Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16725 and ABID97_RS16730 overlap by 4 nucleotides ABID97_RS16730 and ABID97_RS16735 overlap by 1 nucleotides ABID97_RS16735 and ABID97_RS16740 are separated by 34 nucleotides ABID97_RS16740 and ABID97_RS16745 are separated by 106 nucleotides
ABID97_RS16725: ABID97_RS16725 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 3,460,817 to 3,461,446
_RS16725
ABID97_RS16730: ABID97_RS16730 - oxygen-dependent coproporphyrinogen oxidase, at 3,461,443 to 3,462,360
_RS16730
ABID97_RS16735: ABID97_RS16735 - phosphoribosylamine--glycine ligase, at 3,462,360 to 3,463,658
_RS16735
ABID97_RS16740: ABID97_RS16740 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,463,693 to 3,464,418
_RS16740
ABID97_RS16745: ABID97_RS16745 - class I SAM-dependent methyltransferase, at 3,464,525 to 3,465,313
_RS16745
Position (kb)
3462
3463
3464 Strain fitness (log2 ratio)
-2
-1
0
1 at 3463.685 kb on - strand at 3463.685 kb on - strand at 3463.685 kb on - strand at 3463.718 kb on + strand at 3464.174 kb on + strand, within ABID97_RS16740 at 3464.175 kb on - strand, within ABID97_RS16740 at 3464.211 kb on + strand, within ABID97_RS16740 at 3464.212 kb on - strand, within ABID97_RS16740 at 3464.407 kb on - strand at 3464.515 kb on + strand at 3464.516 kb on - strand at 3464.594 kb on + strand at 3464.594 kb on + strand at 3464.595 kb on - strand at 3464.595 kb on - strand at 3464.597 kb on + strand at 3464.598 kb on - strand at 3464.598 kb on - strand at 3464.598 kb on - strand at 3464.598 kb on - strand at 3464.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 3,463,685 - -0.5 3,463,685 - +0.7 3,463,685 - -0.3 3,463,718 + -0.2 3,464,174 + ABID97_RS16740 0.66 -0.3 3,464,175 - ABID97_RS16740 0.66 -1.3 3,464,211 + ABID97_RS16740 0.71 -2.4 3,464,212 - ABID97_RS16740 0.71 -0.6 3,464,407 - -1.1 3,464,515 + -1.1 3,464,516 - -0.8 3,464,594 + -0.3 3,464,594 + +0.6 3,464,595 - -0.2 3,464,595 - -0.1 3,464,597 + -0.3 3,464,598 - -0.9 3,464,598 - -0.7 3,464,598 - -1.1 3,464,598 - -0.9 3,464,598 - -0.6
Or see this region's nucleotide sequence