Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01905 and ABIE40_RS01910 are separated by 20 nucleotides ABIE40_RS01910 and ABIE40_RS01915 overlap by 1 nucleotides ABIE40_RS01915 and ABIE40_RS01920 overlap by 23 nucleotides ABIE40_RS01920 and ABIE40_RS01925 overlap by 13 nucleotides ABIE40_RS01925 and ABIE40_RS01930 overlap by 14 nucleotides
ABIE40_RS01905: ABIE40_RS01905 - type II toxin-antitoxin system VapC family toxin, at 376,711 to 377,133
_RS01905
ABIE40_RS01910: ABIE40_RS01910 - methionyl-tRNA formyltransferase, at 377,154 to 378,089
_RS01910
ABIE40_RS01915: ABIE40_RS01915 - tRNA pseudouridine(38-40) synthase TruA, at 378,089 to 378,895
_RS01915
ABIE40_RS01920: ABIE40_RS01920 - arsenate reductase (glutaredoxin), at 378,873 to 379,289
_RS01920
ABIE40_RS01925: ABIE40_RS01925 - hypothetical protein, at 379,277 to 379,873
_RS01925
ABIE40_RS01930: ABIE40_RS01930 - succinyl-diaminopimelate desuccinylase, at 379,860 to 381,053
_RS01930
Position (kb) 378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 377.150 kb on + strand at 377.150 kb on + strand at 377.150 kb on + strand at 377.150 kb on + strand at 377.150 kb on + strand at 377.150 kb on + strand at 377.150 kb on + strand at 377.153 kb on + strand at 377.153 kb on + strand at 377.153 kb on + strand at 377.153 kb on + strand at 377.153 kb on + strand at 377.153 kb on + strand at 377.153 kb on + strand at 377.153 kb on + strand at 378.117 kb on - strand at 378.131 kb on + strand at 378.132 kb on - strand at 378.169 kb on - strand at 378.425 kb on + strand, within ABIE40_RS01915 at 378.425 kb on + strand, within ABIE40_RS01915 at 378.426 kb on - strand, within ABIE40_RS01915 at 378.426 kb on - strand, within ABIE40_RS01915 at 378.809 kb on + strand, within ABIE40_RS01915 at 378.809 kb on + strand, within ABIE40_RS01915 at 378.810 kb on - strand, within ABIE40_RS01915 at 378.847 kb on + strand at 378.888 kb on + strand at 378.888 kb on + strand at 378.888 kb on + strand at 378.889 kb on - strand at 378.889 kb on - strand at 378.889 kb on - strand at 378.889 kb on - strand at 378.889 kb on - strand at 378.970 kb on - strand, within ABIE40_RS01920 at 378.970 kb on - strand, within ABIE40_RS01920 at 378.970 kb on - strand, within ABIE40_RS01920 at 379.085 kb on + strand, within ABIE40_RS01920 at 379.086 kb on - strand, within ABIE40_RS01920 at 379.086 kb on - strand, within ABIE40_RS01920 at 379.287 kb on + strand at 379.288 kb on - strand at 379.311 kb on + strand at 379.311 kb on + strand at 379.509 kb on + strand, within ABIE40_RS01925 at 379.509 kb on + strand, within ABIE40_RS01925 at 379.509 kb on + strand, within ABIE40_RS01925 at 379.651 kb on - strand, within ABIE40_RS01925 at 379.671 kb on + strand, within ABIE40_RS01925 at 379.671 kb on + strand, within ABIE40_RS01925 at 379.672 kb on - strand, within ABIE40_RS01925 at 379.672 kb on - strand, within ABIE40_RS01925 at 379.672 kb on - strand, within ABIE40_RS01925 at 379.845 kb on + strand at 379.845 kb on + strand at 379.845 kb on + strand at 379.845 kb on + strand at 379.845 kb on + strand at 379.846 kb on - strand at 379.846 kb on - strand at 379.846 kb on - strand at 379.848 kb on + strand at 379.848 kb on + strand at 379.848 kb on + strand at 379.849 kb on - strand at 379.849 kb on - strand at 379.861 kb on + strand at 379.862 kb on - strand at 379.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 377,150 + +1.0 377,150 + -1.0 377,150 + -3.3 377,150 + +0.9 377,150 + -0.1 377,150 + -1.1 377,150 + -3.7 377,153 + -0.2 377,153 + -2.1 377,153 + -0.6 377,153 + +0.5 377,153 + +1.1 377,153 + -1.1 377,153 + +0.1 377,153 + -1.8 378,117 - +1.0 378,131 + -0.8 378,132 - +0.4 378,169 - +1.0 378,425 + ABIE40_RS01915 0.42 -3.3 378,425 + ABIE40_RS01915 0.42 +2.2 378,426 - ABIE40_RS01915 0.42 -2.1 378,426 - ABIE40_RS01915 0.42 -3.3 378,809 + ABIE40_RS01915 0.89 -3.1 378,809 + ABIE40_RS01915 0.89 -1.8 378,810 - ABIE40_RS01915 0.89 -1.2 378,847 + -3.2 378,888 + -0.5 378,888 + +0.2 378,888 + -0.6 378,889 - -1.3 378,889 - -1.4 378,889 - +0.7 378,889 - -0.4 378,889 - -0.6 378,970 - ABIE40_RS01920 0.23 -1.2 378,970 - ABIE40_RS01920 0.23 -0.8 378,970 - ABIE40_RS01920 0.23 -0.1 379,085 + ABIE40_RS01920 0.51 -0.2 379,086 - ABIE40_RS01920 0.51 +0.6 379,086 - ABIE40_RS01920 0.51 -1.8 379,287 + -0.7 379,288 - -2.2 379,311 + -3.3 379,311 + -2.7 379,509 + ABIE40_RS01925 0.39 -0.6 379,509 + ABIE40_RS01925 0.39 +0.7 379,509 + ABIE40_RS01925 0.39 -0.1 379,651 - ABIE40_RS01925 0.63 +0.8 379,671 + ABIE40_RS01925 0.66 -2.6 379,671 + ABIE40_RS01925 0.66 -1.4 379,672 - ABIE40_RS01925 0.66 -1.0 379,672 - ABIE40_RS01925 0.66 -1.1 379,672 - ABIE40_RS01925 0.66 -0.1 379,845 + -3.1 379,845 + -0.3 379,845 + +0.0 379,845 + -0.1 379,845 + +1.2 379,846 - +0.3 379,846 - +1.1 379,846 - +0.0 379,848 + -0.4 379,848 + -1.6 379,848 + +0.5 379,849 - -0.4 379,849 - +0.6 379,861 + -2.8 379,862 - -0.0 379,862 - -1.4
Or see this region's nucleotide sequence