Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24950 and ABID97_RS24955 overlap by 4 nucleotides ABID97_RS24955 and ABID97_RS24960 are separated by 38 nucleotides ABID97_RS24960 and ABID97_RS24965 are separated by 156 nucleotides
ABID97_RS24950: ABID97_RS24950 - FecR domain-containing protein, at 5,166,024 to 5,166,515
_RS24950
ABID97_RS24955: ABID97_RS24955 - OmpA family protein, at 5,166,512 to 5,167,126
_RS24955
ABID97_RS24960: ABID97_RS24960 - tyrosine--tRNA ligase, at 5,167,165 to 5,168,397
_RS24960
ABID97_RS24965: ABID97_RS24965 - peptidoglycan DD-metalloendopeptidase family protein, at 5,168,554 to 5,169,897
_RS24965
Position (kb) 5167
5168
5169 Strain fitness (log2 ratio) -1
0
1 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.816 kb on - strand, within ABID97_RS24955 at 5166.816 kb on - strand, within ABID97_RS24955 at 5166.816 kb on - strand, within ABID97_RS24955 at 5168.431 kb on + strand at 5168.431 kb on + strand at 5168.431 kb on + strand at 5168.432 kb on - strand at 5168.434 kb on - strand at 5168.434 kb on - strand at 5168.463 kb on + strand at 5168.605 kb on + strand at 5168.605 kb on + strand at 5168.606 kb on - strand at 5168.607 kb on + strand at 5168.607 kb on + strand at 5168.607 kb on + strand at 5168.608 kb on - strand at 5168.608 kb on - strand at 5168.608 kb on - strand at 5168.608 kb on - strand at 5168.608 kb on - strand at 5168.620 kb on + strand at 5168.620 kb on + strand at 5168.620 kb on + strand at 5168.620 kb on + strand at 5168.621 kb on - strand at 5168.621 kb on - strand at 5169.242 kb on - strand, within ABID97_RS24965 at 5169.367 kb on + strand, within ABID97_RS24965 at 5169.367 kb on + strand, within ABID97_RS24965 at 5169.367 kb on + strand, within ABID97_RS24965 at 5169.367 kb on + strand, within ABID97_RS24965 at 5169.368 kb on - strand, within ABID97_RS24965 at 5169.370 kb on + strand, within ABID97_RS24965
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 5,166,815 + ABID97_RS24955 0.49 -0.3 5,166,815 + ABID97_RS24955 0.49 -0.2 5,166,815 + ABID97_RS24955 0.49 +0.6 5,166,815 + ABID97_RS24955 0.49 +0.1 5,166,815 + ABID97_RS24955 0.49 -0.1 5,166,815 + ABID97_RS24955 0.49 +0.4 5,166,815 + ABID97_RS24955 0.49 +0.5 5,166,816 - ABID97_RS24955 0.49 -0.9 5,166,816 - ABID97_RS24955 0.49 +0.1 5,166,816 - ABID97_RS24955 0.49 -0.1 5,168,431 + -0.7 5,168,431 + -0.6 5,168,431 + +0.7 5,168,432 - -0.1 5,168,434 - +0.3 5,168,434 - -0.1 5,168,463 + -0.3 5,168,605 + +0.1 5,168,605 + +0.5 5,168,606 - +0.0 5,168,607 + +0.6 5,168,607 + +0.8 5,168,607 + +0.4 5,168,608 - -0.7 5,168,608 - +0.8 5,168,608 - +0.5 5,168,608 - -0.4 5,168,608 - +0.3 5,168,620 + -0.5 5,168,620 + +0.1 5,168,620 + +0.3 5,168,620 + -1.0 5,168,621 - +1.1 5,168,621 - -0.4 5,169,242 - ABID97_RS24965 0.51 +0.3 5,169,367 + ABID97_RS24965 0.60 +0.7 5,169,367 + ABID97_RS24965 0.60 -0.4 5,169,367 + ABID97_RS24965 0.60 -0.1 5,169,367 + ABID97_RS24965 0.60 +0.1 5,169,368 - ABID97_RS24965 0.61 +1.1 5,169,370 + ABID97_RS24965 0.61 -1.3
Or see this region's nucleotide sequence