Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22395 and ABID97_RS22400 are separated by 8 nucleotides ABID97_RS22400 and ABID97_RS22405 are separated by 127 nucleotides ABID97_RS22405 and ABID97_RS22410 are separated by 12 nucleotides ABID97_RS22410 and ABID97_RS22415 are separated by 107 nucleotides
ABID97_RS22395: ABID97_RS22395 - ABC transporter substrate-binding protein, at 4,640,000 to 4,641,034
_RS22395
ABID97_RS22400: ABID97_RS22400 - nucleoside deaminase, at 4,641,043 to 4,641,564
_RS22400
ABID97_RS22405: ABID97_RS22405 - urease accessory protein UreD, at 4,641,692 to 4,642,522
_RS22405
ABID97_RS22410: ABID97_RS22410 - LysR substrate-binding domain-containing protein, at 4,642,535 to 4,643,407
_RS22410
ABID97_RS22415: ABID97_RS22415 - mercaptosuccinate dioxygenase, at 4,643,515 to 4,644,105
_RS22415
Position (kb) 4641
4642
4643 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4640.855 kb on + strand, within ABID97_RS22395 at 4640.986 kb on + strand at 4641.109 kb on + strand, within ABID97_RS22400 at 4641.225 kb on + strand, within ABID97_RS22400 at 4641.325 kb on + strand, within ABID97_RS22400 at 4641.325 kb on + strand, within ABID97_RS22400 at 4641.325 kb on + strand, within ABID97_RS22400 at 4641.395 kb on - strand, within ABID97_RS22400 at 4641.681 kb on - strand at 4642.152 kb on - strand, within ABID97_RS22405 at 4642.521 kb on - strand at 4642.629 kb on + strand, within ABID97_RS22410 at 4642.629 kb on + strand, within ABID97_RS22410 at 4642.629 kb on + strand, within ABID97_RS22410 at 4642.630 kb on - strand, within ABID97_RS22410 at 4642.630 kb on - strand, within ABID97_RS22410 at 4642.630 kb on - strand, within ABID97_RS22410 at 4642.635 kb on + strand, within ABID97_RS22410 at 4642.636 kb on - strand, within ABID97_RS22410 at 4642.636 kb on - strand, within ABID97_RS22410 at 4642.639 kb on - strand, within ABID97_RS22410 at 4642.639 kb on - strand, within ABID97_RS22410 at 4642.780 kb on - strand, within ABID97_RS22410 at 4642.893 kb on + strand, within ABID97_RS22410 at 4642.894 kb on - strand, within ABID97_RS22410 at 4642.908 kb on - strand, within ABID97_RS22410 at 4643.199 kb on + strand, within ABID97_RS22410 at 4643.199 kb on + strand, within ABID97_RS22410 at 4643.199 kb on + strand, within ABID97_RS22410 at 4643.408 kb on - strand at 4643.426 kb on + strand at 4643.469 kb on + strand at 4643.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 4,640,855 + ABID97_RS22395 0.83 +0.8 4,640,986 + +1.1 4,641,109 + ABID97_RS22400 0.13 -0.2 4,641,225 + ABID97_RS22400 0.35 -0.4 4,641,325 + ABID97_RS22400 0.54 -2.9 4,641,325 + ABID97_RS22400 0.54 -1.6 4,641,325 + ABID97_RS22400 0.54 -1.8 4,641,395 - ABID97_RS22400 0.67 +0.5 4,641,681 - +0.3 4,642,152 - ABID97_RS22405 0.55 +0.9 4,642,521 - -0.9 4,642,629 + ABID97_RS22410 0.11 -0.1 4,642,629 + ABID97_RS22410 0.11 -0.6 4,642,629 + ABID97_RS22410 0.11 -0.5 4,642,630 - ABID97_RS22410 0.11 +0.1 4,642,630 - ABID97_RS22410 0.11 +1.4 4,642,630 - ABID97_RS22410 0.11 -1.5 4,642,635 + ABID97_RS22410 0.11 +0.0 4,642,636 - ABID97_RS22410 0.12 -0.8 4,642,636 - ABID97_RS22410 0.12 -0.4 4,642,639 - ABID97_RS22410 0.12 +0.1 4,642,639 - ABID97_RS22410 0.12 -0.2 4,642,780 - ABID97_RS22410 0.28 -0.4 4,642,893 + ABID97_RS22410 0.41 -0.2 4,642,894 - ABID97_RS22410 0.41 +0.0 4,642,908 - ABID97_RS22410 0.43 +0.1 4,643,199 + ABID97_RS22410 0.76 -0.0 4,643,199 + ABID97_RS22410 0.76 -0.9 4,643,199 + ABID97_RS22410 0.76 -0.5 4,643,408 - -0.5 4,643,426 + +0.1 4,643,469 + +0.8 4,643,470 - +0.4
Or see this region's nucleotide sequence