Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09660

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS09655 and ABIE40_RS09660 are separated by 293 nucleotidesABIE40_RS09660 and ABIE40_RS09665 are separated by 0 nucleotidesABIE40_RS09665 and ABIE40_RS09670 are separated by 114 nucleotidesABIE40_RS09670 and ABIE40_RS09675 overlap by 4 nucleotides ABIE40_RS09655: ABIE40_RS09655 - DNA topoisomerase IV subunit B, at 1,864,090 to 1,866,148 _RS09655 ABIE40_RS09660: ABIE40_RS09660 - AI-2E family transporter, at 1,866,442 to 1,867,635 _RS09660 ABIE40_RS09665: ABIE40_RS09665 - GNAT family N-acetyltransferase, at 1,867,636 to 1,868,094 _RS09665 ABIE40_RS09670: ABIE40_RS09670 - hypothetical protein, at 1,868,209 to 1,868,622 _RS09670 ABIE40_RS09675: ABIE40_RS09675 - DUF2336 domain-containing protein, at 1,868,619 to 1,869,758 _RS09675 Position (kb) 1866 1867 1868Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1866.153 kb on + strandat 1866.153 kb on + strandat 1866.154 kb on - strandat 1866.154 kb on - strandat 1866.154 kb on - strandat 1866.154 kb on - strandat 1866.321 kb on + strandat 1866.321 kb on + strandat 1866.322 kb on - strandat 1866.365 kb on + strandat 1866.577 kb on + strand, within ABIE40_RS09660at 1866.578 kb on - strand, within ABIE40_RS09660at 1866.586 kb on + strand, within ABIE40_RS09660at 1866.647 kb on - strand, within ABIE40_RS09660at 1866.647 kb on - strand, within ABIE40_RS09660at 1866.678 kb on + strand, within ABIE40_RS09660at 1866.678 kb on + strand, within ABIE40_RS09660at 1866.754 kb on + strand, within ABIE40_RS09660at 1866.754 kb on + strand, within ABIE40_RS09660at 1866.754 kb on + strand, within ABIE40_RS09660at 1866.754 kb on + strand, within ABIE40_RS09660at 1866.754 kb on + strand, within ABIE40_RS09660at 1866.755 kb on - strand, within ABIE40_RS09660at 1866.755 kb on - strand, within ABIE40_RS09660at 1866.756 kb on + strand, within ABIE40_RS09660at 1866.757 kb on - strand, within ABIE40_RS09660at 1866.807 kb on + strand, within ABIE40_RS09660at 1866.807 kb on + strand, within ABIE40_RS09660at 1866.859 kb on + strand, within ABIE40_RS09660at 1866.859 kb on + strand, within ABIE40_RS09660at 1866.859 kb on + strand, within ABIE40_RS09660at 1866.859 kb on + strand, within ABIE40_RS09660at 1866.860 kb on - strand, within ABIE40_RS09660at 1866.860 kb on - strand, within ABIE40_RS09660at 1866.860 kb on - strand, within ABIE40_RS09660at 1866.884 kb on - strand, within ABIE40_RS09660at 1866.885 kb on + strand, within ABIE40_RS09660at 1866.885 kb on + strand, within ABIE40_RS09660at 1866.948 kb on + strand, within ABIE40_RS09660at 1866.948 kb on + strand, within ABIE40_RS09660at 1866.948 kb on + strand, within ABIE40_RS09660at 1866.949 kb on - strand, within ABIE40_RS09660at 1866.952 kb on + strand, within ABIE40_RS09660at 1866.952 kb on + strand, within ABIE40_RS09660at 1866.952 kb on + strand, within ABIE40_RS09660at 1867.034 kb on + strand, within ABIE40_RS09660at 1867.034 kb on + strand, within ABIE40_RS09660at 1867.034 kb on + strand, within ABIE40_RS09660at 1867.035 kb on - strand, within ABIE40_RS09660at 1867.035 kb on - strand, within ABIE40_RS09660at 1867.035 kb on - strand, within ABIE40_RS09660at 1867.036 kb on + strand, within ABIE40_RS09660at 1867.036 kb on + strand, within ABIE40_RS09660at 1867.036 kb on + strand, within ABIE40_RS09660at 1867.202 kb on - strand, within ABIE40_RS09660at 1867.306 kb on + strand, within ABIE40_RS09660at 1867.682 kb on + strand, within ABIE40_RS09665at 1867.683 kb on - strand, within ABIE40_RS09665at 1867.709 kb on + strand, within ABIE40_RS09665at 1867.715 kb on + strand, within ABIE40_RS09665at 1867.715 kb on + strand, within ABIE40_RS09665at 1867.715 kb on + strand, within ABIE40_RS09665at 1867.715 kb on + strand, within ABIE40_RS09665at 1867.715 kb on + strand, within ABIE40_RS09665at 1867.715 kb on + strand, within ABIE40_RS09665at 1867.715 kb on + strand, within ABIE40_RS09665at 1867.715 kb on + strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1867.716 kb on - strand, within ABIE40_RS09665at 1868.022 kb on - strand, within ABIE40_RS09665at 1868.022 kb on - strand, within ABIE40_RS09665at 1868.085 kb on + strandat 1868.136 kb on - strandat 1868.150 kb on + strandat 1868.173 kb on + strandat 1868.174 kb on - strandat 1868.174 kb on - strandat 1868.191 kb on + strandat 1868.272 kb on + strand, within ABIE40_RS09670at 1868.272 kb on + strand, within ABIE40_RS09670at 1868.273 kb on - strand, within ABIE40_RS09670at 1868.363 kb on - strand, within ABIE40_RS09670at 1868.492 kb on - strand, within ABIE40_RS09670at 1868.496 kb on + strand, within ABIE40_RS09670at 1868.496 kb on + strand, within ABIE40_RS09670at 1868.496 kb on + strand, within ABIE40_RS09670at 1868.496 kb on + strand, within ABIE40_RS09670at 1868.496 kb on + strand, within ABIE40_RS09670at 1868.496 kb on + strand, within ABIE40_RS09670at 1868.496 kb on + strand, within ABIE40_RS09670at 1868.496 kb on + strand, within ABIE40_RS09670at 1868.496 kb on + strand, within ABIE40_RS09670at 1868.496 kb on + strand, within ABIE40_RS09670at 1868.497 kb on - strand, within ABIE40_RS09670at 1868.497 kb on - strand, within ABIE40_RS09670at 1868.497 kb on - strand, within ABIE40_RS09670at 1868.497 kb on - strand, within ABIE40_RS09670at 1868.497 kb on - strand, within ABIE40_RS09670at 1868.497 kb on - strand, within ABIE40_RS09670at 1868.497 kb on - strand, within ABIE40_RS09670at 1868.497 kb on - strand, within ABIE40_RS09670at 1868.497 kb on - strand, within ABIE40_RS09670at 1868.498 kb on + strand, within ABIE40_RS09670at 1868.590 kb on + strandat 1868.621 kb on - strandat 1868.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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1,866,153 + -0.4
1,866,153 + +1.0
1,866,154 - -1.7
1,866,154 - +3.3
1,866,154 - -2.9
1,866,154 - +0.0
1,866,321 + +1.6
1,866,321 + +0.9
1,866,322 - +1.2
1,866,365 + -0.7
1,866,577 + ABIE40_RS09660 0.11 -5.1
1,866,578 - ABIE40_RS09660 0.11 -0.4
1,866,586 + ABIE40_RS09660 0.12 +0.0
1,866,647 - ABIE40_RS09660 0.17 -3.8
1,866,647 - ABIE40_RS09660 0.17 -1.2
1,866,678 + ABIE40_RS09660 0.20 -4.5
1,866,678 + ABIE40_RS09660 0.20 -3.2
1,866,754 + ABIE40_RS09660 0.26 -2.0
1,866,754 + ABIE40_RS09660 0.26 -0.4
1,866,754 + ABIE40_RS09660 0.26 +1.6
1,866,754 + ABIE40_RS09660 0.26 -1.2
1,866,754 + ABIE40_RS09660 0.26 -3.3
1,866,755 - ABIE40_RS09660 0.26 -0.7
1,866,755 - ABIE40_RS09660 0.26 -4.3
1,866,756 + ABIE40_RS09660 0.26 -1.2
1,866,757 - ABIE40_RS09660 0.26 -4.4
1,866,807 + ABIE40_RS09660 0.31 -3.6
1,866,807 + ABIE40_RS09660 0.31 -2.2
1,866,859 + ABIE40_RS09660 0.35 -2.4
1,866,859 + ABIE40_RS09660 0.35 -1.7
1,866,859 + ABIE40_RS09660 0.35 -3.6
1,866,859 + ABIE40_RS09660 0.35 -4.5
1,866,860 - ABIE40_RS09660 0.35 -2.3
1,866,860 - ABIE40_RS09660 0.35 -2.4
1,866,860 - ABIE40_RS09660 0.35 -1.2
1,866,884 - ABIE40_RS09660 0.37 -3.4
1,866,885 + ABIE40_RS09660 0.37 -3.7
1,866,885 + ABIE40_RS09660 0.37 -1.8
1,866,948 + ABIE40_RS09660 0.42 -1.3
1,866,948 + ABIE40_RS09660 0.42 -2.7
1,866,948 + ABIE40_RS09660 0.42 +0.0
1,866,949 - ABIE40_RS09660 0.42 -4.7
1,866,952 + ABIE40_RS09660 0.43 -5.6
1,866,952 + ABIE40_RS09660 0.43 -0.4
1,866,952 + ABIE40_RS09660 0.43 -3.0
1,867,034 + ABIE40_RS09660 0.50 -0.4
1,867,034 + ABIE40_RS09660 0.50 -0.0
1,867,034 + ABIE40_RS09660 0.50 -2.6
1,867,035 - ABIE40_RS09660 0.50 -1.8
1,867,035 - ABIE40_RS09660 0.50 -1.6
1,867,035 - ABIE40_RS09660 0.50 -4.4
1,867,036 + ABIE40_RS09660 0.50 -3.8
1,867,036 + ABIE40_RS09660 0.50 -2.1
1,867,036 + ABIE40_RS09660 0.50 -1.6
1,867,202 - ABIE40_RS09660 0.64 -0.6
1,867,306 + ABIE40_RS09660 0.72 -2.6
1,867,682 + ABIE40_RS09665 0.10 +1.4
1,867,683 - ABIE40_RS09665 0.10 -1.4
1,867,709 + ABIE40_RS09665 0.16 -1.7
1,867,715 + ABIE40_RS09665 0.17 +0.5
1,867,715 + ABIE40_RS09665 0.17 +0.8
1,867,715 + ABIE40_RS09665 0.17 -1.8
1,867,715 + ABIE40_RS09665 0.17 -0.1
1,867,715 + ABIE40_RS09665 0.17 -1.1
1,867,715 + ABIE40_RS09665 0.17 -0.7
1,867,715 + ABIE40_RS09665 0.17 +0.8
1,867,715 + ABIE40_RS09665 0.17 -1.2
1,867,716 - ABIE40_RS09665 0.17 +1.4
1,867,716 - ABIE40_RS09665 0.17 -1.1
1,867,716 - ABIE40_RS09665 0.17 +2.0
1,867,716 - ABIE40_RS09665 0.17 +0.4
1,867,716 - ABIE40_RS09665 0.17 +0.4
1,867,716 - ABIE40_RS09665 0.17 -0.9
1,867,716 - ABIE40_RS09665 0.17 -4.5
1,867,716 - ABIE40_RS09665 0.17 -1.1
1,867,716 - ABIE40_RS09665 0.17 -1.6
1,867,716 - ABIE40_RS09665 0.17 +0.6
1,867,716 - ABIE40_RS09665 0.17 +1.7
1,868,022 - ABIE40_RS09665 0.84 -1.4
1,868,022 - ABIE40_RS09665 0.84 -1.0
1,868,085 + +0.8
1,868,136 - -0.3
1,868,150 + +0.3
1,868,173 + +1.6
1,868,174 - +0.5
1,868,174 - -0.4
1,868,191 + -1.4
1,868,272 + ABIE40_RS09670 0.15 -1.2
1,868,272 + ABIE40_RS09670 0.15 +0.8
1,868,273 - ABIE40_RS09670 0.15 +1.7
1,868,363 - ABIE40_RS09670 0.37 -0.9
1,868,492 - ABIE40_RS09670 0.68 +0.4
1,868,496 + ABIE40_RS09670 0.69 +0.2
1,868,496 + ABIE40_RS09670 0.69 -0.4
1,868,496 + ABIE40_RS09670 0.69 +0.4
1,868,496 + ABIE40_RS09670 0.69 -1.0
1,868,496 + ABIE40_RS09670 0.69 +0.1
1,868,496 + ABIE40_RS09670 0.69 -1.8
1,868,496 + ABIE40_RS09670 0.69 +0.0
1,868,496 + ABIE40_RS09670 0.69 +1.2
1,868,496 + ABIE40_RS09670 0.69 -0.3
1,868,496 + ABIE40_RS09670 0.69 -1.2
1,868,497 - ABIE40_RS09670 0.70 +0.7
1,868,497 - ABIE40_RS09670 0.70 -0.7
1,868,497 - ABIE40_RS09670 0.70 -0.6
1,868,497 - ABIE40_RS09670 0.70 -0.3
1,868,497 - ABIE40_RS09670 0.70 -1.5
1,868,497 - ABIE40_RS09670 0.70 -0.2
1,868,497 - ABIE40_RS09670 0.70 +0.4
1,868,497 - ABIE40_RS09670 0.70 -1.7
1,868,497 - ABIE40_RS09670 0.70 -0.3
1,868,498 + ABIE40_RS09670 0.70 -0.2
1,868,590 + -1.8
1,868,621 - +0.2
1,868,621 - +0.0

Or see this region's nucleotide sequence