Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01170

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01160 and ABIE40_RS01165 overlap by 11 nucleotidesABIE40_RS01165 and ABIE40_RS01170 are separated by 11 nucleotidesABIE40_RS01170 and ABIE40_RS01175 are separated by 181 nucleotides ABIE40_RS01160: ABIE40_RS01160 - hypothetical protein, at 231,412 to 232,029 _RS01160 ABIE40_RS01165: ABIE40_RS01165 - GNAT family N-acetyltransferase, at 232,019 to 232,462 _RS01165 ABIE40_RS01170: ABIE40_RS01170 - aldo/keto reductase, at 232,474 to 233,421 _RS01170 ABIE40_RS01175: ABIE40_RS01175 - Gfo/Idh/MocA family oxidoreductase, at 233,603 to 234,589 _RS01175 Position (kb) 232 233 234Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 231.517 kb on + strand, within ABIE40_RS01160at 231.517 kb on + strand, within ABIE40_RS01160at 231.524 kb on + strand, within ABIE40_RS01160at 231.531 kb on + strand, within ABIE40_RS01160at 231.532 kb on - strand, within ABIE40_RS01160at 231.532 kb on - strand, within ABIE40_RS01160at 231.719 kb on + strand, within ABIE40_RS01160at 231.719 kb on + strand, within ABIE40_RS01160at 231.719 kb on + strand, within ABIE40_RS01160at 231.719 kb on + strand, within ABIE40_RS01160at 231.719 kb on + strand, within ABIE40_RS01160at 231.720 kb on - strand, within ABIE40_RS01160at 231.720 kb on - strand, within ABIE40_RS01160at 231.720 kb on - strand, within ABIE40_RS01160at 231.720 kb on - strand, within ABIE40_RS01160at 231.720 kb on - strand, within ABIE40_RS01160at 231.720 kb on - strand, within ABIE40_RS01160at 231.793 kb on + strand, within ABIE40_RS01160at 231.793 kb on + strand, within ABIE40_RS01160at 231.794 kb on - strand, within ABIE40_RS01160at 231.851 kb on - strand, within ABIE40_RS01160at 231.878 kb on + strand, within ABIE40_RS01160at 231.879 kb on - strand, within ABIE40_RS01160at 231.918 kb on + strand, within ABIE40_RS01160at 231.931 kb on + strand, within ABIE40_RS01160at 231.931 kb on + strand, within ABIE40_RS01160at 231.931 kb on + strand, within ABIE40_RS01160at 231.931 kb on + strand, within ABIE40_RS01160at 231.931 kb on + strand, within ABIE40_RS01160at 231.931 kb on + strand, within ABIE40_RS01160at 231.931 kb on + strand, within ABIE40_RS01160at 231.931 kb on + strand, within ABIE40_RS01160at 231.931 kb on + strand, within ABIE40_RS01160at 231.932 kb on - strand, within ABIE40_RS01160at 231.932 kb on - strand, within ABIE40_RS01160at 231.932 kb on - strand, within ABIE40_RS01160at 231.932 kb on - strand, within ABIE40_RS01160at 231.932 kb on - strand, within ABIE40_RS01160at 231.932 kb on - strand, within ABIE40_RS01160at 231.932 kb on - strand, within ABIE40_RS01160at 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.062 kb on + strandat 232.063 kb on - strandat 232.063 kb on - strandat 232.063 kb on - strandat 232.063 kb on - strandat 232.063 kb on - strandat 232.063 kb on - strandat 232.063 kb on - strandat 232.071 kb on + strand, within ABIE40_RS01165at 232.071 kb on + strand, within ABIE40_RS01165at 232.072 kb on - strand, within ABIE40_RS01165at 232.072 kb on - strand, within ABIE40_RS01165at 232.113 kb on + strand, within ABIE40_RS01165at 232.114 kb on - strand, within ABIE40_RS01165at 232.221 kb on + strand, within ABIE40_RS01165at 232.221 kb on + strand, within ABIE40_RS01165at 232.221 kb on + strand, within ABIE40_RS01165at 232.221 kb on + strand, within ABIE40_RS01165at 232.222 kb on - strand, within ABIE40_RS01165at 232.222 kb on - strand, within ABIE40_RS01165at 232.383 kb on + strand, within ABIE40_RS01165at 232.383 kb on + strand, within ABIE40_RS01165at 232.384 kb on - strand, within ABIE40_RS01165at 232.384 kb on - strand, within ABIE40_RS01165at 232.395 kb on + strand, within ABIE40_RS01165at 232.395 kb on + strand, within ABIE40_RS01165at 232.398 kb on + strand, within ABIE40_RS01165at 232.566 kb on + strandat 232.566 kb on + strandat 232.567 kb on - strandat 232.567 kb on - strandat 232.677 kb on + strand, within ABIE40_RS01170at 232.677 kb on + strand, within ABIE40_RS01170at 232.677 kb on + strand, within ABIE40_RS01170at 232.677 kb on + strand, within ABIE40_RS01170at 232.677 kb on + strand, within ABIE40_RS01170at 232.700 kb on + strand, within ABIE40_RS01170at 232.747 kb on - strand, within ABIE40_RS01170at 232.747 kb on - strand, within ABIE40_RS01170at 232.754 kb on + strand, within ABIE40_RS01170at 232.755 kb on - strand, within ABIE40_RS01170at 232.790 kb on + strand, within ABIE40_RS01170at 232.790 kb on + strand, within ABIE40_RS01170at 232.790 kb on + strand, within ABIE40_RS01170at 232.791 kb on - strand, within ABIE40_RS01170at 232.791 kb on - strand, within ABIE40_RS01170at 232.791 kb on - strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.867 kb on - strand, within ABIE40_RS01170at 232.867 kb on - strand, within ABIE40_RS01170at 232.867 kb on - strand, within ABIE40_RS01170at 232.867 kb on - strand, within ABIE40_RS01170at 232.867 kb on - strand, within ABIE40_RS01170at 232.868 kb on + strand, within ABIE40_RS01170at 232.869 kb on - strand, within ABIE40_RS01170at 232.869 kb on - strand, within ABIE40_RS01170at 232.869 kb on - strand, within ABIE40_RS01170at 232.869 kb on - strand, within ABIE40_RS01170at 232.882 kb on + strand, within ABIE40_RS01170at 232.883 kb on - strand, within ABIE40_RS01170at 232.883 kb on - strand, within ABIE40_RS01170at 232.883 kb on - strand, within ABIE40_RS01170at 232.883 kb on - strand, within ABIE40_RS01170at 232.889 kb on + strand, within ABIE40_RS01170at 232.889 kb on + strand, within ABIE40_RS01170at 232.890 kb on - strand, within ABIE40_RS01170at 232.949 kb on + strand, within ABIE40_RS01170at 232.950 kb on - strand, within ABIE40_RS01170at 232.950 kb on - strand, within ABIE40_RS01170at 232.950 kb on - strand, within ABIE40_RS01170at 232.950 kb on - strand, within ABIE40_RS01170at 233.000 kb on + strand, within ABIE40_RS01170at 233.001 kb on - strand, within ABIE40_RS01170at 233.028 kb on + strand, within ABIE40_RS01170at 233.054 kb on + strand, within ABIE40_RS01170at 233.054 kb on + strand, within ABIE40_RS01170at 233.055 kb on - strand, within ABIE40_RS01170at 233.055 kb on - strand, within ABIE40_RS01170at 233.067 kb on - strand, within ABIE40_RS01170at 233.067 kb on - strand, within ABIE40_RS01170at 233.067 kb on - strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.115 kb on - strand, within ABIE40_RS01170at 233.115 kb on - strand, within ABIE40_RS01170at 233.115 kb on - strand, within ABIE40_RS01170at 233.115 kb on - strand, within ABIE40_RS01170at 233.265 kb on - strand, within ABIE40_RS01170at 233.415 kb on + strandat 233.432 kb on + strandat 233.489 kb on + strandat 233.489 kb on + strandat 233.489 kb on + strandat 233.490 kb on - strandat 233.566 kb on + strandat 233.566 kb on + strandat 233.566 kb on + strandat 233.567 kb on - strandat 233.567 kb on - strandat 233.567 kb on - strandat 233.626 kb on + strandat 233.768 kb on + strand, within ABIE40_RS01175at 233.768 kb on + strand, within ABIE40_RS01175at 233.768 kb on + strand, within ABIE40_RS01175at 233.769 kb on - strand, within ABIE40_RS01175at 233.769 kb on - strand, within ABIE40_RS01175at 233.769 kb on - strand, within ABIE40_RS01175at 233.807 kb on + strand, within ABIE40_RS01175at 233.807 kb on + strand, within ABIE40_RS01175at 233.808 kb on - strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.834 kb on - strand, within ABIE40_RS01175at 233.834 kb on - strand, within ABIE40_RS01175at 233.978 kb on + strand, within ABIE40_RS01175at 233.978 kb on + strand, within ABIE40_RS01175at 233.978 kb on + strand, within ABIE40_RS01175at 233.978 kb on + strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 234.062 kb on + strand, within ABIE40_RS01175at 234.062 kb on + strand, within ABIE40_RS01175at 234.063 kb on - strand, within ABIE40_RS01175at 234.063 kb on - strand, within ABIE40_RS01175at 234.063 kb on - strand, within ABIE40_RS01175at 234.230 kb on + strand, within ABIE40_RS01175at 234.230 kb on + strand, within ABIE40_RS01175at 234.230 kb on + strand, within ABIE40_RS01175at 234.230 kb on + strand, within ABIE40_RS01175at 234.230 kb on + strand, within ABIE40_RS01175at 234.231 kb on - strand, within ABIE40_RS01175at 234.231 kb on - strand, within ABIE40_RS01175at 234.275 kb on + strand, within ABIE40_RS01175at 234.275 kb on + strand, within ABIE40_RS01175at 234.275 kb on + strand, within ABIE40_RS01175at 234.276 kb on - strand, within ABIE40_RS01175at 234.276 kb on - strand, within ABIE40_RS01175

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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231,517 + ABIE40_RS01160 0.17 +1.2
231,517 + ABIE40_RS01160 0.17 +1.7
231,524 + ABIE40_RS01160 0.18 -0.7
231,531 + ABIE40_RS01160 0.19 +0.9
231,532 - ABIE40_RS01160 0.19 +0.3
231,532 - ABIE40_RS01160 0.19 -0.2
231,719 + ABIE40_RS01160 0.50 -1.4
231,719 + ABIE40_RS01160 0.50 -0.9
231,719 + ABIE40_RS01160 0.50 +0.6
231,719 + ABIE40_RS01160 0.50 -0.2
231,719 + ABIE40_RS01160 0.50 +0.4
231,720 - ABIE40_RS01160 0.50 +1.3
231,720 - ABIE40_RS01160 0.50 -0.9
231,720 - ABIE40_RS01160 0.50 -0.5
231,720 - ABIE40_RS01160 0.50 +0.3
231,720 - ABIE40_RS01160 0.50 +0.1
231,720 - ABIE40_RS01160 0.50 -2.5
231,793 + ABIE40_RS01160 0.62 -1.3
231,793 + ABIE40_RS01160 0.62 +1.3
231,794 - ABIE40_RS01160 0.62 +0.4
231,851 - ABIE40_RS01160 0.71 +1.0
231,878 + ABIE40_RS01160 0.75 +0.9
231,879 - ABIE40_RS01160 0.76 +2.7
231,918 + ABIE40_RS01160 0.82 -0.6
231,931 + ABIE40_RS01160 0.84 -3.3
231,931 + ABIE40_RS01160 0.84 +0.7
231,931 + ABIE40_RS01160 0.84 +1.0
231,931 + ABIE40_RS01160 0.84 +0.1
231,931 + ABIE40_RS01160 0.84 +2.0
231,931 + ABIE40_RS01160 0.84 +0.0
231,931 + ABIE40_RS01160 0.84 +0.2
231,931 + ABIE40_RS01160 0.84 +0.4
231,931 + ABIE40_RS01160 0.84 +0.1
231,932 - ABIE40_RS01160 0.84 +1.2
231,932 - ABIE40_RS01160 0.84 -1.7
231,932 - ABIE40_RS01160 0.84 +0.3
231,932 - ABIE40_RS01160 0.84 +1.9
231,932 - ABIE40_RS01160 0.84 -0.5
231,932 - ABIE40_RS01160 0.84 -0.3
231,932 - ABIE40_RS01160 0.84 -0.3
232,062 + -2.5
232,062 + +1.1
232,062 + +0.5
232,062 + -0.0
232,062 + -0.1
232,062 + -0.8
232,062 + -2.7
232,062 + -3.1
232,062 + +0.8
232,062 + -2.6
232,062 + +0.4
232,062 + +0.4
232,062 + +0.3
232,062 + -2.8
232,062 + -0.9
232,062 + -0.3
232,062 + -1.2
232,062 + -0.9
232,062 + +0.9
232,063 - -2.3
232,063 - -1.1
232,063 - -0.3
232,063 - -0.4
232,063 - -1.1
232,063 - +2.6
232,063 - +2.3
232,071 + ABIE40_RS01165 0.12 +3.5
232,071 + ABIE40_RS01165 0.12 -2.8
232,072 - ABIE40_RS01165 0.12 +1.3
232,072 - ABIE40_RS01165 0.12 -3.4
232,113 + ABIE40_RS01165 0.21 -1.7
232,114 - ABIE40_RS01165 0.21 +0.9
232,221 + ABIE40_RS01165 0.45 +0.8
232,221 + ABIE40_RS01165 0.45 -1.2
232,221 + ABIE40_RS01165 0.45 +1.1
232,221 + ABIE40_RS01165 0.45 +0.7
232,222 - ABIE40_RS01165 0.46 +0.3
232,222 - ABIE40_RS01165 0.46 +0.9
232,383 + ABIE40_RS01165 0.82 +0.2
232,383 + ABIE40_RS01165 0.82 -0.3
232,384 - ABIE40_RS01165 0.82 +0.0
232,384 - ABIE40_RS01165 0.82 -0.1
232,395 + ABIE40_RS01165 0.85 +1.0
232,395 + ABIE40_RS01165 0.85 +1.4
232,398 + ABIE40_RS01165 0.85 -0.5
232,566 + +0.1
232,566 + -0.3
232,567 - -0.9
232,567 - -0.7
232,677 + ABIE40_RS01170 0.21 +0.0
232,677 + ABIE40_RS01170 0.21 -0.3
232,677 + ABIE40_RS01170 0.21 +0.4
232,677 + ABIE40_RS01170 0.21 +0.8
232,677 + ABIE40_RS01170 0.21 -0.4
232,700 + ABIE40_RS01170 0.24 -0.3
232,747 - ABIE40_RS01170 0.29 -1.1
232,747 - ABIE40_RS01170 0.29 +0.3
232,754 + ABIE40_RS01170 0.30 +0.6
232,755 - ABIE40_RS01170 0.30 -1.1
232,790 + ABIE40_RS01170 0.33 +0.2
232,790 + ABIE40_RS01170 0.33 -3.7
232,790 + ABIE40_RS01170 0.33 -0.1
232,791 - ABIE40_RS01170 0.33 +1.6
232,791 - ABIE40_RS01170 0.33 +0.9
232,791 - ABIE40_RS01170 0.33 +0.8
232,866 + ABIE40_RS01170 0.41 +2.0
232,866 + ABIE40_RS01170 0.41 -2.1
232,866 + ABIE40_RS01170 0.41 +0.6
232,866 + ABIE40_RS01170 0.41 -0.7
232,866 + ABIE40_RS01170 0.41 -0.5
232,866 + ABIE40_RS01170 0.41 +0.6
232,866 + ABIE40_RS01170 0.41 -1.5
232,866 + ABIE40_RS01170 0.41 +0.5
232,866 + ABIE40_RS01170 0.41 -0.7
232,867 - ABIE40_RS01170 0.41 -1.3
232,867 - ABIE40_RS01170 0.41 -1.6
232,867 - ABIE40_RS01170 0.41 +1.8
232,867 - ABIE40_RS01170 0.41 +0.3
232,867 - ABIE40_RS01170 0.41 +1.3
232,868 + ABIE40_RS01170 0.42 -3.9
232,869 - ABIE40_RS01170 0.42 -3.1
232,869 - ABIE40_RS01170 0.42 +0.0
232,869 - ABIE40_RS01170 0.42 -4.6
232,869 - ABIE40_RS01170 0.42 -1.6
232,882 + ABIE40_RS01170 0.43 +2.5
232,883 - ABIE40_RS01170 0.43 +2.1
232,883 - ABIE40_RS01170 0.43 +0.0
232,883 - ABIE40_RS01170 0.43 -1.0
232,883 - ABIE40_RS01170 0.43 +0.8
232,889 + ABIE40_RS01170 0.44 +0.4
232,889 + ABIE40_RS01170 0.44 +0.6
232,890 - ABIE40_RS01170 0.44 +2.4
232,949 + ABIE40_RS01170 0.50 -1.3
232,950 - ABIE40_RS01170 0.50 -2.3
232,950 - ABIE40_RS01170 0.50 -2.7
232,950 - ABIE40_RS01170 0.50 -1.6
232,950 - ABIE40_RS01170 0.50 +0.7
233,000 + ABIE40_RS01170 0.55 -0.9
233,001 - ABIE40_RS01170 0.56 +0.2
233,028 + ABIE40_RS01170 0.58 -0.1
233,054 + ABIE40_RS01170 0.61 -0.6
233,054 + ABIE40_RS01170 0.61 +1.1
233,055 - ABIE40_RS01170 0.61 +0.7
233,055 - ABIE40_RS01170 0.61 -2.8
233,067 - ABIE40_RS01170 0.63 -0.1
233,067 - ABIE40_RS01170 0.63 -2.6
233,067 - ABIE40_RS01170 0.63 -1.7
233,114 + ABIE40_RS01170 0.68 -0.3
233,114 + ABIE40_RS01170 0.68 +0.8
233,114 + ABIE40_RS01170 0.68 +0.6
233,114 + ABIE40_RS01170 0.68 +1.1
233,114 + ABIE40_RS01170 0.68 -0.6
233,114 + ABIE40_RS01170 0.68 +0.1
233,115 - ABIE40_RS01170 0.68 -0.0
233,115 - ABIE40_RS01170 0.68 -3.1
233,115 - ABIE40_RS01170 0.68 -1.8
233,115 - ABIE40_RS01170 0.68 -0.5
233,265 - ABIE40_RS01170 0.83 +1.9
233,415 + -1.8
233,432 + -0.7
233,489 + +0.5
233,489 + +0.2
233,489 + -0.9
233,490 - +1.3
233,566 + -0.6
233,566 + -0.5
233,566 + +0.1
233,567 - -1.0
233,567 - -0.7
233,567 - +0.1
233,626 + -1.7
233,768 + ABIE40_RS01175 0.17 -2.7
233,768 + ABIE40_RS01175 0.17 -1.3
233,768 + ABIE40_RS01175 0.17 -1.8
233,769 - ABIE40_RS01175 0.17 -0.6
233,769 - ABIE40_RS01175 0.17 -0.9
233,769 - ABIE40_RS01175 0.17 +0.4
233,807 + ABIE40_RS01175 0.21 -1.9
233,807 + ABIE40_RS01175 0.21 +1.2
233,808 - ABIE40_RS01175 0.21 -2.1
233,833 + ABIE40_RS01175 0.23 -0.1
233,833 + ABIE40_RS01175 0.23 -0.3
233,833 + ABIE40_RS01175 0.23 +0.1
233,833 + ABIE40_RS01175 0.23 +0.4
233,833 + ABIE40_RS01175 0.23 -0.1
233,833 + ABIE40_RS01175 0.23 +0.7
233,834 - ABIE40_RS01175 0.23 +1.3
233,834 - ABIE40_RS01175 0.23 +0.6
233,978 + ABIE40_RS01175 0.38 -0.9
233,978 + ABIE40_RS01175 0.38 -2.2
233,978 + ABIE40_RS01175 0.38 -3.4
233,978 + ABIE40_RS01175 0.38 -0.7
233,979 - ABIE40_RS01175 0.38 +1.7
233,979 - ABIE40_RS01175 0.38 +0.4
233,979 - ABIE40_RS01175 0.38 -1.8
233,979 - ABIE40_RS01175 0.38 -0.1
233,979 - ABIE40_RS01175 0.38 -2.7
233,979 - ABIE40_RS01175 0.38 -0.0
234,062 + ABIE40_RS01175 0.47 +0.8
234,062 + ABIE40_RS01175 0.47 -0.9
234,063 - ABIE40_RS01175 0.47 -0.8
234,063 - ABIE40_RS01175 0.47 +0.7
234,063 - ABIE40_RS01175 0.47 +0.2
234,230 + ABIE40_RS01175 0.64 -2.2
234,230 + ABIE40_RS01175 0.64 -0.5
234,230 + ABIE40_RS01175 0.64 +0.4
234,230 + ABIE40_RS01175 0.64 +0.5
234,230 + ABIE40_RS01175 0.64 -0.9
234,231 - ABIE40_RS01175 0.64 -2.7
234,231 - ABIE40_RS01175 0.64 +0.4
234,275 + ABIE40_RS01175 0.68 +0.5
234,275 + ABIE40_RS01175 0.68 -2.5
234,275 + ABIE40_RS01175 0.68 -0.2
234,276 - ABIE40_RS01175 0.68 -1.8
234,276 - ABIE40_RS01175 0.68 +1.3

Or see this region's nucleotide sequence