Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00920 and ABIE40_RS00925 are separated by 3 nucleotides ABIE40_RS00925 and ABIE40_RS00930 overlap by 1 nucleotides ABIE40_RS00930 and ABIE40_RS00935 are separated by 268 nucleotides
ABIE40_RS00920: ABIE40_RS00920 - NlpC/P60 family protein, at 188,937 to 189,791
_RS00920
ABIE40_RS00925: ABIE40_RS00925 - ABC transporter permease, at 189,795 to 190,646
_RS00925
ABIE40_RS00930: ABIE40_RS00930 - ABC transporter permease, at 190,646 to 191,596
_RS00930
ABIE40_RS00935: ABIE40_RS00935 - ABC transporter substrate-binding protein, at 191,865 to 193,379
_RS00935
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 189.674 kb on + strand, within ABIE40_RS00920 at 189.674 kb on + strand, within ABIE40_RS00920 at 189.744 kb on - strand at 189.756 kb on + strand at 189.756 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.790 kb on - strand at 189.790 kb on - strand at 189.790 kb on - strand at 189.790 kb on - strand at 189.790 kb on - strand at 189.790 kb on - strand at 189.796 kb on + strand at 189.797 kb on - strand at 190.052 kb on + strand, within ABIE40_RS00925 at 190.053 kb on - strand, within ABIE40_RS00925 at 190.120 kb on + strand, within ABIE40_RS00925 at 190.120 kb on + strand, within ABIE40_RS00925 at 190.120 kb on + strand, within ABIE40_RS00925 at 190.120 kb on + strand, within ABIE40_RS00925 at 190.121 kb on - strand, within ABIE40_RS00925 at 190.141 kb on - strand, within ABIE40_RS00925 at 190.272 kb on + strand, within ABIE40_RS00925 at 190.273 kb on - strand, within ABIE40_RS00925 at 190.544 kb on + strand, within ABIE40_RS00925 at 190.544 kb on + strand, within ABIE40_RS00925 at 190.545 kb on - strand, within ABIE40_RS00925 at 190.545 kb on - strand, within ABIE40_RS00925 at 190.545 kb on - strand, within ABIE40_RS00925 at 190.545 kb on - strand, within ABIE40_RS00925 at 190.545 kb on - strand, within ABIE40_RS00925 at 190.552 kb on - strand, within ABIE40_RS00925 at 190.552 kb on - strand, within ABIE40_RS00925 at 190.552 kb on - strand, within ABIE40_RS00925 at 190.587 kb on - strand at 190.686 kb on + strand at 190.686 kb on + strand at 190.687 kb on - strand at 190.687 kb on - strand at 190.687 kb on - strand at 191.349 kb on + strand, within ABIE40_RS00930 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.353 kb on + strand, within ABIE40_RS00930 at 191.353 kb on + strand, within ABIE40_RS00930 at 191.353 kb on + strand, within ABIE40_RS00930 at 191.353 kb on + strand, within ABIE40_RS00930 at 191.353 kb on + strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.355 kb on + strand, within ABIE40_RS00930 at 191.355 kb on + strand, within ABIE40_RS00930 at 191.355 kb on + strand, within ABIE40_RS00930 at 191.356 kb on - strand, within ABIE40_RS00930 at 191.356 kb on - strand, within ABIE40_RS00930 at 191.356 kb on - strand, within ABIE40_RS00930 at 191.598 kb on + strand at 191.598 kb on + strand at 191.598 kb on + strand at 191.599 kb on - strand at 191.599 kb on - strand at 191.599 kb on - strand at 191.815 kb on + strand at 191.815 kb on + strand at 191.815 kb on + strand at 191.815 kb on + strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.820 kb on + strand at 191.820 kb on + strand at 191.821 kb on - strand at 191.821 kb on - strand at 191.844 kb on + strand at 191.845 kb on - strand at 191.845 kb on - strand at 191.922 kb on + strand at 191.923 kb on - strand at 191.975 kb on - strand at 191.975 kb on - strand at 191.975 kb on - strand at 192.020 kb on - strand, within ABIE40_RS00935 at 192.020 kb on - strand, within ABIE40_RS00935 at 192.094 kb on + strand, within ABIE40_RS00935 at 192.103 kb on + strand, within ABIE40_RS00935 at 192.104 kb on - strand, within ABIE40_RS00935 at 192.104 kb on - strand, within ABIE40_RS00935 at 192.104 kb on - strand, within ABIE40_RS00935 at 192.106 kb on + strand, within ABIE40_RS00935 at 192.106 kb on + strand, within ABIE40_RS00935 at 192.107 kb on - strand, within ABIE40_RS00935 at 192.121 kb on + strand, within ABIE40_RS00935 at 192.125 kb on + strand, within ABIE40_RS00935 at 192.126 kb on - strand, within ABIE40_RS00935 at 192.289 kb on + strand, within ABIE40_RS00935 at 192.290 kb on - strand, within ABIE40_RS00935 at 192.376 kb on + strand, within ABIE40_RS00935 at 192.424 kb on + strand, within ABIE40_RS00935 at 192.425 kb on - strand, within ABIE40_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 189,674 + ABIE40_RS00920 0.86 -0.7 189,674 + ABIE40_RS00920 0.86 +0.5 189,744 - -0.7 189,756 + -0.3 189,756 + +0.4 189,789 + +0.4 189,789 + +1.3 189,789 + +1.5 189,789 + +0.4 189,789 + -1.9 189,789 + -0.0 189,789 + +1.0 189,790 - -2.2 189,790 - +0.6 189,790 - +0.6 189,790 - +0.2 189,790 - -2.2 189,790 - -3.1 189,796 + +0.6 189,797 - -2.3 190,052 + ABIE40_RS00925 0.30 -1.5 190,053 - ABIE40_RS00925 0.30 -0.8 190,120 + ABIE40_RS00925 0.38 -2.9 190,120 + ABIE40_RS00925 0.38 -3.0 190,120 + ABIE40_RS00925 0.38 -1.6 190,120 + ABIE40_RS00925 0.38 -2.2 190,121 - ABIE40_RS00925 0.38 +2.2 190,141 - ABIE40_RS00925 0.41 -2.5 190,272 + ABIE40_RS00925 0.56 +0.2 190,273 - ABIE40_RS00925 0.56 -1.4 190,544 + ABIE40_RS00925 0.88 -2.8 190,544 + ABIE40_RS00925 0.88 -0.6 190,545 - ABIE40_RS00925 0.88 -2.1 190,545 - ABIE40_RS00925 0.88 -0.1 190,545 - ABIE40_RS00925 0.88 -2.8 190,545 - ABIE40_RS00925 0.88 -2.4 190,545 - ABIE40_RS00925 0.88 +0.6 190,552 - ABIE40_RS00925 0.89 -1.2 190,552 - ABIE40_RS00925 0.89 -1.5 190,552 - ABIE40_RS00925 0.89 -0.2 190,587 - -2.3 190,686 + -1.6 190,686 + -2.6 190,687 - -3.3 190,687 - -1.2 190,687 - +0.2 191,349 + ABIE40_RS00930 0.74 -1.2 191,349 + ABIE40_RS00930 0.74 -1.0 191,349 + ABIE40_RS00930 0.74 -1.7 191,349 + ABIE40_RS00930 0.74 -1.6 191,349 + ABIE40_RS00930 0.74 -2.2 191,349 + ABIE40_RS00930 0.74 -2.2 191,350 - ABIE40_RS00930 0.74 -3.7 191,350 - ABIE40_RS00930 0.74 -1.4 191,350 - ABIE40_RS00930 0.74 -1.7 191,350 - ABIE40_RS00930 0.74 -0.6 191,350 - ABIE40_RS00930 0.74 -1.2 191,350 - ABIE40_RS00930 0.74 -0.8 191,350 - ABIE40_RS00930 0.74 -0.6 191,350 - ABIE40_RS00930 0.74 +0.6 191,350 - ABIE40_RS00930 0.74 +2.2 191,353 + ABIE40_RS00930 0.74 +0.6 191,353 + ABIE40_RS00930 0.74 +1.8 191,353 + ABIE40_RS00930 0.74 +1.2 191,353 + ABIE40_RS00930 0.74 -1.7 191,353 + ABIE40_RS00930 0.74 -3.0 191,354 - ABIE40_RS00930 0.74 -1.8 191,354 - ABIE40_RS00930 0.74 -2.0 191,354 - ABIE40_RS00930 0.74 -1.8 191,354 - ABIE40_RS00930 0.74 -2.5 191,354 - ABIE40_RS00930 0.74 -2.2 191,354 - ABIE40_RS00930 0.74 -2.0 191,354 - ABIE40_RS00930 0.74 -0.8 191,354 - ABIE40_RS00930 0.74 -1.8 191,355 + ABIE40_RS00930 0.75 -0.6 191,355 + ABIE40_RS00930 0.75 +0.2 191,355 + ABIE40_RS00930 0.75 -1.0 191,356 - ABIE40_RS00930 0.75 -2.4 191,356 - ABIE40_RS00930 0.75 -3.1 191,356 - ABIE40_RS00930 0.75 -1.7 191,598 + -2.8 191,598 + -1.2 191,598 + -3.2 191,599 - -2.0 191,599 - -2.5 191,599 - -0.2 191,815 + -1.2 191,815 + -2.3 191,815 + -3.1 191,815 + -1.3 191,816 - -1.4 191,816 - -1.8 191,816 - -0.9 191,816 - +0.3 191,816 - -1.0 191,816 - -0.2 191,816 - +2.6 191,816 - -3.0 191,816 - +0.6 191,816 - -0.6 191,816 - +2.0 191,820 + -2.2 191,820 + -2.2 191,821 - +1.2 191,821 - +0.2 191,844 + -2.5 191,845 - +0.8 191,845 - -1.1 191,922 + -0.6 191,923 - +0.2 191,975 - -3.5 191,975 - +1.2 191,975 - -2.9 192,020 - ABIE40_RS00935 0.10 -0.9 192,020 - ABIE40_RS00935 0.10 -0.9 192,094 + ABIE40_RS00935 0.15 -1.7 192,103 + ABIE40_RS00935 0.16 -0.4 192,104 - ABIE40_RS00935 0.16 -0.4 192,104 - ABIE40_RS00935 0.16 -0.4 192,104 - ABIE40_RS00935 0.16 -0.1 192,106 + ABIE40_RS00935 0.16 -1.5 192,106 + ABIE40_RS00935 0.16 -1.9 192,107 - ABIE40_RS00935 0.16 -0.6 192,121 + ABIE40_RS00935 0.17 -1.7 192,125 + ABIE40_RS00935 0.17 -0.8 192,126 - ABIE40_RS00935 0.17 -2.5 192,289 + ABIE40_RS00935 0.28 -2.4 192,290 - ABIE40_RS00935 0.28 -2.9 192,376 + ABIE40_RS00935 0.34 -0.4 192,424 + ABIE40_RS00935 0.37 -2.4 192,425 - ABIE40_RS00935 0.37 -0.6
Or see this region's nucleotide sequence