - strand, within ABIE40_RS19600 at 15.376 kb on - strand, within ABIE40_RS19600 at 15.376 kb on - strand, within ABIE40_RS19600 at 15.377 kb on + strand, within ABIE40_RS19600 at 15.377 kb on + strand, within ABIE40_RS19600 at 15.377 kb on + strand, within ABIE40_RS19600 at 15.377 kb on + strand, within ABIE40_RS19600 at 15.377 kb on + strand, within ABIE40_RS19600 at 15.377 kb on + strand, within ABIE40_RS19600 at 15.378 kb on - strand, within ABIE40_RS19600 at 15.378 kb on - strand, within ABIE40_RS19600 at 15.378 kb on - strand, within ABIE40_RS19600 at 15.378 kb on - strand, within ABIE40_RS19600 at 15.378 kb on - strand, within ABIE40_RS19600 at 15.378 kb on - strand, within ABIE40_RS19600 at 15.410 kb on + strand, within ABIE40_RS19600 at 15.411 kb on - strand, within ABIE40_RS19600 at 15.411 kb on - strand, within ABIE40_RS19600 at 15.411 kb on - strand, within ABIE40_RS19600 at 15.411 kb on - strand, within ABIE40_RS19600 at 15.411 kb on - strand, within ABIE40_RS19600 at 15.437 kb on + strand, within ABIE40_RS19600 at 15.438 kb on - strand, within ABIE40_RS19600 at 15.438 kb on - strand, within ABIE40_RS19600 at 15.438 kb on - strand, within ABIE40_RS19600 at 15.522 kb on + strand, within ABIE40_RS19600 at 15.522 kb on + strand, within ABIE40_RS19600 at 15.522 kb on + strand, within ABIE40_RS19600 at 15.551 kb on + strand, within ABIE40_RS19600 at 15.552 kb on - strand, within ABIE40_RS19600 at 15.749 kb on + strand, within ABIE40_RS19600 at 15.750 kb on - strand, within ABIE40_RS19600 at 15.750 kb on - strand, within ABIE40_RS19600 at 15.750 kb on - strand, within ABIE40_RS19600 at 15.750 kb on - strand, within ABIE40_RS19600 at 15.750 kb on - strand, within ABIE40_RS19600 at 15.861 kb on - strand, within ABIE40_RS19600 at 15.861 kb on - strand, within ABIE40_RS19600 at 15.861 kb on - strand, within ABIE40_RS19600 at 15.878 kb on + strand, within ABIE40_RS19600 at 15.878 kb on + strand, within ABIE40_RS19600 at 15.878 kb on + strand, within ABIE40_RS19600 at 15.878 kb on + strand, within ABIE40_RS19600 at 15.878 kb on + strand, within ABIE40_RS19600 at 15.879 kb on - strand, within ABIE40_RS19600 at 15.879 kb on - strand, within ABIE40_RS19600 at 15.887 kb on + strand, within ABIE40_RS19600 at 15.911 kb on + strand, within ABIE40_RS19600 at 15.911 kb on + strand, within ABIE40_RS19600 at 15.912 kb on - strand, within ABIE40_RS19600 at 16.112 kb on + strand, within ABIE40_RS19600 at 16.112 kb on + strand, within ABIE40_RS19600 at 16.112 kb on + strand, within ABIE40_RS19600 at 16.112 kb on + strand, within ABIE40_RS19600 at 16.112 kb on + strand, within ABIE40_RS19600 at 16.112 kb on + strand, within ABIE40_RS19600 at 16.113 kb on - strand, within ABIE40_RS19600 at 16.113 kb on - strand, within ABIE40_RS19600 at 16.113 kb on - strand, within ABIE40_RS19600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 14,144 + -0.3 14,144 + +1.0 14,145 - -2.9 14,145 - -0.1 14,145 - -1.4 14,208 + -1.1 14,209 - -3.2 14,218 + -1.3 14,284 - +1.0 14,298 + -0.9 14,301 + +0.2 14,301 + -1.9 14,301 + +1.6 14,301 + +0.3 14,314 + +0.9 14,314 + +0.9 14,314 + +0.5 14,315 - -0.1 14,315 - +0.1 14,315 - -2.4 14,315 - +0.2 14,315 - -1.3 14,315 - +0.3 14,318 + +0.0 14,318 + +1.3 14,318 + -2.5 14,318 + -1.7 14,318 + -0.7 14,318 + +0.3 14,318 + -1.0 14,318 + +0.5 14,318 + +0.7 14,319 - +0.4 14,319 - -0.7 14,319 - -3.1 14,319 - -0.3 14,319 - +2.8 14,319 - -0.3 14,319 - -0.8 14,338 + -2.0 14,339 - +2.1 14,377 - +0.6 14,419 + ABIE40_RS19590 0.15 -0.7 14,420 - ABIE40_RS19590 0.16 +1.5 14,420 - ABIE40_RS19590 0.16 -2.7 14,421 + ABIE40_RS19590 0.16 +0.1 14,587 + ABIE40_RS19590 0.53 -2.3 14,587 + ABIE40_RS19590 0.53 -0.3 14,587 + ABIE40_RS19590 0.53 +0.3 14,587 + ABIE40_RS19590 0.53 +0.5 14,587 + ABIE40_RS19590 0.53 -0.2 14,587 + ABIE40_RS19590 0.53 -4.7 14,588 - ABIE40_RS19590 0.53 -0.9 14,588 - ABIE40_RS19590 0.53 +0.8 14,588 - ABIE40_RS19590 0.53 +1.5 14,588 - ABIE40_RS19590 0.53 -2.7 14,588 - ABIE40_RS19590 0.53 -0.3 14,588 - ABIE40_RS19590 0.53 -1.3 14,588 - ABIE40_RS19590 0.53 +0.3 14,731 + ABIE40_RS19590 0.85 -0.2 14,731 + ABIE40_RS19590 0.85 -0.9 14,732 - ABIE40_RS19590 0.85 +3.5 14,732 - ABIE40_RS19590 0.85 -0.4 14,732 - ABIE40_RS19590 0.85 -2.1 14,735 - ABIE40_RS19590 0.86 +0.0 14,735 - ABIE40_RS19590 0.86 -2.0 14,749 + ABIE40_RS19590 0.89 +0.1 14,750 - ABIE40_RS19590 0.89 -1.1 14,776 + +1.3 14,776 + +0.2 14,777 - +1.2 14,777 - +1.6 14,795 - -0.3 14,795 - -2.5 14,927 - +0.4 14,927 - -0.5 15,045 + ABIE40_RS19595 0.59 -0.7 15,128 + -1.0 15,128 + -1.0 15,128 + -3.1 15,129 - +0.3 15,129 - -3.2 15,164 + +1.6 15,164 + +0.4 15,165 - -2.9 15,205 - +1.6 15,205 - +2.4 15,205 - -1.1 15,205 - +0.9 15,243 + -2.4 15,243 + +1.1 15,243 + -0.3 15,244 - -2.1 15,375 + ABIE40_RS19600 0.11 +0.3 15,375 + ABIE40_RS19600 0.11 +0.1 15,375 + ABIE40_RS19600 0.11 -0.5 15,376 - ABIE40_RS19600 0.11 -2.7 15,376 - ABIE40_RS19600 0.11 -0.0 15,376 - ABIE40_RS19600 0.11 +1.2 15,376 - ABIE40_RS19600 0.11 +0.6 15,376 - ABIE40_RS19600 0.11 +0.7 15,377 + ABIE40_RS19600 0.11 +0.5 15,377 + ABIE40_RS19600 0.11 -1.6 15,377 + ABIE40_RS19600 0.11 +0.8 15,377 + ABIE40_RS19600 0.11 +2.0 15,377 + ABIE40_RS19600 0.11 -0.4 15,377 + ABIE40_RS19600 0.11 -0.3 15,378 - ABIE40_RS19600 0.11 -2.8 15,378 - ABIE40_RS19600 0.11 +1.0 15,378 - ABIE40_RS19600 0.11 +2.5 15,378 - ABIE40_RS19600 0.11 +1.8 15,378 - ABIE40_RS19600 0.11 +0.5 15,378 - ABIE40_RS19600 0.11 +0.2 15,410 + ABIE40_RS19600 0.13 -1.7 15,411 - ABIE40_RS19600 0.13 -0.9 15,411 - ABIE40_RS19600 0.13 +0.4 15,411 - ABIE40_RS19600 0.13 +0.2 15,411 - ABIE40_RS19600 0.13 -0.1 15,411 - ABIE40_RS19600 0.13 -2.1 15,437 + ABIE40_RS19600 0.14 +0.3 15,438 - ABIE40_RS19600 0.14 -0.5 15,438 - ABIE40_RS19600 0.14 +1.8 15,438 - ABIE40_RS19600 0.14 -1.9 15,522 + ABIE40_RS19600 0.19 +0.6 15,522 + ABIE40_RS19600 0.19 +0.2 15,522 + ABIE40_RS19600 0.19 +1.2 15,551 + ABIE40_RS19600 0.20 +1.0 15,552 - ABIE40_RS19600 0.20 -0.0 15,749 + ABIE40_RS19600 0.30 +0.5 15,750 - ABIE40_RS19600 0.31 +0.3 15,750 - ABIE40_RS19600 0.31 +0.9 15,750 - ABIE40_RS19600 0.31 -1.4 15,750 - ABIE40_RS19600 0.31 -1.2 15,750 - ABIE40_RS19600 0.31 +0.7 15,861 - ABIE40_RS19600 0.36 -0.7 15,861 - ABIE40_RS19600 0.36 +0.4 15,861 - ABIE40_RS19600 0.36 -1.9 15,878 + ABIE40_RS19600 0.37 +0.7 15,878 + ABIE40_RS19600 0.37 +2.7 15,878 + ABIE40_RS19600 0.37 +0.8 15,878 + ABIE40_RS19600 0.37 -2.7 15,878 + ABIE40_RS19600 0.37 +0.3 15,879 - ABIE40_RS19600 0.37 -1.0 15,879 - ABIE40_RS19600 0.37 +1.1 15,887 + ABIE40_RS19600 0.38 -0.0 15,911 + ABIE40_RS19600 0.39 -1.5 15,911 + ABIE40_RS19600 0.39 -0.1 15,912 - ABIE40_RS19600 0.39 -0.9 16,112 + ABIE40_RS19600 0.49 +0.1 16,112 + ABIE40_RS19600 0.49 +0.9 16,112 + ABIE40_RS19600 0.49 +0.5 16,112 + ABIE40_RS19600 0.49 -0.7 16,112 + ABIE40_RS19600 0.49 +1.1 16,112 + ABIE40_RS19600 0.49 -0.5 16,113 - ABIE40_RS19600 0.49 +0.0 16,113 - ABIE40_RS19600 0.49 -0.5 16,113 - ABIE40_RS19600 0.49 +0.2
Or see this region's nucleotide sequence