Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS16750

Experiment: L-Citrulline (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Citrulline (C)
3,335,636	+		ABIE40_RS16745	0.70	+1.0
3,335,647	+		ABIE40_RS16745	0.71	-0.4
3,335,647	+		ABIE40_RS16745	0.71	+1.0
3,335,647	+		ABIE40_RS16745	0.71	-1.4
3,335,647	+		ABIE40_RS16745	0.71	-1.6
3,335,647	+		ABIE40_RS16745	0.71	-0.1
3,335,647	+		ABIE40_RS16745	0.71	+0.9
3,335,648	-		ABIE40_RS16745	0.71	+0.2
3,335,648	-		ABIE40_RS16745	0.71	-2.4
3,335,648	-		ABIE40_RS16745	0.71	-2.9
3,335,648	-		ABIE40_RS16745	0.71	-0.5
3,335,648	-		ABIE40_RS16745	0.71	-1.6
3,335,648	-		ABIE40_RS16745	0.71	-0.5
3,335,648	-		ABIE40_RS16745	0.71	-2.4
3,335,648	-		ABIE40_RS16745	0.71	-1.1
3,335,648	-		ABIE40_RS16745	0.71	+0.4
3,335,648	-		ABIE40_RS16745	0.71	-1.1
3,335,648	-		ABIE40_RS16745	0.71	-0.1
3,335,648	-		ABIE40_RS16745	0.71	-1.0
3,335,648	-		ABIE40_RS16745	0.71	-1.1
3,335,699	+		ABIE40_RS16745	0.73	+0.2
3,335,699	+		ABIE40_RS16745	0.73	-0.1
3,335,699	+		ABIE40_RS16745	0.73	-2.4
3,335,700	-		ABIE40_RS16745	0.73	+0.9
3,335,700	-		ABIE40_RS16745	0.73	-2.1
3,335,700	-		ABIE40_RS16745	0.73	+0.3
3,335,700	-		ABIE40_RS16745	0.73	-0.6
3,335,700	-		ABIE40_RS16745	0.73	+0.3
3,335,705	-		ABIE40_RS16745	0.73	-2.5
3,335,705	-		ABIE40_RS16745	0.73	-1.7
3,335,911	+		ABIE40_RS16745	0.83	-0.7
3,335,911	+		ABIE40_RS16745	0.83	-2.4
3,335,989	+		ABIE40_RS16745	0.86	+0.7
3,335,990	-		ABIE40_RS16745	0.86	-3.6
3,336,025	+		ABIE40_RS16745	0.88	-0.8
3,336,026	-		ABIE40_RS16745	0.88	-1.7
3,336,026	-		ABIE40_RS16745	0.88	-3.7
3,336,058	+		ABIE40_RS16745	0.89	-2.4
3,336,059	-		ABIE40_RS16745	0.89	+0.4
3,336,059	-		ABIE40_RS16745	0.89	+0.5
3,336,252	+				-0.6
3,336,287	+				+0.1
3,336,287	+				-1.2
3,336,287	+				-1.0
3,336,287	+				-3.2
3,336,288	-				+0.6
3,336,288	-				-3.1
3,336,288	-				-1.4
3,336,375	-				+2.5
3,336,375	-				+0.0
3,336,399	+				+0.4
3,336,403	+				-1.3
3,336,404	-				-1.9
3,336,459	-				-2.8
3,336,689	-				+1.9
3,336,705	+				-1.1
3,336,705	+				-1.0
3,336,706	-				-0.4
3,336,706	-				-1.6
3,336,706	-				-1.9
3,336,706	-				-0.3
3,336,706	-				-0.3
3,336,706	-				+1.5
3,336,738	+				-1.3
3,336,738	+				-0.7
3,336,738	+				+0.1
3,336,739	-				-0.3
3,336,739	-				-1.1
3,336,846	+		ABIE40_RS16750	0.17	-0.2
3,336,921	+		ABIE40_RS16750	0.22	-0.7
3,336,921	+		ABIE40_RS16750	0.22	+0.6
3,336,921	+		ABIE40_RS16750	0.22	+0.9
3,336,921	+		ABIE40_RS16750	0.22	+0.7
3,336,922	-		ABIE40_RS16750	0.22	+0.8
3,336,922	-		ABIE40_RS16750	0.22	+0.9
3,336,922	-		ABIE40_RS16750	0.22	-2.5
3,336,922	-		ABIE40_RS16750	0.22	+2.9
3,336,922	-		ABIE40_RS16750	0.22	+0.4
3,336,922	-		ABIE40_RS16750	0.22	+0.5
3,336,948	+		ABIE40_RS16750	0.24	-0.5
3,336,949	-		ABIE40_RS16750	0.24	-2.1
3,336,984	+		ABIE40_RS16750	0.27	-1.2
3,336,985	-		ABIE40_RS16750	0.27	-1.3
3,337,060	+		ABIE40_RS16750	0.32	+0.3
3,337,061	-		ABIE40_RS16750	0.33	-0.4
3,337,061	-		ABIE40_RS16750	0.33	+0.8
3,337,092	+		ABIE40_RS16750	0.35	-0.7
3,337,092	+		ABIE40_RS16750	0.35	-1.5
3,337,093	-		ABIE40_RS16750	0.35	-2.0
3,337,093	-		ABIE40_RS16750	0.35	+0.3
3,337,093	-		ABIE40_RS16750	0.35	+1.0
3,337,093	-		ABIE40_RS16750	0.35	+1.4
3,337,095	+		ABIE40_RS16750	0.35	+1.4
3,337,095	+		ABIE40_RS16750	0.35	+1.4
3,337,095	+		ABIE40_RS16750	0.35	-1.9
3,337,095	+		ABIE40_RS16750	0.35	-1.0
3,337,095	+		ABIE40_RS16750	0.35	-0.2
3,337,096	-		ABIE40_RS16750	0.35	+0.8
3,337,096	-		ABIE40_RS16750	0.35	-4.8
3,337,096	-		ABIE40_RS16750	0.35	-2.7
3,337,313	+		ABIE40_RS16750	0.51	+0.2
3,337,313	+		ABIE40_RS16750	0.51	+1.2
3,337,314	-		ABIE40_RS16750	0.51	+0.7
3,337,314	-		ABIE40_RS16750	0.51	-2.2
3,337,386	+		ABIE40_RS16750	0.56	+0.6
3,337,386	+		ABIE40_RS16750	0.56	+0.3
3,337,386	+		ABIE40_RS16750	0.56	+0.9
3,337,386	+		ABIE40_RS16750	0.56	+1.1
3,337,386	+		ABIE40_RS16750	0.56	+4.9
3,337,386	+		ABIE40_RS16750	0.56	-0.7
3,337,386	+		ABIE40_RS16750	0.56	+0.0
3,337,386	+		ABIE40_RS16750	0.56	+0.5
3,337,386	+		ABIE40_RS16750	0.56	-0.5
3,337,386	+		ABIE40_RS16750	0.56	+0.7
3,337,386	+		ABIE40_RS16750	0.56	-1.7
3,337,386	+		ABIE40_RS16750	0.56	-1.3
3,337,387	-		ABIE40_RS16750	0.56	-0.9
3,337,387	-		ABIE40_RS16750	0.56	-1.8
3,337,387	-		ABIE40_RS16750	0.56	-1.1
3,337,387	-		ABIE40_RS16750	0.56	+0.7
3,337,387	-		ABIE40_RS16750	0.56	-1.7
3,337,387	-		ABIE40_RS16750	0.56	-0.8
3,337,387	-		ABIE40_RS16750	0.56	-1.0
3,337,387	-		ABIE40_RS16750	0.56	+0.3
3,337,387	-		ABIE40_RS16750	0.56	-0.7
3,337,444	-		ABIE40_RS16750	0.60	-0.3
3,337,444	-		ABIE40_RS16750	0.60	+0.4
3,337,551	+		ABIE40_RS16750	0.68	+0.5
3,337,552	-		ABIE40_RS16750	0.68	+0.3
3,337,552	-		ABIE40_RS16750	0.68	+2.2
3,337,552	-		ABIE40_RS16750	0.68	-1.3
3,337,614	+		ABIE40_RS16750	0.73	-2.9
3,337,614	+		ABIE40_RS16750	0.73	-0.1
3,337,614	+		ABIE40_RS16750	0.73	-1.4
3,337,615	-		ABIE40_RS16750	0.73	+0.4
3,337,615	-		ABIE40_RS16750	0.73	+0.1
3,337,615	-		ABIE40_RS16750	0.73	+0.2
3,337,615	-		ABIE40_RS16750	0.73	+1.3
3,337,615	-		ABIE40_RS16750	0.73	+2.3
3,337,671	+		ABIE40_RS16750	0.77	+0.1
3,337,671	+		ABIE40_RS16750	0.77	+0.1
3,337,672	-		ABIE40_RS16750	0.77	+0.2
3,337,798	+		ABIE40_RS16750	0.86	+0.3
3,337,798	+		ABIE40_RS16750	0.86	+1.2
3,337,799	-		ABIE40_RS16750	0.86	+0.3
3,337,799	-		ABIE40_RS16750	0.86	-1.8
3,337,799	-		ABIE40_RS16750	0.86	-1.7
3,337,800	+		ABIE40_RS16750	0.86	-0.5
3,337,800	+		ABIE40_RS16750	0.86	-0.4
3,337,801	-		ABIE40_RS16750	0.86	+0.7
3,337,803	-		ABIE40_RS16750	0.87	-1.3
3,337,836	+		ABIE40_RS16750	0.89	-2.6
3,337,836	+		ABIE40_RS16750	0.89	-0.5
3,337,836	+		ABIE40_RS16750	0.89	-1.3
3,337,837	-		ABIE40_RS16750	0.89	-2.1
3,337,837	-		ABIE40_RS16750	0.89	-5.8
3,337,837	-		ABIE40_RS16750	0.89	-0.7
3,337,837	-		ABIE40_RS16750	0.89	-0.1
3,338,004	-				+0.4
3,338,004	-				+0.3
3,338,004	-				+0.7
3,338,049	-				-1.3
3,338,049	-				-1.2
3,338,049	-				-1.1
3,338,069	+				-0.6
3,338,069	+				+0.3
3,338,200	+				-0.7
3,338,201	-				-0.4
3,338,201	-				+0.3
3,338,201	-				+0.3
3,338,291	-				-0.3
3,338,390	+		ABIE40_RS16755	0.15	-1.6
3,338,391	-		ABIE40_RS16755	0.15	-2.8
3,338,712	+		ABIE40_RS16755	0.35	-3.5
3,338,744	+		ABIE40_RS16755	0.37	+1.2
3,338,744	+		ABIE40_RS16755	0.37	+0.0
3,338,744	+		ABIE40_RS16755	0.37	+1.1
3,338,745	-		ABIE40_RS16755	0.37	-2.2
3,338,785	+		ABIE40_RS16755	0.40	-1.5
3,338,785	+		ABIE40_RS16755	0.40	-2.5
3,338,785	+		ABIE40_RS16755	0.40	+0.7
3,338,921	-		ABIE40_RS16755	0.48	-0.7