Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS18590

Experiment: L-Citrulline (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Citrulline (C)
3,716,516	-		ABIE40_RS18585	0.18	-1.3
3,716,516	-		ABIE40_RS18585	0.18	-2.2
3,716,545	-		ABIE40_RS18585	0.21	-1.1
3,716,627	+		ABIE40_RS18585	0.29	+0.0
3,716,627	+		ABIE40_RS18585	0.29	+0.7
3,716,628	-		ABIE40_RS18585	0.29	-0.4
3,716,628	-		ABIE40_RS18585	0.29	-2.4
3,716,636	-		ABIE40_RS18585	0.30	-0.8
3,716,636	-		ABIE40_RS18585	0.30	+0.0
3,716,672	-		ABIE40_RS18585	0.34	-1.5
3,716,755	+		ABIE40_RS18585	0.42	-3.4
3,716,756	-		ABIE40_RS18585	0.42	-4.3
3,716,756	-		ABIE40_RS18585	0.42	-3.6
3,716,756	-		ABIE40_RS18585	0.42	-1.5
3,716,818	+		ABIE40_RS18585	0.48	-1.3
3,716,819	-		ABIE40_RS18585	0.48	-1.7
3,716,819	-		ABIE40_RS18585	0.48	-0.3
3,716,870	-		ABIE40_RS18585	0.53	-3.7
3,717,050	+		ABIE40_RS18585	0.71	-2.5
3,717,051	-		ABIE40_RS18585	0.71	-0.3
3,717,051	-		ABIE40_RS18585	0.71	-2.7
3,717,051	-		ABIE40_RS18585	0.71	-1.7
3,717,051	-		ABIE40_RS18585	0.71	-1.4
3,717,051	-		ABIE40_RS18585	0.71	+0.8
3,717,076	+		ABIE40_RS18585	0.73	-2.0
3,717,077	-		ABIE40_RS18585	0.73	-0.6
3,717,077	-		ABIE40_RS18585	0.73	-1.7
3,717,096	-		ABIE40_RS18585	0.75	-1.6
3,717,148	+		ABIE40_RS18585	0.80	-1.9
3,717,157	+		ABIE40_RS18585	0.81	-2.5
3,717,158	-		ABIE40_RS18585	0.81	+0.7
3,717,158	-		ABIE40_RS18585	0.81	-2.7
3,717,162	-		ABIE40_RS18585	0.82	-2.0
3,717,166	+		ABIE40_RS18585	0.82	-1.7
3,717,352	+				-3.7
3,717,352	+				-0.9
3,717,352	+				-3.9
3,717,352	+				-0.4
3,717,353	-				-3.7
3,717,353	-				-0.5
3,717,353	-				+0.6
3,717,353	-				-0.1
3,717,482	+				+0.6
3,717,483	-				-0.1
3,717,483	-				+0.9
3,717,520	+				-2.3
3,717,521	-				-2.8
3,717,625	+		ABIE40_RS18590	0.15	-2.6
3,717,625	+		ABIE40_RS18590	0.15	-3.1
3,717,625	+		ABIE40_RS18590	0.15	-2.6
3,717,625	+		ABIE40_RS18590	0.15	-1.7
3,717,626	-		ABIE40_RS18590	0.15	-1.7
3,717,626	-		ABIE40_RS18590	0.15	-5.4
3,717,626	-		ABIE40_RS18590	0.15	-2.7
3,717,629	+		ABIE40_RS18590	0.15	-4.7
3,717,629	+		ABIE40_RS18590	0.15	-1.9
3,717,629	+		ABIE40_RS18590	0.15	-3.2
3,717,629	+		ABIE40_RS18590	0.15	-4.1
3,717,629	+		ABIE40_RS18590	0.15	-2.1
3,717,630	-		ABIE40_RS18590	0.15	-1.3
3,717,630	-		ABIE40_RS18590	0.15	-3.5
3,717,630	-		ABIE40_RS18590	0.15	-5.2
3,717,630	-		ABIE40_RS18590	0.15	-2.5
3,717,630	-		ABIE40_RS18590	0.15	-1.7
3,717,673	+		ABIE40_RS18590	0.20	-2.3
3,717,700	+		ABIE40_RS18590	0.23	-3.6
3,717,700	+		ABIE40_RS18590	0.23	-4.0
3,717,701	-		ABIE40_RS18590	0.23	-2.3
3,717,701	-		ABIE40_RS18590	0.23	-5.3
3,717,719	+		ABIE40_RS18590	0.25	-3.6
3,717,719	+		ABIE40_RS18590	0.25	-2.7
3,717,719	+		ABIE40_RS18590	0.25	+0.6
3,717,719	+		ABIE40_RS18590	0.25	-4.0
3,717,719	+		ABIE40_RS18590	0.25	-4.0
3,717,720	-		ABIE40_RS18590	0.25	-3.1
3,717,720	-		ABIE40_RS18590	0.25	-3.8
3,717,720	-		ABIE40_RS18590	0.25	-5.6
3,717,721	+		ABIE40_RS18590	0.25	-3.7
3,717,721	+		ABIE40_RS18590	0.25	+0.6
3,717,722	-		ABIE40_RS18590	0.25	-3.5
3,717,722	-		ABIE40_RS18590	0.25	-4.8
3,717,722	-		ABIE40_RS18590	0.25	-5.3
3,717,722	-		ABIE40_RS18590	0.25	-4.5
3,717,911	-		ABIE40_RS18590	0.46	-1.9
3,717,964	+		ABIE40_RS18590	0.51	-2.7
3,717,964	+		ABIE40_RS18590	0.51	-1.6
3,717,964	+		ABIE40_RS18590	0.51	-0.8
3,717,964	+		ABIE40_RS18590	0.51	-0.1
3,717,965	-		ABIE40_RS18590	0.52	-4.6
3,717,965	-		ABIE40_RS18590	0.52	-4.8
3,718,054	+		ABIE40_RS18590	0.61	-4.6
3,718,054	+		ABIE40_RS18590	0.61	-3.2
3,718,054	+		ABIE40_RS18590	0.61	-2.9
3,718,055	-		ABIE40_RS18590	0.61	-3.4
3,718,055	-		ABIE40_RS18590	0.61	-3.5
3,718,055	-		ABIE40_RS18590	0.61	-3.5
3,718,070	-		ABIE40_RS18590	0.63	-2.1
3,718,147	+		ABIE40_RS18590	0.71	-1.5
3,718,147	+		ABIE40_RS18590	0.71	-0.1
3,718,147	+		ABIE40_RS18590	0.71	-3.7
3,718,148	-		ABIE40_RS18590	0.71	-4.5
3,718,148	-		ABIE40_RS18590	0.71	-3.0
3,718,148	-		ABIE40_RS18590	0.71	-2.2
3,718,447	+				-1.6
3,718,448	-				+1.8
3,718,503	+				-3.8
3,718,504	-				-0.6
3,718,504	-				-1.8
3,718,504	-				+0.2
3,718,507	+				-6.4
3,718,508	-				-2.4
3,718,508	-				+2.2
3,718,508	-				-0.7
3,718,551	+				-0.1
3,718,551	+				-4.8
3,718,551	+				-2.3
3,718,552	-				-0.3
3,718,552	-				-0.7
3,718,552	-				+0.9
3,718,552	-				-0.1
3,718,552	-				+0.0
3,718,555	+				-4.2
3,718,556	-				-0.3
3,718,613	-				-0.7
3,718,624	+				+0.4
3,718,634	+				-0.9
3,718,634	+				-1.4
3,718,661	+				-0.3
3,718,661	+				-2.6
3,718,662	-				-0.8
3,718,669	+				-0.2
3,718,669	+				+0.5
3,718,670	-				+0.7
3,718,670	-				-0.4
3,718,670	-				+0.2
3,718,687	+				-0.1
3,718,687	+				+0.2
3,718,755	+				+0.2
3,718,781	+				+0.4
3,718,781	+				-1.5
3,718,782	-				+1.5
3,718,875	+				-0.9
3,718,876	-				-0.7
3,718,914	+		ABIE40_RS18595	0.12	-0.6
3,718,914	+		ABIE40_RS18595	0.12	-2.0
3,718,914	+		ABIE40_RS18595	0.12	+0.5
3,719,040	+		ABIE40_RS18595	0.18	-3.1
3,719,041	-		ABIE40_RS18595	0.19	+0.5
3,719,181	-		ABIE40_RS18595	0.26	+0.2
3,719,181	-		ABIE40_RS18595	0.26	-2.0
3,719,286	+		ABIE40_RS18595	0.32	-1.5
3,719,286	+		ABIE40_RS18595	0.32	-0.1
3,719,286	+		ABIE40_RS18595	0.32	+0.5
3,719,286	+		ABIE40_RS18595	0.32	-0.6
3,719,286	+		ABIE40_RS18595	0.32	-0.1
3,719,287	-		ABIE40_RS18595	0.32	-0.0
3,719,287	-		ABIE40_RS18595	0.32	-0.1
3,719,287	-		ABIE40_RS18595	0.32	+1.2
3,719,287	-		ABIE40_RS18595	0.32	-2.1
3,719,307	+		ABIE40_RS18595	0.33	+0.2
3,719,308	-		ABIE40_RS18595	0.33	-0.0
3,719,329	+		ABIE40_RS18595	0.34	+0.2
3,719,331	+		ABIE40_RS18595	0.34	-0.6
3,719,331	+		ABIE40_RS18595	0.34	+2.2
3,719,331	+		ABIE40_RS18595	0.34	+1.8
3,719,331	+		ABIE40_RS18595	0.34	+0.1
3,719,331	+		ABIE40_RS18595	0.34	+2.2
3,719,332	-		ABIE40_RS18595	0.34	-0.1
3,719,332	-		ABIE40_RS18595	0.34	-0.5
3,719,332	-		ABIE40_RS18595	0.34	-0.1
3,719,332	-		ABIE40_RS18595	0.34	+0.3