Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS04335

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS04325 and ABIE40_RS04330 are separated by 98 nucleotidesABIE40_RS04330 and ABIE40_RS04335 are separated by 254 nucleotidesABIE40_RS04335 and ABIE40_RS04340 overlap by 4 nucleotides ABIE40_RS04325: ABIE40_RS04325 - hypothetical protein, at 855,975 to 856,250 _RS04325 ABIE40_RS04330: ABIE40_RS04330 - hypothetical protein, at 856,349 to 856,738 _RS04330 ABIE40_RS04335: ABIE40_RS04335 - DUF1499 domain-containing protein, at 856,993 to 857,904 _RS04335 ABIE40_RS04340: ABIE40_RS04340 - SDR family oxidoreductase, at 857,901 to 859,586 _RS04340 Position (kb) 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 856.003 kb on + strand, within ABIE40_RS04325at 856.003 kb on + strand, within ABIE40_RS04325at 856.003 kb on + strand, within ABIE40_RS04325at 856.003 kb on + strand, within ABIE40_RS04325at 856.004 kb on - strand, within ABIE40_RS04325at 856.004 kb on - strand, within ABIE40_RS04325at 856.135 kb on + strand, within ABIE40_RS04325at 856.135 kb on + strand, within ABIE40_RS04325at 856.253 kb on + strandat 856.253 kb on + strandat 856.253 kb on + strandat 856.253 kb on + strandat 856.253 kb on + strandat 856.253 kb on + strandat 856.253 kb on + strandat 856.254 kb on - strandat 856.254 kb on - strandat 856.254 kb on - strandat 856.254 kb on - strandat 856.254 kb on - strandat 856.254 kb on - strandat 856.254 kb on - strandat 856.254 kb on - strandat 856.254 kb on - strandat 856.254 kb on - strandat 856.254 kb on - strandat 856.621 kb on + strand, within ABIE40_RS04330at 856.621 kb on + strand, within ABIE40_RS04330at 856.622 kb on - strand, within ABIE40_RS04330at 856.622 kb on - strand, within ABIE40_RS04330at 856.623 kb on + strand, within ABIE40_RS04330at 856.623 kb on + strand, within ABIE40_RS04330at 856.624 kb on - strand, within ABIE40_RS04330at 856.624 kb on - strand, within ABIE40_RS04330at 856.624 kb on - strand, within ABIE40_RS04330at 856.825 kb on + strandat 856.825 kb on + strandat 856.826 kb on - strandat 856.833 kb on - strandat 856.928 kb on - strandat 856.977 kb on - strandat 856.977 kb on - strandat 856.979 kb on - strandat 856.979 kb on - strandat 856.985 kb on + strandat 856.985 kb on + strandat 857.119 kb on + strand, within ABIE40_RS04335at 857.119 kb on + strand, within ABIE40_RS04335at 857.119 kb on + strand, within ABIE40_RS04335at 857.119 kb on + strand, within ABIE40_RS04335at 857.119 kb on + strand, within ABIE40_RS04335at 857.119 kb on + strand, within ABIE40_RS04335at 857.119 kb on + strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.120 kb on - strand, within ABIE40_RS04335at 857.293 kb on + strand, within ABIE40_RS04335at 857.293 kb on + strand, within ABIE40_RS04335at 857.293 kb on + strand, within ABIE40_RS04335at 857.293 kb on + strand, within ABIE40_RS04335at 857.294 kb on - strand, within ABIE40_RS04335at 857.294 kb on - strand, within ABIE40_RS04335at 857.294 kb on - strand, within ABIE40_RS04335at 857.294 kb on - strand, within ABIE40_RS04335at 857.294 kb on - strand, within ABIE40_RS04335at 857.314 kb on + strand, within ABIE40_RS04335at 857.314 kb on + strand, within ABIE40_RS04335at 857.314 kb on + strand, within ABIE40_RS04335at 857.314 kb on + strand, within ABIE40_RS04335at 857.314 kb on + strand, within ABIE40_RS04335at 857.314 kb on + strand, within ABIE40_RS04335at 857.315 kb on - strand, within ABIE40_RS04335at 857.315 kb on - strand, within ABIE40_RS04335at 857.315 kb on - strand, within ABIE40_RS04335at 857.315 kb on - strand, within ABIE40_RS04335at 857.315 kb on - strand, within ABIE40_RS04335at 857.315 kb on - strand, within ABIE40_RS04335at 857.315 kb on - strand, within ABIE40_RS04335at 857.402 kb on + strand, within ABIE40_RS04335at 857.403 kb on - strand, within ABIE40_RS04335at 857.437 kb on + strand, within ABIE40_RS04335at 857.659 kb on + strand, within ABIE40_RS04335at 857.659 kb on + strand, within ABIE40_RS04335at 857.924 kb on + strandat 857.926 kb on + strandat 857.926 kb on + strandat 857.927 kb on - strandat 857.927 kb on - strandat 857.927 kb on - strandat 858.005 kb on + strandat 858.005 kb on + strandat 858.006 kb on - strandat 858.006 kb on - strandat 858.006 kb on - strandat 858.254 kb on + strand, within ABIE40_RS04340at 858.255 kb on - strand, within ABIE40_RS04340at 858.349 kb on + strand, within ABIE40_RS04340at 858.616 kb on - strand, within ABIE40_RS04340at 858.656 kb on - strand, within ABIE40_RS04340at 858.690 kb on + strand, within ABIE40_RS04340at 858.691 kb on - strand, within ABIE40_RS04340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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856,003 + ABIE40_RS04325 0.10 -2.2
856,003 + ABIE40_RS04325 0.10 +2.4
856,003 + ABIE40_RS04325 0.10 +2.0
856,003 + ABIE40_RS04325 0.10 -2.3
856,004 - ABIE40_RS04325 0.11 +2.4
856,004 - ABIE40_RS04325 0.11 -2.5
856,135 + ABIE40_RS04325 0.58 -1.9
856,135 + ABIE40_RS04325 0.58 +0.3
856,253 + +0.5
856,253 + +0.3
856,253 + -1.0
856,253 + +0.9
856,253 + +0.5
856,253 + +0.4
856,253 + -0.4
856,254 - +0.2
856,254 - -2.3
856,254 - -1.7
856,254 - -2.8
856,254 - +1.1
856,254 - +0.6
856,254 - -3.7
856,254 - -0.4
856,254 - -3.3
856,254 - +2.2
856,254 - -3.0
856,621 + ABIE40_RS04330 0.70 -0.9
856,621 + ABIE40_RS04330 0.70 -1.6
856,622 - ABIE40_RS04330 0.70 -0.7
856,622 - ABIE40_RS04330 0.70 +0.3
856,623 + ABIE40_RS04330 0.70 +0.2
856,623 + ABIE40_RS04330 0.70 +1.0
856,624 - ABIE40_RS04330 0.71 +0.4
856,624 - ABIE40_RS04330 0.71 -2.6
856,624 - ABIE40_RS04330 0.71 -1.1
856,825 + +0.0
856,825 + +2.2
856,826 - -1.0
856,833 - +2.0
856,928 - +1.1
856,977 - -1.2
856,977 - +1.2
856,979 - -0.4
856,979 - +0.1
856,985 + +0.8
856,985 + -2.1
857,119 + ABIE40_RS04335 0.14 -1.7
857,119 + ABIE40_RS04335 0.14 -0.3
857,119 + ABIE40_RS04335 0.14 +1.1
857,119 + ABIE40_RS04335 0.14 -0.5
857,119 + ABIE40_RS04335 0.14 -0.5
857,119 + ABIE40_RS04335 0.14 -1.0
857,119 + ABIE40_RS04335 0.14 +0.1
857,120 - ABIE40_RS04335 0.14 +0.2
857,120 - ABIE40_RS04335 0.14 +0.2
857,120 - ABIE40_RS04335 0.14 -0.4
857,120 - ABIE40_RS04335 0.14 -0.2
857,120 - ABIE40_RS04335 0.14 -0.4
857,120 - ABIE40_RS04335 0.14 +1.0
857,120 - ABIE40_RS04335 0.14 -0.2
857,120 - ABIE40_RS04335 0.14 +0.6
857,120 - ABIE40_RS04335 0.14 +0.6
857,120 - ABIE40_RS04335 0.14 -0.1
857,120 - ABIE40_RS04335 0.14 +0.5
857,293 + ABIE40_RS04335 0.33 -0.2
857,293 + ABIE40_RS04335 0.33 +4.0
857,293 + ABIE40_RS04335 0.33 +2.1
857,293 + ABIE40_RS04335 0.33 -0.5
857,294 - ABIE40_RS04335 0.33 +0.9
857,294 - ABIE40_RS04335 0.33 -1.5
857,294 - ABIE40_RS04335 0.33 +0.0
857,294 - ABIE40_RS04335 0.33 +0.9
857,294 - ABIE40_RS04335 0.33 +0.5
857,314 + ABIE40_RS04335 0.35 +0.4
857,314 + ABIE40_RS04335 0.35 +0.2
857,314 + ABIE40_RS04335 0.35 -0.2
857,314 + ABIE40_RS04335 0.35 +5.5
857,314 + ABIE40_RS04335 0.35 -1.6
857,314 + ABIE40_RS04335 0.35 +0.0
857,315 - ABIE40_RS04335 0.35 +0.6
857,315 - ABIE40_RS04335 0.35 -0.8
857,315 - ABIE40_RS04335 0.35 +1.8
857,315 - ABIE40_RS04335 0.35 +2.6
857,315 - ABIE40_RS04335 0.35 +0.3
857,315 - ABIE40_RS04335 0.35 -0.9
857,315 - ABIE40_RS04335 0.35 -1.7
857,402 + ABIE40_RS04335 0.45 -2.6
857,403 - ABIE40_RS04335 0.45 +0.9
857,437 + ABIE40_RS04335 0.49 -1.7
857,659 + ABIE40_RS04335 0.73 +1.1
857,659 + ABIE40_RS04335 0.73 +1.0
857,924 + -2.4
857,926 + -3.0
857,926 + -2.6
857,927 - -0.6
857,927 - -2.0
857,927 - +1.0
858,005 + +0.4
858,005 + +0.6
858,006 - +0.9
858,006 - -0.6
858,006 - +0.5
858,254 + ABIE40_RS04340 0.21 -1.5
858,255 - ABIE40_RS04340 0.21 +0.8
858,349 + ABIE40_RS04340 0.27 -0.3
858,616 - ABIE40_RS04340 0.42 +1.0
858,656 - ABIE40_RS04340 0.45 -0.1
858,690 + ABIE40_RS04340 0.47 +0.4
858,691 - ABIE40_RS04340 0.47 -3.2

Or see this region's nucleotide sequence