Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS09970 and ABIE40_RS09975 are separated by 2 nucleotides ABIE40_RS09975 and ABIE40_RS09980 are separated by 92 nucleotides ABIE40_RS09980 and ABIE40_RS09985 are separated by 94 nucleotides ABIE40_RS09985 and ABIE40_RS09990 are separated by 10 nucleotides
ABIE40_RS09970: ABIE40_RS09970 - flagellar basal body protein, at 1,919,322 to 1,919,597
_RS09970
ABIE40_RS09975: ABIE40_RS09975 - LysE family transporter, at 1,919,600 to 1,920,235
_RS09975
ABIE40_RS09980: ABIE40_RS09980 - Fe-S cluster assembly scaffold SufA, at 1,920,328 to 1,920,723
_RS09980
ABIE40_RS09985: ABIE40_RS09985 - SUF system Fe-S cluster assembly protein, at 1,920,818 to 1,921,198
_RS09985
ABIE40_RS09990: ABIE40_RS09990 - cysteine desulfurase, at 1,921,209 to 1,922,450
_RS09990
Position (kb) 1920
1921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1919.346 kb on - strand at 1919.346 kb on - strand at 1919.523 kb on + strand, within ABIE40_RS09970 at 1919.523 kb on + strand, within ABIE40_RS09970 at 1919.523 kb on + strand, within ABIE40_RS09970 at 1919.523 kb on + strand, within ABIE40_RS09970 at 1919.524 kb on - strand, within ABIE40_RS09970 at 1919.524 kb on - strand, within ABIE40_RS09970 at 1919.524 kb on - strand, within ABIE40_RS09970 at 1919.524 kb on - strand, within ABIE40_RS09970 at 1919.524 kb on - strand, within ABIE40_RS09970 at 1919.524 kb on - strand, within ABIE40_RS09970 at 1919.625 kb on + strand at 1919.625 kb on + strand at 1919.669 kb on + strand, within ABIE40_RS09975 at 1919.669 kb on + strand, within ABIE40_RS09975 at 1919.670 kb on - strand, within ABIE40_RS09975 at 1919.670 kb on - strand, within ABIE40_RS09975 at 1919.803 kb on + strand, within ABIE40_RS09975 at 1919.803 kb on + strand, within ABIE40_RS09975 at 1919.804 kb on - strand, within ABIE40_RS09975 at 1919.804 kb on - strand, within ABIE40_RS09975 at 1919.816 kb on + strand, within ABIE40_RS09975 at 1919.816 kb on + strand, within ABIE40_RS09975 at 1919.817 kb on - strand, within ABIE40_RS09975 at 1920.012 kb on + strand, within ABIE40_RS09975 at 1920.013 kb on - strand, within ABIE40_RS09975 at 1920.066 kb on + strand, within ABIE40_RS09975 at 1920.249 kb on + strand at 1920.249 kb on + strand at 1920.250 kb on - strand at 1920.250 kb on - strand at 1920.354 kb on + strand at 1920.593 kb on + strand, within ABIE40_RS09980 at 1920.593 kb on + strand, within ABIE40_RS09980 at 1920.593 kb on + strand, within ABIE40_RS09980 at 1920.594 kb on - strand, within ABIE40_RS09980 at 1920.594 kb on - strand, within ABIE40_RS09980 at 1920.594 kb on - strand, within ABIE40_RS09980 at 1920.780 kb on + strand at 1920.819 kb on + strand at 1920.820 kb on - strand at 1921.033 kb on - strand, within ABIE40_RS09985 at 1921.077 kb on + strand, within ABIE40_RS09985 at 1921.077 kb on + strand, within ABIE40_RS09985 at 1921.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 1,919,346 - -0.1 1,919,346 - +1.0 1,919,523 + ABIE40_RS09970 0.73 +1.2 1,919,523 + ABIE40_RS09970 0.73 -0.5 1,919,523 + ABIE40_RS09970 0.73 -2.7 1,919,523 + ABIE40_RS09970 0.73 -3.6 1,919,524 - ABIE40_RS09970 0.73 -0.7 1,919,524 - ABIE40_RS09970 0.73 -1.8 1,919,524 - ABIE40_RS09970 0.73 -2.3 1,919,524 - ABIE40_RS09970 0.73 -0.4 1,919,524 - ABIE40_RS09970 0.73 -0.4 1,919,524 - ABIE40_RS09970 0.73 -1.2 1,919,625 + +0.0 1,919,625 + -0.8 1,919,669 + ABIE40_RS09975 0.11 +0.2 1,919,669 + ABIE40_RS09975 0.11 +0.3 1,919,670 - ABIE40_RS09975 0.11 -1.4 1,919,670 - ABIE40_RS09975 0.11 +0.0 1,919,803 + ABIE40_RS09975 0.32 -2.5 1,919,803 + ABIE40_RS09975 0.32 -1.3 1,919,804 - ABIE40_RS09975 0.32 -0.1 1,919,804 - ABIE40_RS09975 0.32 -0.5 1,919,816 + ABIE40_RS09975 0.34 -3.3 1,919,816 + ABIE40_RS09975 0.34 +0.0 1,919,817 - ABIE40_RS09975 0.34 +0.3 1,920,012 + ABIE40_RS09975 0.65 -1.4 1,920,013 - ABIE40_RS09975 0.65 +1.6 1,920,066 + ABIE40_RS09975 0.73 -0.7 1,920,249 + +3.2 1,920,249 + +0.1 1,920,250 - -3.0 1,920,250 - +0.0 1,920,354 + +0.9 1,920,593 + ABIE40_RS09980 0.67 -2.8 1,920,593 + ABIE40_RS09980 0.67 +0.0 1,920,593 + ABIE40_RS09980 0.67 -0.4 1,920,594 - ABIE40_RS09980 0.67 -2.5 1,920,594 - ABIE40_RS09980 0.67 +1.6 1,920,594 - ABIE40_RS09980 0.67 +1.6 1,920,780 + +0.6 1,920,819 + -0.3 1,920,820 - +1.1 1,921,033 - ABIE40_RS09985 0.56 -2.5 1,921,077 + ABIE40_RS09985 0.68 -2.3 1,921,077 + ABIE40_RS09985 0.68 -2.0 1,921,200 - -0.2
Or see this region's nucleotide sequence