Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11215

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11210 and ABID97_RS11215 are separated by 112 nucleotidesABID97_RS11215 and ABID97_RS11220 are separated by 46 nucleotidesABID97_RS11220 and ABID97_RS11225 are separated by 96 nucleotides ABID97_RS11210: ABID97_RS11210 - branched-chain amino acid ABC transporter permease, at 2,317,781 to 2,318,668 _RS11210 ABID97_RS11215: ABID97_RS11215 - ABC transporter substrate-binding protein, at 2,318,781 to 2,320,043 _RS11215 ABID97_RS11220: ABID97_RS11220 - shikimate dehydrogenase, at 2,320,090 to 2,320,923 _RS11220 ABID97_RS11225: ABID97_RS11225 - glycerol dehydrogenase, at 2,321,020 to 2,322,153 _RS11225 Position (kb) 2318 2319 2320 2321Strain fitness (log2 ratio) -2 -1 0 1 2at 2318.337 kb on + strand, within ABID97_RS11210at 2318.338 kb on - strand, within ABID97_RS11210at 2318.434 kb on - strand, within ABID97_RS11210at 2318.478 kb on + strand, within ABID97_RS11210at 2318.478 kb on + strand, within ABID97_RS11210at 2318.479 kb on - strand, within ABID97_RS11210at 2318.479 kb on - strand, within ABID97_RS11210at 2318.520 kb on + strand, within ABID97_RS11210at 2318.521 kb on - strand, within ABID97_RS11210at 2318.669 kb on - strandat 2319.041 kb on - strand, within ABID97_RS11215at 2319.211 kb on + strand, within ABID97_RS11215at 2319.265 kb on + strand, within ABID97_RS11215at 2319.266 kb on - strand, within ABID97_RS11215at 2319.266 kb on - strand, within ABID97_RS11215at 2319.317 kb on - strand, within ABID97_RS11215at 2319.569 kb on - strand, within ABID97_RS11215at 2319.569 kb on - strand, within ABID97_RS11215at 2321.005 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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2,318,337 + ABID97_RS11210 0.63 +0.1
2,318,338 - ABID97_RS11210 0.63 +2.0
2,318,434 - ABID97_RS11210 0.74 -0.0
2,318,478 + ABID97_RS11210 0.78 -1.5
2,318,478 + ABID97_RS11210 0.78 +1.3
2,318,479 - ABID97_RS11210 0.79 -2.0
2,318,479 - ABID97_RS11210 0.79 +0.1
2,318,520 + ABID97_RS11210 0.83 -0.7
2,318,521 - ABID97_RS11210 0.83 +0.1
2,318,669 - +0.3
2,319,041 - ABID97_RS11215 0.21 +0.2
2,319,211 + ABID97_RS11215 0.34 -0.0
2,319,265 + ABID97_RS11215 0.38 -0.1
2,319,266 - ABID97_RS11215 0.38 -0.8
2,319,266 - ABID97_RS11215 0.38 -0.2
2,319,317 - ABID97_RS11215 0.42 +0.5
2,319,569 - ABID97_RS11215 0.62 +0.2
2,319,569 - ABID97_RS11215 0.62 +0.4
2,321,005 + -0.1

Or see this region's nucleotide sequence