Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16735

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16725 and ABID97_RS16730 overlap by 4 nucleotidesABID97_RS16730 and ABID97_RS16735 overlap by 1 nucleotidesABID97_RS16735 and ABID97_RS16740 are separated by 34 nucleotidesABID97_RS16740 and ABID97_RS16745 are separated by 106 nucleotides ABID97_RS16725: ABID97_RS16725 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 3,460,817 to 3,461,446 _RS16725 ABID97_RS16730: ABID97_RS16730 - oxygen-dependent coproporphyrinogen oxidase, at 3,461,443 to 3,462,360 _RS16730 ABID97_RS16735: ABID97_RS16735 - phosphoribosylamine--glycine ligase, at 3,462,360 to 3,463,658 _RS16735 ABID97_RS16740: ABID97_RS16740 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,463,693 to 3,464,418 _RS16740 ABID97_RS16745: ABID97_RS16745 - class I SAM-dependent methyltransferase, at 3,464,525 to 3,465,313 _RS16745 Position (kb) 3462 3463 3464Strain fitness (log2 ratio) -2 -1 0 1at 3463.685 kb on - strandat 3463.685 kb on - strandat 3463.685 kb on - strandat 3463.718 kb on + strandat 3464.174 kb on + strand, within ABID97_RS16740at 3464.175 kb on - strand, within ABID97_RS16740at 3464.211 kb on + strand, within ABID97_RS16740at 3464.212 kb on - strand, within ABID97_RS16740at 3464.407 kb on - strandat 3464.515 kb on + strandat 3464.516 kb on - strandat 3464.594 kb on + strandat 3464.594 kb on + strandat 3464.595 kb on - strandat 3464.595 kb on - strandat 3464.597 kb on + strandat 3464.598 kb on - strandat 3464.598 kb on - strandat 3464.598 kb on - strandat 3464.598 kb on - strandat 3464.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,463,685 - -0.5
3,463,685 - +0.7
3,463,685 - -0.3
3,463,718 + -0.2
3,464,174 + ABID97_RS16740 0.66 -0.3
3,464,175 - ABID97_RS16740 0.66 -1.3
3,464,211 + ABID97_RS16740 0.71 -2.4
3,464,212 - ABID97_RS16740 0.71 -0.6
3,464,407 - -1.1
3,464,515 + -1.1
3,464,516 - -0.8
3,464,594 + -0.3
3,464,594 + +0.6
3,464,595 - -0.2
3,464,595 - -0.1
3,464,597 + -0.3
3,464,598 - -0.9
3,464,598 - -0.7
3,464,598 - -1.1
3,464,598 - -0.9
3,464,598 - -0.6

Or see this region's nucleotide sequence